genome.fa.s10.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  38  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12416493--12416553	27	2.3	27	82	5	70	37	13	24	24	1.91
12420557--12420598	13	3.0	14	82	6	50	45	7	4	42	1.52
12427359--12427416	19	2.7	22	84	10	68	36	8	17	37	1.80
12427690--12427784	3	31.0	3	72	16	61	28	2	4	65	1.23
12427686--12427722	7	5.4	7	93	6	67	27	0	0	72	0.84
12427920--12427952	17	1.9	17	93	0	57	36	12	0	51	1.39
12432636--12433160	44	11.9	44	74	8	395	28	16	26	28	1.97
12432636--12433160	88	6.0	87	75	7	445	28	16	26	28	1.97
12432619--12433158	132	4.1	132	93	0	873	28	16	26	28	1.97
12433179--12433320	43	3.3	43	67	7	124	25	29	28	16	1.97
12433202--12433328	44	2.9	43	66	11	114	25	28	27	18	1.98
12433152--12433328	88	2.0	88	94	0	309	27	28	25	18	1.98
12433329--12433535	44	4.7	44	84	3	283	27	17	26	28	1.98
12434315--12434372	19	2.7	22	84	10	68	36	8	17	37	1.80
12447538--12447578	1	41.0	1	95	0	64	0	4	0	95	0.28
12447880--12447917	20	1.9	20	88	0	58	52	0	0	47	1.00
12452329--12452388	21	2.5	24	84	15	81	50	1	3	45	1.28
12453592--12453642	12	3.9	13	73	16	52	68	0	9	21	1.18
12453678--12453769	43	2.1	43	82	7	107	50	1	7	41	1.38
12462365--12462424	21	2.5	24	84	15	81	50	1	3	45	1.28
12463921--12464089	3	57.0	3	67	11	62	60	4	5	28	1.41
12463921--12463987	33	2.0	33	82	5	82	59	4	4	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12465470--12465740	100	2.7	100	84	1	355	23	20	23	32	1.98
12465482--12465740	50	5.2	49	70	9	182	23	20	23	32	1.98
12472937--12473099	3	55.0	3	67	9	57	60	4	6	28	1.42
12474449--12474739	100	2.9	100	85	0	393	23	19	23	33	1.97
12474475--12474724	50	5.0	50	75	1	232	23	20	23	33	1.97
12475271--12475306	14	2.6	14	100	0	72	13	13	27	44	1.82
12478513--12478554	19	2.2	19	87	8	59	71	0	2	26	0.98
12491463--12491511	19	2.5	19	86	3	71	55	2	12	30	1.48
12493284--12493326	10	4.1	10	82	11	50	34	0	6	58	1.25
12504486--12504641	47	3.3	47	81	2	179	42	17	14	25	1.87
12504562--12504843	69	4.1	69	89	0	429	42	18	13	24	1.87
12504686--12504732	11	4.3	11	78	10	51	44	21	6	27	1.76
12504609--12504843	22	10.3	22	69	8	119	42	17	14	25	1.87
12507856--12507921	27	2.4	27	84	2	78	21	21	24	33	1.97
12512734--12512793	27	2.2	27	80	11	68	41	18	13	26	1.87
12513809--12513833	5	5.0	5	100	0	50	80	0	0	20	0.72
12516522--12516580	24	2.4	25	82	2	66	16	27	22	33	1.95
12528125--12528183	29	2.0	29	84	12	77	30	28	1	38	1.67
12542553--12542607	14	4.1	13	81	9	65	27	1	5	65	1.25
12542553--12542607	27	2.0	27	86	6	76	27	1	5	65	1.25
12548829--12548923	47	2.0	48	97	2	183	23	15	23	37	1.93
12548842--12548916	23	3.2	23	63	10	62	22	17	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12549088--12549153	23	2.8	24	70	9	64	72	9	7	10	1.27
12549057--12549178	52	2.3	50	83	5	145	73	6	11	8	1.24
12549540--12549567	6	4.7	6	100	0	56	71	0	14	14	1.15
12549539--12549576	12	2.7	15	84	15	55	73	0	13	13	1.09
12550808--12551927	86	13.0	86	88	2	1520	29	23	23	23	1.99
12551030--12551165	43	3.2	43	64	15	109	26	22	25	25	2.00
12551973--12552214	129	1.9	129	91	1	396	31	19	19	29	1.96
12551993--12552171	44	4.1	43	69	9	132	30	17	21	30	1.96
12551973--12552243	129	2.1	129	86	2	375	31	18	21	28	1.97
12552336--12552458	44	2.8	44	78	2	122	27	20	25	26	1.99
12553933--12553966	16	2.1	16	88	0	50	35	8	2	52	1.47
12555384--12555414	9	3.4	9	90	0	53	25	12	22	38	1.90
12556259--12556289	5	6.2	5	100	0	62	19	19	19	41	1.90
12564112--12564169	30	1.9	31	89	3	91	39	8	3	48	1.51
12564795--12564827	14	2.4	14	90	5	50	57	0	6	36	1.23
12565100--12565173	31	2.4	31	88	2	105	39	13	10	36	1.80
