genome.fa.s10.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  130  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44860806--44860943	31	4.6	31	67	14	92	40	12	5	42	1.64
44862411--44862445	17	2.1	17	94	0	61	45	0	0	54	0.99
44862929--44862957	14	2.1	14	100	0	58	65	13	6	13	1.45
44862984--44863032	11	4.5	11	89	0	80	67	24	0	8	1.18
44869726--44869774	25	2.0	24	84	11	64	40	2	20	36	1.64
44872446--44872487	15	2.8	15	85	0	57	52	19	0	28	1.46
44877902--44877934	6	5.5	6	96	0	57	12	15	54	18	1.71
44879422--44879446	7	3.6	7	100	0	50	88	0	0	12	0.53
44880049--44880115	34	1.9	35	85	8	93	11	4	4	79	1.03
44880827--44880890	32	2.0	32	90	0	101	37	10	9	42	1.73
44881536--44881573	20	1.9	20	88	0	58	13	23	26	36	1.91
44889855--44889933	31	2.6	31	76	9	81	32	2	2	62	1.22
44896101--44896156	20	2.8	20	75	2	60	39	39	7	14	1.73
44896066--44896137	26	2.7	27	79	12	85	40	37	6	15	1.74
44897414--44897730	157	2.0	158	99	0	627	46	15	6	31	1.70
44900604--44900642	3	13.0	3	100	0	78	66	0	0	33	0.92
44900560--44900621	29	2.1	29	82	5	72	54	6	12	25	1.62
44911385--44911438	16	3.4	16	86	0	63	42	5	20	31	1.75
44911615--44911738	58	2.1	58	89	2	187	52	4	0	43	1.20
44913798--44913929	36	3.6	35	82	10	147	6	28	12	53	1.63
44914955--44915085	69	1.9	71	85	3	185	23	7	25	42	1.80
44916205--44916288	37	2.3	36	83	8	107	41	13	11	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44916369--44916410	18	2.3	18	100	0	84	50	26	0	23	1.50
44921347--44921381	16	2.2	16	100	0	70	40	37	0	22	1.55
44922543--44922590	24	2.0	25	84	12	64	62	4	16	16	1.48
44922689--44922749	23	2.4	25	86	10	81	42	8	27	21	1.81
44922707--44922755	23	2.1	23	88	0	71	44	6	30	18	1.74
44946274--44946314	21	2.0	21	85	9	57	36	9	7	46	1.65
44949323--44949353	14	2.2	14	94	0	53	38	0	12	48	1.42
44953813--44953912	2	49.0	2	88	4	128	52	3	2	43	1.28
44954932--44954987	26	2.2	26	83	6	69	62	3	1	32	1.23
44959939--44960019	31	2.6	31	86	3	110	39	6	4	49	1.49
44965093--44965147	23	2.4	23	84	0	74	23	16	20	40	1.91
44968939--44968979	21	2.0	21	85	0	55	19	12	17	51	1.76
44977979--44978005	2	13.5	2	100	0	54	48	0	0	51	1.00
44980060--44981147	48	22.7	47	78	5	907	19	2	50	27	1.61
44980680--44980808	24	5.4	24	66	26	94	16	1	49	32	1.55
44981040--44981123	21	3.7	21	73	17	87	16	3	55	23	1.56
44980053--44981149	240	4.6	236	80	4	1079	19	2	50	27	1.60
44981109--44981267	66	2.4	66	81	2	176	21	5	44	28	1.73
44981132--44981252	36	3.6	33	69	15	95	20	6	44	28	1.76
44982415--44982500	27	3.4	27	70	18	76	24	3	50	22	1.65
44982505--44982568	27	2.5	27	82	7	80	18	6	50	25	1.70
44982821--44982906	21	3.8	21	77	16	91	24	1	55	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44982412--44983145	144	5.1	144	85	1	763	22	3	50	23	1.63
44982415--44983163	48	15.6	48	83	1	629	22	3	50	23	1.63
44983183--44983318	48	2.8	48	80	0	164	23	5	46	24	1.74
44983882--44984437	277	2.0	278	99	0	1105	38	14	8	37	1.77
44993605--44993663	21	3.0	20	73	7	57	38	3	1	55	1.26
45002444--45002476	16	2.1	16	88	5	50	21	24	0	54	1.45
45009265--45009443	89	2.0	90	98	1	351	37	7	10	44	1.67
45009834--45009945	29	3.9	29	82	5	138	34	20	4	40	1.73
45009833--45009946	58	2.0	58	87	3	167	35	21	4	39	1.73
45010288--45010374	13	7.0	13	76	18	64	63	0	36	0	0.95
45010290--45010374	3	26.3	3	79	13	73	64	0	35	0	0.94
45010479--45010535	27	2.1	27	83	6	71	75	10	14	0	1.05
45010589--45010635	15	3.4	15	72	22	57	25	48	25	0	1.51
45010586--45010643	26	2.2	26	100	0	116	25	46	27	0	1.53
45010634--45010664	16	1.9	16	93	0	53	41	29	29	0	1.56
45010662--45010701	11	3.6	12	77	16	50	80	0	20	0	0.72
