genome.fa.s10.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  127  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43575018--43575069	21	2.5	22	84	9	65	71	15	5	7	1.29
43575554--43575604	24	2.1	24	85	10	68	27	9	1	60	1.39
43575694--43575726	11	2.9	11	95	4	57	45	0	33	21	1.52
43587767--43587810	11	4.2	11	88	8	56	40	2	0	56	1.11
43587659--43587800	64	2.2	64	80	8	146	40	2	5	50	1.40
43589862--43589890	3	9.7	3	100	0	58	0	68	31	0	0.89
43599073--43599099	2	13.5	2	100	0	54	48	0	0	51	1.00
43609441--43609505	28	2.3	29	87	12	91	50	4	0	44	1.22
43619086--43619146	23	2.7	23	94	0	113	31	26	21	21	1.98
43622104--43622191	30	3.0	28	75	14	88	38	1	4	55	1.28
43622573--43622616	20	2.1	21	87	4	63	34	0	0	65	0.93
43622584--43622617	10	3.4	10	87	0	50	32	0	0	67	0.91
43626947--43627101	61	2.6	60	85	4	204	24	16	9	50	1.73
43627748--43627783	18	1.9	18	88	5	54	41	5	2	50	1.40
43635930--43636106	44	4.0	44	100	0	354	38	13	11	36	1.81
43641995--43642022	2	14.0	2	100	0	56	50	0	0	50	1.00
43651017--43651046	3	10.0	3	92	0	51	36	0	33	30	1.58
43653373--43653436	19	3.4	19	78	4	85	35	10	1	51	1.47
43653455--43653548	37	2.5	37	94	0	161	47	0	15	36	1.46
43653455--43653548	19	5.1	19	76	5	102	47	0	15	36	1.46
43656640--43656678	3	13.0	3	100	0	78	66	0	0	33	0.92
43667204--43667504	150	2.0	149	98	0	575	55	5	9	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43674448--43674497	17	2.7	18	78	12	57	46	2	0	52	1.12
43675931--43675990	19	3.1	18	81	11	66	40	1	1	56	1.19
43681788--43681827	21	2.0	20	85	5	53	40	2	5	52	1.37
43688244--43688282	3	13.0	3	100	0	78	33	0	0	66	0.92
43689520--43689545	6	4.3	6	100	0	52	69	0	0	30	0.89
43696008--43696058	17	3.1	17	72	13	52	47	17	1	33	1.59
43712944--43712987	20	2.1	21	83	4	54	61	2	0	36	1.09
43723263--43723333	21	3.4	21	88	0	106	4	46	18	30	1.68
43725560--43725603	18	2.4	19	84	3	54	56	13	15	13	1.67
43726799--43727224	198	2.2	198	93	1	730	34	20	16	28	1.94
43727583--43727673	47	2.0	46	84	2	119	46	3	7	42	1.49
43727661--43727710	18	2.6	19	76	17	59	14	4	2	80	0.95
43727998--43728059	7	8.9	7	80	7	72	30	50	1	17	1.56
43727844--43728028	95	1.9	95	81	4	221	40	29	2	28	1.68
43728171--43728205	7	5.0	7	85	0	52	34	51	0	14	1.42
43728179--43728209	14	2.2	14	94	0	53	41	41	0	16	1.48
43728160--43728211	21	2.6	19	88	8	77	40	44	0	15	1.46
43728239--43728272	15	2.3	15	90	5	52	35	29	0	35	1.58
43728319--43728360	19	2.2	20	86	4	59	42	23	0	33	1.55
43728508--43729003	114	4.4	112	77	6	480	30	24	22	22	1.99
43728502--43729003	228	2.2	228	82	2	600	30	24	22	22	1.99
43733244--43733378	63	2.1	64	83	2	164	49	11	3	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43740975--43741002	3	9.3	3	100	0	56	0	32	0	67	0.91
43759360--43759451	47	1.9	47	84	6	123	44	11	14	29	1.80
43762996--43763036	21	2.0	21	95	0	73	60	0	17	21	1.35
43769076--43769112	5	7.8	5	96	3	60	64	13	0	21	1.27
43769504--43769532	13	2.2	13	100	0	58	44	0	0	55	0.99
43774992--43775031	21	2.0	20	95	5	71	47	15	17	20	1.83
43786453--43786512	28	2.1	29	84	6	77	63	6	0	30	1.20
43786485--43786518	17	2.1	16	88	5	50	52	5	0	41	1.25
43788168--43788257	33	2.7	33	85	0	126	28	25	14	31	1.95
43797840--43797882	17	2.5	17	92	0	68	23	20	0	55	1.43
43799365--43799479	57	2.0	57	89	0	176	28	3	5	62	1.33
43799374--43799502	57	2.3	57	82	5	145	34	3	3	58	1.32
43803191--43803292	44	2.3	44	87	0	150	32	18	30	18	1.95
43813621--43813652	6	5.3	6	100	0	64	31	50	0	18	1.48
43815878--43815902	2	12.5	2	100	0	50	0	52	0	48	1.00
43826510--43826536	5	5.4	5	100	0	54	18	0	59	22	1.38
