genome.fa.s10.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  88  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29182240--29182298	27	2.2	27	93	0	100	33	0	0	66	0.92
29182240--29182305	27	2.5	27	85	2	71	34	0	0	65	0.93
29182248--29182305	27	2.1	27	87	0	80	31	0	0	68	0.89
29182964--29183103	72	1.9	73	95	1	255	39	5	24	30	1.78
29187949--29187988	13	3.1	13	81	0	53	35	5	15	45	1.68
29189387--29189436	21	2.4	21	86	6	66	52	0	0	48	1.00
29189401--29189440	19	2.0	21	85	9	57	57	0	0	42	0.98
29197592--29197629	19	2.1	18	85	9	51	50	0	7	42	1.31
29199385--29199645	133	2.0	133	81	7	316	36	18	11	34	1.87
29199714--29199764	26	2.0	24	85	7	66	43	5	7	43	1.57
29213464--29213499	18	2.0	18	100	0	72	33	11	33	22	1.89
29216910--29216948	19	2.1	19	85	0	51	61	0	0	38	0.96
29224988--29225021	17	1.9	17	88	5	50	55	0	8	35	1.31
29229767--29229817	24	2.0	25	82	17	61	33	9	3	52	1.53
29241731--29241893	80	2.0	80	90	2	256	23	15	22	38	1.92
29242057--29242113	30	1.9	30	89	7	89	63	0	0	36	0.95
29262139--29262168	6	5.0	6	100	0	60	50	16	33	0	1.46
29269474--29269682	101	2.1	101	84	0	265	34	15	21	28	1.93
29276129--29276445	158	2.0	159	99	0	627	37	3	11	47	1.58
29277558--29277710	49	3.1	48	79	12	161	18	28	9	43	1.80
29279633--29279782	43	3.5	43	76	1	140	24	16	29	30	1.97
29281840--29281884	20	2.4	18	85	10	63	15	26	11	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29283880--29284028	21	7.1	21	70	7	97	44	16	20	18	1.86
29283880--29284033	42	3.7	42	79	6	152	45	16	20	17	1.85
29283880--29284033	84	1.8	83	86	4	220	45	16	20	17	1.85
29289736--29289767	8	3.9	8	92	8	55	50	0	0	50	1.00
29296934--29296977	17	2.4	19	88	7	65	59	0	0	40	0.98
29296934--29296977	9	4.9	9	81	8	54	59	0	0	40	0.98
29300514--29300719	49	4.2	49	98	0	394	27	5	19	47	1.72
29306579--29306688	58	1.9	58	88	3	168	29	12	20	37	1.90
29306811--29306937	48	2.6	48	82	7	157	21	30	14	33	1.93
29306954--29307172	49	4.5	48	74	7	154	21	26	17	35	1.95
29306901--29307172	147	1.9	147	79	4	316	22	26	16	34	1.95
29307103--29307226	48	2.6	48	83	6	135	19	25	20	34	1.96
29309061--29309171	42	2.6	42	90	2	161	14	21	18	45	1.84
29309061--29309186	21	6.1	20	66	10	67	13	22	19	45	1.85
29311975--29312128	21	7.3	21	69	8	107	14	21	18	46	1.84
29311974--29312130	42	3.7	42	84	6	210	14	21	17	45	1.84
29322533--29322592	30	2.0	30	81	9	70	43	10	1	45	1.47
29324639--29324687	24	2.0	24	88	8	71	46	10	8	34	1.67
29325526--29325568	11	4.1	10	79	8	50	18	0	9	72	1.11
29327842--29327925	21	4.1	21	86	3	91	46	16	20	16	1.84
29328758--29328796	17	2.3	17	86	8	53	30	0	20	48	1.50
29328935--29329044	21	5.3	21	78	4	116	15	20	16	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29328934--29329044	42	2.7	40	83	5	134	15	19	16	48	1.81
29328943--29329044	40	2.5	42	82	6	129	16	19	16	47	1.83
29332027--29332166	68	2.1	68	97	0	262	27	17	18	37	1.93
29343342--29343411	5	14.2	5	82	8	90	62	1	0	35	1.04
29350452--29350545	46	2.0	46	87	0	134	41	7	19	31	1.79
29359413--29359442	3	10.0	3	100	0	60	66	0	33	0	0.92
29366139--29366210	37	2.0	36	86	2	99	12	20	19	47	1.82
29370359--29370403	20	2.1	21	88	8	65	53	4	22	20	1.63
29372157--29372188	6	5.3	6	96	0	55	34	12	34	18	1.89
29375026--29375094	34	2.0	34	94	0	120	30	18	15	34	1.93
29375111--29375164	19	2.8	19	74	23	58	27	0	24	48	1.52
29376178--29376202	10	2.5	10	100	0	50	20	0	28	52	1.47
29381572--29381629	20	2.7	21	76	7	64	62	27	3	6	1.37
29385931--29385982	3	17.3	3	88	7	79	32	0	1	65	1.04
29385910--29385982	33	2.2	33	83	7	87	32	2	1	63	1.17
29385930--29385996	30	2.3	31	82	10	86	32	1	2	62	1.19
