genome.fa.s10.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  41  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13448750--13448832	25	3.4	25	78	9	107	33	16	24	25	1.96
13452665--13452697	17	1.9	17	93	0	57	72	9	0	18	1.10
13452670--13452706	17	2.2	17	90	0	56	72	16	0	10	1.10
13462828--13462879	24	2.2	24	89	0	77	55	9	1	32	1.43
13467656--13467961	80	3.9	78	88	3	443	55	10	6	26	1.59
13467656--13467961	158	1.9	158	87	3	447	55	10	6	26	1.59
13476990--13477114	40	3.2	39	75	4	117	39	16	19	25	1.91
13477177--13477366	41	4.7	40	84	2	236	24	20	26	29	1.99
13477177--13477366	81	2.3	81	85	0	245	24	20	26	29	1.99
13479913--13479943	12	2.5	13	94	5	55	41	19	29	9	1.83
13481098--13481262	43	3.8	44	87	3	219	24	18	28	28	1.98
13481098--13481284	43	4.3	44	83	4	202	26	19	26	27	1.99
13481066--13481262	86	2.3	86	83	4	238	23	17	28	30	1.97
13481302--13481361	27	2.2	27	100	0	120	15	31	20	33	1.93
13481383--13481425	22	2.0	22	85	0	59	41	25	18	13	1.88
13487677--13487716	18	2.2	19	86	4	55	35	0	0	65	0.93
13492578--13492621	24	1.9	24	81	9	56	27	25	4	43	1.74
13493382--13493425	7	6.1	7	89	2	61	25	0	40	34	1.56
13495850--13495889	21	1.9	21	89	0	62	37	7	0	55	1.29
13500716--13500814	23	4.3	23	76	12	105	26	18	23	32	1.97
13500719--13500807	46	1.9	46	93	0	151	25	17	23	32	1.97
13506697--13506725	15	2.0	15	93	6	51	34	0	10	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13511511--13511539	3	9.7	3	100	0	58	34	0	0	65	0.93
13533187--13533228	15	2.7	15	88	3	57	47	19	16	16	1.83
13533187--13533236	16	3.2	15	85	5	64	42	20	20	18	1.90
13533605--13533629	2	12.5	2	100	0	50	48	0	0	52	1.00
13535138--13535184	18	2.6	18	77	12	51	48	4	4	42	1.42
13538280--13538348	25	2.8	25	84	0	84	20	28	21	28	1.98
13538263--13538372	25	4.4	25	79	4	80	20	27	22	30	1.98
13540161--13540208	24	2.0	24	83	0	60	25	29	18	27	1.98
13540329--13540408	25	3.2	24	70	18	74	21	31	20	27	1.98
13548261--13548306	8	5.4	8	85	14	65	76	0	10	13	1.03
13549749--13549843	31	3.1	29	72	17	77	31	13	8	46	1.73
13549726--13549814	29	3.0	29	72	18	83	30	12	11	46	1.76
13549726--13549843	60	2.0	60	84	0	155	29	12	11	46	1.76
13550396--13550443	14	3.4	14	79	2	60	66	2	0	31	1.03
13550371--13550447	28	2.6	29	79	20	81	62	1	2	33	1.17
13553580--13553643	19	3.5	17	80	16	74	45	9	0	45	1.36
13553592--13553643	9	5.7	9	90	4	86	42	9	0	48	1.36
13554102--13554245	76	1.9	76	82	2	182	31	20	17	31	1.95
13559525--13559571	5	9.4	5	77	9	51	40	19	0	40	1.51
13561501--13561552	25	2.1	26	89	7	81	59	7	0	32	1.26
13566512--13566563	24	2.2	24	92	0	86	51	9	1	36	1.46
13573848--13573914	25	2.5	24	88	9	80	31	5	0	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13573848--13574249	26	15.2	26	72	13	241	30	7	3	58	1.42
13574040--13574125	28	3.2	27	79	9	97	30	6	1	61	1.29
13574198--13574245	24	2.0	23	88	4	69	29	10	4	56	1.52
13584000--13584035	19	1.9	20	88	11	58	61	0	0	38	0.96
13586883--13587219	168	2.0	169	99	0	667	41	7	6	43	1.59
13589388--13589450	31	2.0	31	96	0	117	33	7	14	44	1.74
13602119--13602546	44	9.9	44	71	12	280	29	20	21	27	1.98
13602085--13602600	173	3.0	173	93	0	863	29	20	22	27	1.98
13602294--13602528	129	1.8	128	80	8	280	28	22	21	28	1.99
13602076--13602585	44	11.7	44	70	9	242	29	20	21	27	1.98
13602772--13602891	45	2.7	43	73	15	102	29	17	25	27	1.98
13602859--13602942	44	1.9	44	82	0	105	33	17	19	29	1.95
13609317--13609351	18	2.0	17	88	5	52	45	0	0	54	0.99
13609587--13609622	16	2.2	16	95	0	63	41	36	0	22	1.54
13615284--13615314	6	5.2	6	100	0	62	67	0	0	32	0.91
13624795--13624881	43	2.0	42	84	2	111	34	17	20	27	1.95