43829673--43829723	23	2.3	21	74	12	50	29	5	7	56	1.51
43840487--43840515	14	2.0	15	93	6	51	72	0	0	27	0.85
43851270--43851425	78	2.0	78	100	0	312	23	16	16	43	1.87
43857576--43857607	15	2.3	15	89	10	50	71	0	0	28	0.86
43859357--43859419	29	2.1	31	88	5	94	46	9	14	30	1.76
43860517--43860713	105	1.9	105	81	6	238	34	16	24	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43863548--43863599	24	2.2	23	82	6	59	7	21	1	69	1.24
43865333--43865367	15	2.4	15	90	4	54	31	0	0	68	0.90
43865393--43865428	18	1.9	19	88	5	56	44	0	0	55	0.99
43865769--43865821	24	2.2	24	78	21	58	64	1	0	33	1.05
43866941--43866974	16	2.1	16	100	0	68	44	5	11	38	1.65
43879326--43879396	27	2.6	27	77	4	72	26	35	28	9	1.88
43879588--43879947	158	2.3	157	95	1	634	52	7	9	30	1.61
43880177--43880214	20	1.9	20	88	0	58	42	5	0	52	1.24
43884443--43884496	24	2.2	24	90	6	83	40	22	22	14	1.90
43889365--43889398	14	2.5	13	90	4	50	44	0	0	55	0.99
43898142--43898215	37	2.0	37	94	0	130	40	21	10	27	1.86
43901744--43901878	2	67.5	2	100	0	270	49	0	0	50	1.00
43911042--43911074	6	5.5	6	96	0	57	57	0	0	42	0.98
43912760--43912786	2	13.5	2	100	0	54	51	0	0	48	1.00
43920820--43920858	19	2.1	19	100	0	78	33	25	10	30	1.89
43926227--43926255	3	9.7	3	100	0	58	31	0	0	68	0.89
43932874--43932950	29	2.6	29	83	4	91	45	15	12	25	1.82
43934993--43935041	24	2.0	24	100	0	98	24	22	8	44	1.79
43938105--43938146	15	2.8	16	78	10	52	73	9	7	9	1.24
43944394--43944504	57	1.9	57	80	10	129	63	1	4	29	1.24
43944998--43945034	17	2.2	17	90	0	56	29	0	18	51	1.47
43946258--43946353	46	2.1	46	96	0	174	34	8	28	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43948237--43948299	9	6.9	9	79	15	67	34	0	3	61	1.12
43948237--43948299	19	3.4	19	82	10	78	34	0	3	61	1.12
43949298--43949335	18	2.3	17	86	13	53	44	2	0	52	1.14
43951749--43951778	11	2.7	11	94	0	51	26	6	0	66	1.16
43952500--43952593	47	2.0	47	100	0	188	27	10	17	44	1.81
43952864--43952896	16	2.1	16	100	0	66	36	6	12	45	1.66
43956200--43956233	12	2.6	13	86	13	52	50	0	0	50	1.00
43956473--43956762	23	12.7	23	84	6	385	49	22	0	27	1.53
43956473--43956762	67	4.2	68	87	6	374	49	22	0	27	1.53
43956473--43956770	114	2.6	111	89	4	436	48	22	0	27	1.53
43956883--43957244	44	8.0	45	88	6	554	26	0	25	48	1.52
43956883--43957242	135	2.6	135	93	2	614	26	0	24	48	1.51
43956883--43957244	91	4.0	89	93	2	550	26	0	25	48	1.52
43957355--43957877	23	23.0	23	83	6	663	28	0	21	49	1.52
43957374--43957869	249	2.0	248	90	2	780	28	0	22	48	1.52
43957365--43957877	272	1.9	271	88	4	782	28	0	22	49	1.52
43957875--43958679	23	35.1	23	78	8	741	47	22	0	26	1.55
43957875--43958679	46	17.0	46	83	7	899	47	22	0	26	1.55
43958052--43958138	30	3.1	30	78	20	116	47	25	0	27	1.53
43957875--43958674	90	8.5	90	79	10	658	47	22	0	26	1.55
43957875--43958679	113	6.8	115	84	7	876	47	22	0	26	1.55
43960512--43960763	123	2.0	125	89	2	391	30	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43961144--43961197	22	2.5	22	87	0	90	46	9	18	25	1.79
43961440--43961473	17	2.0	17	100	0	68	35	11	5	47	1.65
43963563--43963607	23	2.0	23	82	8	56	44	6	2	46	1.42
43968142--43968184	21	2.0	21	82	8	52	32	0	6	60	1.23
43968615--43968657	20	2.2	20	100	0	86	37	4	9	48	1.56
43995214--43995248	8	4.2	8	96	3	61	22	11	28	37	1.89
43998549--43998619	34	2.1	33	92	2	115	47	5	7	39	1.54
43998912--43998975	31	2.1	30	88	5	94	51	7	0	40	1.31
44000404--44000443	17	2.4	17	83	8	55	20	2	0	77	0.88
44000401--44000443	18	2.4	18	77	14	54	20	2	0	76	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136