29386353--29386390	18	2.1	18	90	9	60	23	2	2	71	1.12
29386507--29387040	109	4.9	109	90	1	815	30	16	18	34	1.93
29387423--29387486	24	2.7	24	90	0	101	32	17	15	34	1.91
29389784--29389873	10	9.0	9	71	19	56	42	4	0	53	1.21
29389783--29389871	20	4.5	19	72	12	72	42	4	0	52	1.21
29389984--29390059	39	1.9	39	84	5	100	23	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29393644--29393668	6	4.2	6	100	0	50	36	16	32	16	1.90
29399737--29399804	26	2.6	25	84	13	77	66	0	5	27	1.15
29399736--29399804	22	3.0	22	82	16	70	65	0	5	28	1.16
29399740--29399804	4	15.0	4	76	17	51	66	0	4	29	1.12
29399759--29399819	13	4.7	13	75	18	56	72	0	8	19	1.10
29400787--29400863	37	2.1	38	85	2	102	22	18	25	33	1.96
29404741--29404905	24	6.8	24	72	12	122	33	23	27	15	1.95
29404712--29404823	49	2.3	49	84	6	138	31	23	26	18	1.98
29404712--29404905	25	7.9	25	75	14	147	33	22	26	17	1.96
29406832--29406868	19	2.0	18	89	5	56	45	21	0	32	1.52
29406878--29406921	23	1.9	23	86	9	63	43	0	0	56	0.99
29407701--29407738	13	2.8	14	80	8	51	34	0	0	65	0.93
29409797--29409823	12	2.2	12	100	0	54	51	0	40	7	1.30
29410401--29410430	2	15.5	2	93	6	53	53	0	0	46	1.00
29412014--29412056	8	5.4	8	85	0	59	34	11	2	51	1.51
29421877--29421926	11	4.3	11	78	12	55	34	0	4	62	1.14
29421846--29421930	27	3.2	26	71	18	66	38	0	3	57	1.16
29432085--29432116	7	4.6	7	100	0	64	28	15	0	56	1.40
29440758--29440795	17	2.2	17	100	0	76	60	13	15	10	1.59
29448048--29448085	18	2.1	18	100	0	76	44	15	15	23	1.85
29451594--29451635	22	1.9	22	85	9	59	35	0	2	61	1.09
29454386--29454447	32	1.9	33	86	3	90	45	3	3	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29463575--29463725	42	3.6	42	77	0	140	44	15	23	16	1.86
29469152--29469197	20	2.5	17	82	10	56	45	0	2	52	1.13
29472142--29474857	992	2.8	984	84	5	3497	40	15	10	32	1.83
29489367--29489394	2	14.0	2	100	0	56	50	0	0	50	1.00
29494723--29495003	139	2.0	139	98	0	544	38	13	18	29	1.89
29498255--29498525	136	2.0	136	100	0	542	41	15	16	26	1.88
29514954--29514993	21	1.9	21	85	10	55	57	20	5	17	1.58
29515818--29515868	11	4.6	11	90	4	77	21	33	0	45	1.52
29515817--29515872	22	2.5	22	86	11	87	21	30	0	48	1.51
29516836--29516861	8	3.2	8	100	0	52	65	0	23	11	1.25
29517467--29517509	18	2.4	18	80	0	50	30	2	0	67	1.03
29520879--29520914	18	1.9	18	88	5	54	63	0	30	5	1.17
29534386--29534411	9	2.9	9	100	0	52	23	7	0	69	1.14
29539343--29539384	11	3.7	11	85	14	59	59	0	2	38	1.10
29540864--29540903	21	1.9	21	94	0	71	57	10	10	22	1.61
29543524--29543553	2	15.0	2	100	0	60	50	0	50	0	1.00
29546920--29546963	21	2.1	21	87	4	63	52	2	0	45	1.13
29548629--29548659	6	5.2	6	100	0	62	32	0	0	67	0.91
29555642--29555718	36	2.1	36	100	0	154	44	7	10	37	1.68
29568071--29568099	2	14.5	2	100	0	58	51	0	48	0	1.00
29572952--29572998	21	2.3	21	85	7	62	36	12	10	40	1.78
29576447--29576491	23	1.9	24	86	4	65	73	4	8	13	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29577696--29577722	14	1.9	14	100	0	54	48	14	14	22	1.81
29577795--29577856	24	2.5	24	84	2	79	33	16	27	22	1.95
29582916--29583095	81	2.2	81	84	3	229	42	18	15	23	1.89
29582916--29583231	27	11.7	26	77	6	179	41	20	15	22	1.90
29583263--29583359	24	4.0	24	86	6	126	24	8	23	43	1.81
29583268--29583373	24	4.4	24	86	0	113	23	7	23	45	1.78
29583265--29583373	48	2.3	47	84	6	139	24	7	22	44	1.78
29583516--29583613	32	3.1	32	75	4	108	20	18	21	39	1.92
29590926--29590978	17	3.1	17	83	0	70	49	3	20	26	1.66
29593640--29593668	14	2.0	15	93	6	51	72	6	0	20	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136