genome.fa.s10.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  47  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15476769--15477535	384	2.0	384	99	0	1525	43	10	9	35	1.72
15480522--15480604	25	3.3	25	96	0	148	43	14	0	42	1.45
15480498--15480659	45	3.5	44	76	14	164	46	13	1	38	1.51
15481078--15481117	18	2.2	18	86	0	53	40	7	27	25	1.82
15482800--15482841	11	3.7	12	81	6	52	59	0	0	40	0.97
15485245--15485284	7	5.7	7	93	0	71	30	0	12	57	1.36
15491332--15491717	126	3.1	126	93	0	628	27	20	17	35	1.94
15491679--15491816	70	2.0	70	98	0	267	35	19	13	31	1.91
15491774--15491831	28	2.1	28	100	0	116	34	22	20	22	1.97
15492127--15492163	7	5.3	7	100	0	74	45	40	0	13	1.43
15492030--15492249	111	2.0	110	83	5	282	41	20	1	35	1.63
15492146--15492313	90	1.9	90	94	0	300	40	17	1	40	1.60
15492502--15492578	40	1.9	41	84	10	106	23	27	27	22	1.99
15503456--15503760	147	2.1	149	82	4	375	49	18	3	28	1.63
15504984--15505060	37	2.1	37	100	0	154	36	27	7	28	1.85
15507914--15507975	32	1.9	32	96	0	115	48	16	8	27	1.74
15513679--15513708	15	2.0	15	93	0	51	13	13	16	56	1.67
15515989--15516250	88	3.0	88	81	5	224	29	15	15	39	1.89
15515988--15516253	45	6.0	45	80	7	202	29	15	15	39	1.89
15516063--15516222	43	3.7	41	76	11	133	30	14	16	38	1.89
15516054--15516253	88	2.3	87	83	4	231	28	17	16	38	1.91
15524638--15524689	4	12.5	4	88	8	77	23	0	1	75	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15524635--15524688	17	3.3	16	85	14	83	24	0	1	74	0.92
15527118--15527291	93	1.9	92	84	4	233	28	15	28	28	1.96
15527281--15527318	16	2.4	17	87	12	55	81	0	0	18	0.69
15532076--15532109	17	1.9	17	88	5	50	58	5	5	29	1.45
15534407--15534440	17	1.9	17	88	5	50	61	11	2	23	1.43
15536398--15536537	43	3.3	43	86	0	208	22	27	20	30	1.98
15536506--15536633	44	2.9	44	80	2	132	21	24	17	35	1.95
15536930--15536979	21	2.4	21	89	0	73	4	46	16	34	1.65
15539348--15539444	21	4.4	21	72	12	70	37	41	2	19	1.63
15539348--15539432	21	3.8	23	76	11	79	35	42	2	20	1.65
15540379--15540429	8	6.5	8	78	10	52	37	41	0	21	1.54
15540392--15540442	17	3.3	15	82	12	59	35	45	1	17	1.60
15540383--15540428	24	2.0	23	86	4	65	32	45	0	21	1.52
15540958--15541199	41	5.9	38	81	9	232	31	26	21	21	1.98
15540958--15541199	82	3.0	81	82	4	265	31	26	21	21	1.98
15540958--15541186	123	1.9	123	86	5	329	31	25	21	21	1.98
15541292--15541369	40	2.0	40	86	0	111	23	20	21	34	1.97
15574723--15574775	13	4.1	13	78	7	54	45	5	1	47	1.37
15580684--15580737	14	3.8	15	76	18	53	42	5	0	51	1.25
15594798--15594842	21	2.1	21	95	0	81	44	17	15	22	1.86
15600169--15600271	36	2.8	36	80	4	118	33	23	13	30	1.93
15600252--15600343	30	3.1	30	87	6	107	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15604921--15605001	43	1.9	41	85	7	108	48	2	20	28	1.63
15607395--15607510	58	2.0	58	100	0	232	44	13	31	10	1.78
15611620--15611701	43	1.9	41	85	7	110	47	2	20	29	1.63
15613499--15613562	28	2.3	27	81	5	65	51	14	7	26	1.69
15617734--15617768	18	1.9	18	94	0	61	34	8	17	40	1.80
15617884--15617924	21	2.0	21	85	9	57	21	36	0	41	1.54
15618060--15618119	30	2.0	31	83	9	79	20	38	0	41	1.52
15623467--15623520	26	2.1	26	100	0	108	37	7	18	37	1.79
15629351--15629433	30	2.9	28	83	5	94	30	20	21	27	1.98
15629545--15629611	26	2.6	26	82	0	80	37	22	23	16	1.94
15629650--15629835	92	2.0	92	98	0	363	39	19	11	29	1.86
15629881--15630041	27	6.0	27	82	2	189	15	19	22	42	1.88
15629870--15630049	54	3.3	54	81	1	209	17	17	22	42	1.89
15630696--15630782	40	2.4	37	78	14	99	50	10	29	9	1.67
15632810--15632848	18	2.1	19	85	4	53	74	10	0	15	1.07
