genome.fa.s10.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  36  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11735894--11735945	24	2.2	24	89	0	77	36	3	9	50	1.54
11737889--11737916	2	14.0	2	100	0	56	0	50	0	50	1.00
11742064--11742113	24	2.1	24	100	0	100	30	0	26	44	1.55
11751174--11751309	45	3.0	45	81	2	166	35	16	21	27	1.94
11756618--11756657	18	2.2	18	86	8	55	37	2	0	60	1.11
11757041--11757100	22	2.8	22	80	12	79	45	3	15	36	1.62
11758459--11758501	18	2.4	18	88	7	61	32	2	6	58	1.38
11758792--11758837	14	3.3	14	81	9	58	71	2	0	26	0.97
11763543--11763631	11	8.3	11	69	18	53	69	2	1	26	1.07
11763579--11763613	12	2.9	12	100	0	70	82	0	0	17	0.66
11763579--11763613	18	1.9	18	100	0	70	82	0	0	17	0.66
11764286--11764336	23	2.2	23	89	0	75	29	9	19	41	1.84
11766920--11766977	29	2.0	29	100	0	116	62	3	10	24	1.43
11771914--11771949	17	2.1	17	100	0	72	63	5	0	30	1.17
11773548--11773846	44	6.9	44	74	11	258	27	22	20	30	1.98
11773449--11774021	217	2.6	217	92	0	941	28	22	19	29	1.98
11779443--11780788	690	2.0	655	94	5	2377	27	22	17	30	1.96
11788840--11789127	146	2.0	146	95	0	513	34	14	11	38	1.83
11794293--11794386	45	2.1	46	97	2	181	54	2	21	22	1.55
11797132--11797177	17	2.6	17	93	6	74	52	19	8	19	1.72
11800633--11800752	51	2.4	51	78	2	134	28	15	25	30	1.96
11808247--11808337	46	2.0	46	89	4	139	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11808371--11808554	100	1.9	98	89	2	287	29	16	24	29	1.96
11808371--11808554	49	3.7	49	91	2	287	29	16	24	29	1.96
11808379--11808586	100	2.1	99	82	8	244	31	14	24	28	1.95
11826826--11826956	68	1.9	68	85	0	181	41	14	18	25	1.88
11829435--11830249	43	19.0	43	100	0	1630	37	9	18	34	1.83
11830808--11830899	36	2.5	35	82	8	103	65	4	6	23	1.35
11837535--11837574	20	2.0	21	85	5	55	57	15	5	22	1.57
11845589--11845621	17	1.9	17	88	11	50	33	12	27	27	1.92
11850619--11850678	30	2.0	30	100	0	120	36	0	20	43	1.52
11867247--11867297	26	2.0	26	92	0	84	41	15	7	35	1.76
11868877--11868914	19	2.0	19	100	0	76	42	10	0	47	1.38
11869311--11869345	9	3.8	9	92	3	52	17	22	0	60	1.37
11872380--11872576	98	2.0	99	98	1	387	26	20	17	35	1.94
11872729--11873646	338	2.7	338	90	1	1410	29	26	12	31	1.92
11876070--11876139	23	3.0	23	95	0	122	34	27	21	17	1.95
11880815--11880852	20	2.0	20	89	5	60	26	7	15	50	1.72
11885297--11885334	20	2.0	20	89	5	60	26	7	15	50	1.72
11887775--11887818	21	2.0	22	86	4	63	52	4	9	34	1.54
11890067--11890111	19	2.3	20	81	11	58	37	0	40	22	1.54
11895332--11895365	17	2.0	17	100	0	68	64	5	17	11	1.45
11896223--11896331	6	17.7	6	71	5	74	69	2	19	8	1.26
11896319--11896353	18	1.9	18	88	11	54	57	0	20	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11896341--11896379	18	2.3	18	86	8	55	69	0	17	12	1.19
11898398--11898426	13	2.2	13	100	0	58	13	10	24	51	1.72
11925010--11925043	10	3.6	9	88	11	50	76	0	0	23	0.79
11925079--11925122	19	2.3	19	85	14	56	61	2	2	34	1.21
11927105--11927158	19	3.0	19	76	7	60	66	1	1	29	1.12
11927175--11927238	19	3.4	19	73	0	65	64	4	4	26	1.33
11927491--11927515	12	2.1	12	100	0	50	16	8	0	76	1.02