45010660--45010701	21	1.9	21	90	9	66	80	0	19	0	0.70
45010848--45010893	22	2.0	23	84	12	60	32	0	2	65	1.05
45011025--45011059	16	2.2	16	89	0	52	31	11	5	51	1.61
45011175--45011310	18	7.4	18	75	10	116	30	14	11	44	1.80
45011177--45011281	39	2.8	39	84	5	144	35	12	10	41	1.77
45011295--45011348	28	1.9	28	88	0	81	44	11	9	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45011375--45011511	37	3.8	35	76	17	131	35	11	9	43	1.74
45011390--45011524	72	1.9	71	83	13	177	35	11	9	42	1.74
45016015--45016056	8	4.8	9	88	8	52	88	0	9	2	0.61
45016015--45016059	12	3.5	12	84	9	54	86	0	11	2	0.65
45016020--45016062	17	2.6	17	85	3	52	88	0	11	0	0.52
45018216--45018657	218	2.0	218	96	0	805	28	17	14	39	1.89
45039039--45039119	31	2.6	31	73	5	76	35	3	12	48	1.59
45040286--45040336	21	2.5	21	79	17	63	50	0	0	49	1.00
45041114--45041149	15	2.3	16	90	4	56	44	0	0	55	0.99
45055186--45055222	18	2.0	18	89	5	56	21	0	5	72	1.04
45057184--45057209	12	2.2	12	100	0	52	57	0	0	42	0.98
45062287--45062317	15	2.1	15	93	0	53	35	12	0	51	1.40
45062355--45062387	12	2.6	13	90	4	50	45	0	6	48	1.27
45065371--45065412	23	1.9	22	85	9	59	50	2	9	38	1.48
45071697--45071777	41	2.0	41	82	4	101	32	6	11	50	1.62
45083670--45083698	8	3.8	8	95	4	51	51	0	0	48	1.00
45092143--45092331	58	3.3	58	89	0	281	31	22	13	32	1.92
45092298--45092363	32	2.1	32	91	5	107	36	18	10	34	1.85
45092181--45092477	146	2.0	147	88	1	443	32	22	12	31	1.91
45092240--45092419	88	2.0	90	93	2	310	34	22	10	32	1.88
45092330--45092812	58	8.4	58	82	8	569	32	24	12	31	1.91
45099899--45100007	32	3.4	31	75	15	96	35	9	10	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45113212--45113252	19	2.2	19	95	0	73	19	12	31	36	1.89
45130301--45130347	24	2.0	24	91	0	76	14	23	8	53	1.69
45130316--45130497	41	4.5	39	78	8	168	21	23	7	47	1.76
45142511--45143746	681	1.8	675	100	0	2058	35	14	18	31	1.90
45145171--45145213	11	3.9	11	81	0	50	65	13	2	18	1.38
45145171--45145213	22	2.0	22	85	0	59	65	13	2	18	1.38
45149744--45149800	29	2.0	29	85	0	78	35	12	17	35	1.87
45149814--45149892	31	2.5	30	85	4	95	48	7	3	40	1.50
45149832--45149900	31	2.2	31	84	0	84	46	11	4	37	1.60
45152622--45152675	27	2.0	27	96	0	99	38	22	12	25	1.90
45157488--45157581	44	2.1	45	86	2	136	34	6	10	48	1.63
45159659--45159715	28	2.0	28	86	0	78	40	3	17	38	1.67
45166516--45166563	19	2.6	18	81	15	53	64	2	0	33	1.05
45169876--45169931	30	1.9	30	82	13	73	28	8	16	46	1.77
45176555--45176700	77	1.9	77	92	0	247	30	27	13	29	1.94
45183367--45183531	50	3.2	51	83	5	172	26	23	28	21	1.99
45185224--45185261	16	2.4	16	95	0	67	36	2	34	26	1.71
45185243--45185335	44	2.1	46	91	4	154	29	3	30	37	1.73
45185243--45185348	39	2.5	43	86	10	139	30	2	31	35	1.72
45185559--45185599	21	2.0	21	95	0	73	53	9	2	34	1.47
45195363--45195397	18	1.9	19	88	11	56	77	0	0	22	0.78
45195652--45195932	153	1.8	152	89	1	438	54	8	8	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45195862--45196007	75	2.0	74	91	1	238	56	8	2	32	1.43
45195933--45196534	154	3.9	151	87	6	849	52	8	9	30	1.63
45195933--45196534	155	3.9	153	88	6	864	52	8	9	30	1.63
45198005--45198037	16	2.0	17	88	5	50	36	3	9	51	1.49
45207858--45207930	36	2.0	36	97	0	137	34	16	21	27	1.95
45211295--45211369	24	3.5	24	69	25	76	28	6	4	61	1.39
45211653--45211722	28	2.7	26	85	10	97	51	4	7	37	1.49
45211658--45211719	28	2.2	28	94	0	106	48	4	8	38	1.54
45211714--45211747	16	2.0	18	88	11	54	55	0	5	38	1.24
45222144--45222202	27	2.2	26	79	8	66	25	1	3	69	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136