15642800--15642846	21	2.2	21	77	7	51	8	14	2	74	1.15
15643192--15643217	11	2.4	11	100	0	52	76	0	0	23	0.78
15643341--15643397	24	2.3	25	87	3	80	35	5	1	57	1.31
15644191--15644271	40	2.0	40	100	0	162	34	14	14	35	1.88
15646481--15646537	24	2.4	24	90	0	87	47	7	5	40	1.53
15646493--15646544	24	2.2	24	92	0	86	51	3	3	40	1.38
15657529--15657580	24	2.2	24	86	13	72	38	9	21	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15657272--15657613	140	2.4	141	83	5	363	37	10	20	30	1.87
15657609--15657918	141	2.2	141	84	2	390	33	11	22	31	1.90
15661924--15661971	24	2.1	23	85	11	64	8	8	6	77	1.14
15678154--15678202	25	2.0	25	91	0	80	32	16	14	36	1.89
15688999--15689350	67	5.4	64	67	15	193	34	13	12	38	1.83
15688915--15689582	131	5.1	131	81	2	644	33	13	13	39	1.84
15688916--15689582	260	2.6	261	83	3	797	33	13	13	39	1.84
15691136--15691211	28	2.8	28	91	2	118	32	14	25	27	1.94
15696007--15696031	10	2.5	10	100	0	50	20	0	8	72	1.10
15696034--15696083	26	1.9	26	84	8	66	44	0	2	54	1.11
15704843--15705109	133	2.0	133	96	0	489	50	15	7	27	1.70
15705872--15705934	23	2.9	21	73	13	54	68	4	7	19	1.33
15714401--15714434	17	2.0	17	88	0	50	5	14	29	50	1.67
15714522--15714591	32	2.2	32	82	7	81	35	12	8	42	1.74
15717289--15717314	13	2.0	13	100	0	52	15	15	0	69	1.20
15718642--15718668	12	2.2	12	100	0	54	14	0	7	77	0.97
15718682--15719261	240	2.4	241	85	4	740	31	12	12	43	1.80
15720869--15721074	42	4.9	42	78	2	171	27	24	19	28	1.98
15734279--15734354	26	2.9	26	82	3	91	35	15	7	40	1.77
15736051--15736082	10	3.2	10	95	0	55	50	43	0	6	1.27
15738868--15738915	23	2.1	23	100	0	96	39	4	12	43	1.62
15739678--15739756	39	2.0	39	95	0	140	31	7	15	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15742735--15742765	9	3.4	9	90	0	53	25	12	22	38	1.90
15753397--15753430	18	1.9	18	88	5	52	55	2	2	38	1.30
15753644--15753700	9	6.2	9	74	9	53	40	3	1	54	1.28
15753649--15753695	20	2.4	20	79	10	53	36	4	2	57	1.30
15755146--15755189	20	2.2	20	83	0	52	68	0	0	31	0.90
15759450--15759610	17	9.4	17	65	6	74	20	18	28	32	1.96
15759430--15759506	34	2.3	34	84	4	93	20	20	27	31	1.98
15759492--15759556	34	1.9	34	83	0	85	21	16	29	32	1.96
15769121--15769196	29	2.7	29	74	13	77	59	2	1	36	1.20
15769143--15769286	9	14.4	10	67	21	72	57	3	2	36	1.27
15769167--15769204	11	3.2	12	81	11	51	60	2	0	36	1.11
15769144--15769208	10	6.2	10	81	15	60	63	3	0	33	1.10
15769804--15769841	19	2.0	19	90	10	60	26	0	10	63	1.27
15769935--15769995	31	2.0	31	86	0	86	24	3	21	50	1.63
15770132--15770180	20	2.3	21	80	16	57	46	2	4	46	1.33
15770252--15770300	25	1.9	26	83	4	64	48	2	2	46	1.25
15774225--15774254	15	1.9	16	93	6	53	20	0	0	80	0.72
15777961--15778099	73	1.9	72	88	1	206	49	15	5	28	1.68
15778182--15778223	7	5.9	7	86	5	57	16	0	38	45	1.48
15778313--15778354	7	5.9	7	86	5	57	16	0	38	45	1.48
15778093--15778446	131	2.7	131	98	0	681	35	8	16	39	1.80
15779411--15779450	19	2.1	19	85	0	53	30	2	7	60	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15790452--15790497	24	1.9	24	86	0	65	43	6	10	39	1.66
15794843--15795360	259	2.0	258	92	1	867	37	11	20	30	1.89
15801557--15801601	12	4.1	12	75	21	53	13	26	0	60	1.34
15805850--15806214	183	2.0	182	87	3	527	31	12	18	38	1.87
15812714--15812751	20	2.0	20	89	5	60	13	7	23	55	1.64
15814900--15814953	9	5.9	9	77	18	58	66	1	0	31	1.02
15814940--15814988	22	2.3	22	89	6	75	57	4	0	38	1.18
15814950--15814997	22	2.2	22	92	0	78	56	8	0	35	1.30
15816232--15816265	17	1.9	18	94	5	61	50	5	5	38	1.51
15818049--15818111	26	2.4	27	97	2	119	42	28	14	14	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136