genome.fa.s10.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  6  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531675--1531715	21	2.0	21	85	0	55	46	21	14	17	1.84
1532050--1532111	19	3.2	18	77	11	61	59	6	0	33	1.23
1532049--1532112	20	3.3	19	82	8	67	59	6	0	34	1.23
1532122--1532162	19	2.2	18	91	4	64	68	2	2	26	1.15
1532396--1532438	21	2.0	21	82	8	52	32	25	4	37	1.77
1533565--1533705	76	1.9	76	100	0	282	39	4	6	48	1.50
1541505--1541529	2	12.5	2	100	0	50	52	0	48	0	1.00
1542573--1542612	22	1.9	21	90	10	64	45	0	5	50	1.23
1542704--1542790	39	2.2	40	76	15	101	41	2	3	52	1.31
1544053--1544121	30	2.3	30	97	0	129	33	27	1	37	1.66
1547677--1548203	127	4.2	127	87	1	736	29	17	15	36	1.91
1547679--1548200	252	2.1	253	88	1	778	29	18	15	36	1.91
1548257--1548384	34	3.8	33	81	7	152	43	16	0	39	1.48
1549084--1549122	16	2.4	17	91	4	62	74	0	2	23	0.94
1550558--1550685	34	3.8	33	81	7	152	43	16	0	39	1.48
1551385--1551423	16	2.4	17	91	4	62	74	0	2	23	0.94
1561033--1561203	66	2.6	65	87	4	227	40	19	27	12	1.88
1561174--1561218	21	2.1	21	87	0	63	40	17	37	4	1.70
1561182--1561225	21	2.1	21	82	0	52	36	20	38	4	1.73
1561215--1561286	21	3.4	21	78	0	81	33	13	43	9	1.77
1561688--1561796	43	2.5	42	88	4	155	23	29	21	25	1.99
1562407--1562456	25	1.9	25	84	15	66	8	8	6	78	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1575671--1575710	18	2.2	18	86	0	53	37	0	0	62	0.95
1576205--1576244	18	2.2	19	86	4	55	30	2	2	65	1.19
1583341--1583416	38	2.0	39	94	2	136	39	14	10	35	1.81
1588542--1588857	116	2.7	114	78	5	339	32	17	17	32	1.93
1588542--1588922	116	3.4	113	75	8	321	32	17	18	32	1.94
1592464--1592505	22	1.9	22	90	0	66	61	11	2	23	1.42
1594669--1594751	32	2.6	32	83	7	98	42	16	20	20	1.90
1598746--1598788	19	2.3	19	84	4	52	60	4	6	27	1.43
1598909--1598944	14	2.6	14	83	16	56	72	0	0	27	0.85
1601407--1601561	76	2.0	77	87	1	222	33	25	16	25	1.95
1601589--1601799	107	2.0	107	89	0	323	32	18	19	28	1.96
1602777--1602803	6	4.5	6	100	0	54	29	0	37	33	1.58
1606516--1606560	21	2.0	23	87	8	67	62	6	17	13	1.52
1606804--1606844	21	1.9	22	85	5	57	29	19	31	19	1.96
1608932--1609015	42	2.0	42	95	0	150	35	1	13	50	1.49
1610605--1610629	12	2.1	12	100	0	50	36	16	32	16	1.90
1611937--1611968	15	2.2	15	94	5	57	31	3	0	65	1.08
1612681--1612728	24	2.0	24	100	0	96	45	12	4	37	1.61
1615372--1615487	61	2.0	60	86	11	168	46	5	5	43	1.48
1617030--1617072	22	2.0	22	95	0	77	32	30	11	25	1.91
1617586--1617620	18	1.9	18	88	0	52	40	5	14	40	1.69
1622204--1622247	18	2.5	18	85	10	56	52	0	9	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1622274--1622304	12	2.6	12	94	0	53	70	3	25	0	1.02
1632630--1632694	22	3.0	22	82	6	80	46	18	18	16	1.85
1634878--1634974	24	4.1	23	69	26	62	48	4	0	47	1.21
1634886--1634974	35	2.5	33	81	13	99	48	4	0	47	1.22
1634926--1634975	20	2.5	20	78	15	59	50	2	0	48	1.12
1636775--1636834	12	4.8	12	75	6	57	73	0	11	15	1.10
1636776--1636840	18	3.6	17	74	13	58	75	0	10	13	1.05
1642150--1642251	43	2.4	43	84	0	141	32	7	14	45	1.74
1642973--1643073	49	2.1	49	98	0	193	29	9	10	49	1.70
1643064--1643120	29	2.0	29	82	0	69	31	8	17	42	1.80
1651735--1651791	28	2.0	28	89	0	87	29	15	21	33	1.94
1651805--1652028	50	4.5	50	93	2	369	30	23	13	33	1.93
1651763--1652024	101	2.5	104	90	4	413	30	22	14	32	1.93
1652102--1652134	17	1.9	17	88	11	50	45	21	0	33	1.52
1656448--1656497	23	2.2	23	89	10	77	78	2	0	20	0.86