13629040--13629094	25	2.2	25	90	0	83	49	1	29	20	1.59
13629171--13629331	83	1.9	83	81	5	191	26	18	15	39	1.91
13632727--13632777	12	4.3	12	82	2	50	78	7	5	7	1.09
13634184--13634238	19	2.9	19	71	12	51	65	1	14	18	1.36
13634237--13634267	16	1.9	16	93	0	53	83	0	6	9	0.79
13640631--13640685	25	2.3	25	76	17	64	54	7	3	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13647027--13647059	4	8.2	4	93	0	57	21	0	3	75	0.93
13653046--13653314	44	6.1	45	74	5	181	31	19	21	27	1.97
13653048--13653295	89	2.8	89	83	3	286	29	19	22	28	1.98
13653182--13653781	143	4.2	143	84	2	717	30	19	22	27	1.98
13653832--13653997	45	3.7	45	81	2	165	32	21	20	25	1.97
13657674--13657713	19	2.2	18	86	4	53	35	0	5	60	1.19
13659174--13659204	9	3.4	9	90	0	53	38	22	12	25	1.90
13662692--13662716	6	4.2	6	100	0	50	68	0	16	16	1.22
13665060--13665236	92	1.9	92	89	2	275	44	9	21	24	1.82
13667784--13667848	24	2.7	24	73	20	71	18	7	6	67	1.36
13667827--13667872	22	2.1	21	84	15	58	15	6	4	73	1.19
13671304--13671406	30	3.4	30	89	2	154	24	21	26	28	1.99
13671270--13671406	60	2.3	60	87	2	186	26	22	24	26	2.00
13674019--13674072	21	2.6	21	87	0	81	35	3	0	61	1.14
13674118--13674159	21	1.9	22	90	9	68	61	0	0	38	0.96
13674226--13674286	24	2.5	24	83	2	77	75	4	4	14	1.14
13679356--13679421	35	1.9	34	87	9	98	51	1	7	39	1.40
13680874--13680917	19	2.3	20	85	14	58	52	0	22	25	1.48
13690685--13690726	19	2.2	19	86	0	57	66	2	2	28	1.16
13696496--13696694	102	2.0	102	93	2	346	20	19	28	32	1.97
13698101--13698211	49	2.4	47	87	6	163	29	15	6	48	1.69
13703085--13703272	100	1.9	100	90	4	301	45	12	7	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13704510--13704539	15	1.9	16	93	6	53	63	3	0	33	1.11
13706687--13706853	28	6.5	25	66	18	69	56	1	13	28	1.44
13706687--13706898	76	2.8	76	82	4	230	55	1	13	29	1.49
13706686--13706897	27	8.1	27	62	16	81	55	1	13	29	1.49
13706867--13707063	48	4.3	47	74	12	162	58	1	11	28	1.40
13706976--13707047	21	3.4	22	70	14	62	62	0	6	30	1.21
13707021--13707061	19	2.2	19	86	8	57	63	0	7	29	1.21
13707057--13707086	12	2.6	12	94	5	53	43	0	30	26	1.55
13707057--13707135	5	14.6	5	72	15	50	55	0	21	22	1.43
13707057--13707133	11	7.0	11	80	5	66	55	0	20	23	1.43
13707057--13707135	16	4.8	16	76	3	68	55	0	21	22	1.43
13709220--13709318	50	1.9	53	86	10	143	36	14	17	32	1.89
13712424--13712490	32	2.1	32	100	0	134	35	2	8	52	1.48
13712548--13712597	21	2.3	23	80	16	61	52	0	4	44	1.20
13712716--13712768	20	2.8	19	80	8	56	28	0	5	66	1.15
13713299--13713362	31	2.1	31	96	0	119	43	6	10	39	1.65
13717298--13717333	3	12.0	3	100	0	72	66	0	0	33	0.92
13725758--13725783	3	8.7	3	100	0	52	0	30	0	69	0.89
13725858--13725934	22	3.4	22	67	19	68	35	2	25	36	1.70
13725853--13725947	46	2.1	46	100	0	190	33	2	23	41	1.66
13729116--13729343	44	5.2	44	84	4	271	28	24	17	29	1.97
13728962--13729343	89	4.3	88	75	12	316	28	24	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13729318--13729366	21	2.3	21	78	0	62	26	28	10	34	1.89
13745885--13746091	20	10.4	19	69	10	85	13	31	20	34	1.91
13745873--13745950	40	2.0	40	82	5	95	21	29	17	30	1.97
13745878--13746039	60	2.7	60	80	1	164	16	30	19	33	1.93
13745942--13746080	60	2.3	59	85	3	179	10	30	21	36	1.88
13748076--13748170	44	2.2	42	81	7	102	27	18	24	29	1.98
13753356--13753380	8	3.1	8	100	0	50	24	0	0	76	0.80
13758414--13758438	7	3.6	7	100	0	50	12	0	40	48	1.40
13758511--13758796	126	2.3	126	88	1	412	32	19	20	27	1.97
13759162--13759209	21	2.3	21	85	0	60	4	27	41	27	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136