12570827--12570858	15	2.1	15	94	0	55	21	3	6	68	1.26
12572474--12572546	26	2.7	26	78	18	78	46	4	2	46	1.36
12572567--12572614	12	4.1	12	75	24	57	50	2	0	47	1.12
12574744--12574816	26	2.8	26	83	4	85	41	8	19	31	1.81
12593497--12593533	3	12.3	3	100	0	74	32	0	0	67	0.91
12603465--12603499	17	2.1	17	100	0	70	11	11	17	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12604206--12604304	43	2.3	43	85	3	146	27	15	17	40	1.89
12604573--12604621	16	3.1	16	82	8	64	24	30	4	40	1.74
12604976--12605123	47	3.2	47	72	16	164	45	2	3	48	1.33
12604961--12605088	44	2.8	44	72	16	127	46	3	3	46	1.37
12605538--12606127	9	65.4	9	97	1	1119	22	11	32	34	1.89
12609262--12609306	16	2.9	16	83	9	58	51	0	6	42	1.28
12618471--12618538	22	3.2	22	68	8	68	45	14	19	20	1.85
12618459--12618553	42	2.3	42	96	0	172	43	14	18	23	1.87
12618482--12618550	20	3.3	20	70	7	66	44	17	17	20	1.86
12627241--12627388	25	6.0	25	75	15	121	32	21	22	22	1.98
12627261--12627388	25	5.2	25	78	14	140	34	21	22	21	1.97
12627216--12627388	49	3.5	49	89	2	249	31	21	23	23	1.98
12628639--12628679	19	2.2	19	95	0	73	51	24	4	19	1.66
12633326--12633399	20	3.8	19	75	10	69	14	28	21	35	1.93
12633356--12633425	20	3.5	20	75	11	65	17	30	21	31	1.96
12634315--12634348	18	1.9	18	88	5	52	29	17	2	50	1.61
12640170--12640223	23	2.3	23	87	6	74	35	14	24	25	1.94
12642977--12643019	22	2.0	21	82	13	52	60	2	4	32	1.30
12644155--12644256	44	2.3	44	87	0	150	17	14	24	43	1.87
12646469--12646510	20	2.1	20	100	0	84	28	11	0	59	1.33
12647553--12647595	11	3.9	11	84	0	59	41	4	6	46	1.51
12654779--12654897	60	2.0	60	88	0	175	17	21	30	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12654928--12655145	120	1.8	120	81	2	276	20	20	26	33	1.97
12654928--12655145	60	3.6	60	80	2	231	20	20	26	33	1.97
12661026--12661066	21	2.0	21	90	4	66	75	4	0	19	0.98
12664139--12664171	14	2.4	14	94	0	57	75	3	0	21	0.93
12672337--12672418	38	2.2	38	84	2	103	23	12	36	28	1.90
12677394--12677585	63	3.1	63	80	0	206	26	22	29	21	1.99
12683035--12683226	63	3.0	62	82	3	224	22	23	30	23	1.99
12687413--12687437	3	8.3	3	100	0	50	68	0	32	0	0.90
12692604--12692693	40	2.2	40	76	7	94	12	30	21	36	1.90
12698977--12699096	43	2.8	42	77	6	125	30	15	15	37	1.90
12699265--12699387	25	4.9	25	83	0	120	34	7	23	34	1.83
12699251--12699407	75	2.1	72	82	3	188	35	7	22	34	1.83
12699575--12699606	16	2.0	16	93	0	55	25	34	18	21	1.96
12699857--12699996	22	6.2	22	69	5	84	31	12	22	33	1.91
12699832--12699985	45	3.4	45	80	0	157	33	12	22	32	1.91
12700552--12700594	17	2.5	17	88	0	59	27	2	18	51	1.59
12702697--12702836	50	2.7	52	87	5	196	30	30	16	23	1.96
12705958--12706103	49	3.0	48	86	5	211	31	28	13	26	1.93
12708712--12708744	14	2.5	13	90	9	50	39	27	9	24	1.85
12708616--12708802	51	3.7	50	79	5	205	29	27	18	24	1.98
12708609--12708833	102	2.2	102	82	4	267	30	27	17	24	1.97
12711068--12711092	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12714045--12714088	22	2.0	22	90	0	70	38	25	4	31	1.76
12717391--12717506	40	2.8	41	79	8	128	34	4	11	50	1.58
12717421--12717519	40	2.6	36	76	17	101	31	4	12	52	1.57
12719213--12719248	18	2.0	18	100	0	72	27	27	11	33	1.91
12722251--12722486	43	5.5	43	88	2	357	24	30	17	27	1.97
12722451--12722535	42	2.1	42	80	4	102	29	20	20	30	1.97
12722836--12723033	86	2.3	87	85	0	272	12	28	17	41	1.86
12725295--12725521	9	25.2	9	70	15	114	36	2	18	42	1.65
12725295--12725459	56	3.4	47	74	17	140	36	2	19	41	1.65
12725341--12725613	56	4.8	56	77	12	263	35	2	18	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136