1658611--1658655	18	2.5	18	82	7	56	40	17	4	37	1.70
1662962--1663029	32	2.1	32	100	0	136	26	17	25	30	1.97
1664488--1664524	9	4.1	9	89	0	56	27	10	16	45	1.80
1664578--1664608	9	3.4	9	90	0	53	38	22	12	25	1.90
1666212--1666260	25	2.0	25	83	0	62	36	16	12	34	1.86
1666588--1666640	18	2.9	18	83	5	63	35	18	3	41	1.69
1669351--1669447	42	2.3	42	87	0	122	24	35	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669372--1669454	42	2.0	42	90	0	130	24	32	16	26	1.96
1669323--1669448	21	6.0	21	73	3	110	24	35	17	22	1.95
1677958--1678008	21	2.3	23	80	16	63	33	3	0	62	1.13
1684892--1684930	19	2.1	19	85	9	53	38	7	0	53	1.30
1685162--1685242	39	2.1	38	81	6	92	54	7	1	37	1.37
1686250--1686311	3	21.0	3	96	3	117	67	0	0	32	0.91
1689482--1689511	15	2.1	14	93	6	51	56	0	0	43	0.99
1706810--1706838	7	4.1	7	100	0	58	86	0	13	0	0.58
1713320--1713368	21	2.3	22	92	3	82	61	10	2	26	1.39
1715120--1715148	12	2.3	13	94	5	51	44	31	3	20	1.68
1715150--1715206	28	2.0	29	83	10	73	45	1	1	50	1.22
1727633--1727672	21	1.9	21	89	0	62	37	2	10	50	1.50
1729436--1729558	63	2.0	63	91	3	203	32	13	11	43	1.79
1731349--1731876	44	11.7	44	74	10	359	33	18	20	28	1.96
1731349--1731876	89	5.8	89	76	7	456	33	18	20	28	1.96
1732145--1732180	18	2.0	18	88	0	54	63	19	2	13	1.41
1750886--1750943	29	2.0	29	93	0	98	55	0	3	41	1.17
1760546--1760806	129	2.0	130	93	0	443	29	24	19	27	1.98
1774915--1774944	3	10.0	3	100	0	60	0	33	0	66	0.92
1775059--1775127	30	2.4	28	85	9	93	24	8	17	49	1.75
1776095--1776131	3	12.3	3	100	0	74	0	32	0	67	0.91
1784209--1784267	29	2.0	29	81	12	68	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784543--1784673	67	2.0	67	89	0	199	27	22	18	32	1.97
1785864--1785900	3	12.3	3	100	0	74	0	35	0	64	0.94
1797455--1798101	42	15.5	42	88	1	935	29	21	19	30	1.97
1797498--1798101	84	7.2	84	98	0	1149	29	21	19	30	1.97
1799650--1799702	16	3.2	16	78	7	52	35	1	1	60	1.19
1805121--1805216	25	3.9	25	76	13	83	31	19	22	26	1.98
1805118--1805234	49	2.4	50	82	8	141	31	19	23	25	1.98
1805156--1805234	25	3.2	26	79	15	96	31	18	25	24	1.98
1812438--1812482	23	2.0	23	86	0	63	51	0	2	46	1.13
1822209--1822265	23	2.7	20	86	10	69	68	8	14	8	1.39
1822955--1823008	20	2.5	23	74	20	62	35	0	1	62	1.06
1822963--1823020	21	3.0	20	76	16	59	32	0	3	63	1.11
1823494--1823558	23	2.9	23	70	19	55	53	4	0	41	1.21
1827390--1827458	23	2.9	24	73	2	77	44	18	10	26	1.81
1836327--1836361	18	2.0	17	88	5	52	45	0	0	54	0.99
1836594--1836632	16	2.4	16	86	0	51	28	33	2	35	1.71
1836607--1836663	16	3.6	16	95	0	87	33	36	0	29	1.58
1839618--1839655	19	2.1	19	85	5	51	52	5	13	28	1.61
1848417--1848692	112	2.5	111	77	6	277	30	19	23	25	1.98
1848799--1849263	210	2.2	209	78	6	472	32	19	22	25	1.98
1855663--1855702	16	2.5	17	84	11	50	55	35	5	5	1.44
1857808--1857844	18	2.1	18	100	0	74	21	21	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1861292--1861338	16	3.1	15	80	14	51	87	2	4	6	0.74
1861314--1861339	10	2.6	10	100	0	52	88	0	0	11	0.52
1861364--1861401	6	6.0	6	88	11	58	81	0	18	0	0.69
1862232--1862271	7	6.0	7	88	11	66	72	0	15	12	1.12
1862233--1862271	13	3.0	13	96	0	69	71	0	15	12	1.14
1862232--1862268	20	1.9	20	94	5	67	75	0	13	10	1.04
1866640--1866704	21	3.1	21	88	4	96	35	20	43	1	1.61
1881263--1881379	52	2.2	52	81	3	137	25	23	19	30	1.98
1891298--1891414	52	2.2	52	81	3	137	25	23	19	30	1.98
1898061--1898178	3	39.3	3	74	0	74	58	1	10	29	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136