11927529--11927573	19	2.3	19	80	3	54	33	2	0	64	1.06
11927739--11927914	93	1.9	92	84	3	237	35	10	17	36	1.85
11927992--11928195	86	2.3	86	77	11	211	36	16	10	35	1.84
11928409--11928493	29	2.9	28	78	13	91	58	2	7	31	1.37
11928719--11928793	28	2.6	30	81	12	86	32	1	4	62	1.22
11930315--11930421	50	2.1	50	94	0	187	40	19	10	29	1.85
11939111--11939180	6	11.5	6	77	8	61	77	2	0	20	0.90
11939111--11939182	13	5.3	13	78	16	67	76	2	0	20	0.91
11957732--11957776	18	2.5	18	85	7	65	44	17	0	37	1.49
11971126--11971166	20	2.0	20	100	0	82	46	9	9	34	1.70
11974658--11975003	172	2.0	174	98	1	678	44	7	9	38	1.65
11974968--11975059	26	3.5	25	76	18	82	60	4	3	31	1.32
11981877--11982425	138	4.0	138	78	2	496	38	20	21	19	1.93
11981879--11982434	69	8.1	69	76	3	413	38	19	21	19	1.93
11982491--11982660	54	3.2	54	73	5	173	35	15	14	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002214--12002404	95	2.0	95	97	0	364	30	28	4	36	1.78
12003287--12003620	51	6.7	50	73	12	226	30	26	16	25	1.97
12019160--12019418	42	6.2	42	84	2	319	30	19	19	30	1.96
12019160--12019418	84	3.1	83	89	2	396	30	19	19	30	1.96
12022743--12022803	27	2.3	27	85	5	79	36	22	24	16	1.94
12024801--12024825	11	2.3	11	100	0	50	24	12	0	64	1.27
12027734--12027777	20	2.2	20	84	8	54	54	6	6	31	1.53
12029946--12029971	12	2.2	12	100	0	52	7	15	30	46	1.74
12030040--12030211	73	2.4	72	85	4	229	27	23	24	23	2.00
12030104--12030438	114	2.9	114	92	0	546	24	22	27	25	2.00
12030228--12030624	186	2.1	186	97	0	749	25	22	26	25	2.00
12030347--12030511	73	2.3	73	94	0	285	26	23	25	24	2.00
12030414--12030855	113	3.9	114	90	3	665	26	22	26	25	2.00
12030747--12030928	73	2.4	74	87	7	260	28	22	24	25	2.00
12030638--12031042	191	2.2	186	93	3	686	26	21	25	26	2.00
12030824--12031045	114	1.9	114	90	1	356	25	21	26	26	2.00
12031186--12031987	142	5.6	142	99	0	1579	45	9	14	29	1.77
12031764--12032248	245	1.9	248	85	6	667	46	11	14	28	1.78
12038343--12038596	43	6.0	42	80	6	228	22	15	30	30	1.95
12038344--12038596	86	3.0	85	82	4	285	22	15	30	30	1.95
12040889--12040930	21	2.0	21	86	9	59	21	7	21	50	1.72
12045396--12045448	20	2.7	20	79	5	63	41	22	3	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045637--12045711	23	3.2	24	81	3	75	34	17	26	21	1.95
12052734--12052780	14	3.3	14	75	16	51	46	17	4	31	1.67
12052879--12052927	20	2.5	19	83	6	62	40	20	4	34	1.71
12053092--12053181	23	3.8	23	75	7	83	35	18	25	20	1.95
12053101--12053191	23	4.0	22	76	8	74	37	19	23	19	1.94
12053490--12053827	125	2.7	125	92	0	568	29	22	21	26	1.99
12053696--12054326	166	3.8	165	85	2	816	32	19	21	26	1.97
12053696--12054324	333	1.9	332	86	2	888	33	19	21	26	1.97
12054951--12054993	13	3.2	13	77	6	50	16	2	30	51	1.57
12059187--12059236	21	2.4	21	93	0	82	34	18	46	2	1.60
12059574--12059695	44	2.8	44	85	2	149	33	19	26	20	1.97
12059674--12059717	22	2.0	22	95	0	79	38	22	29	9	1.85
12059634--12059759	64	2.0	64	95	0	225	31	18	28	21	1.97
12059696--12059798	42	2.4	43	91	1	163	28	16	31	24	1.96
12059590--12059798	106	1.9	109	89	2	325	31	18	28	21	1.97
12059696--12059814	42	2.8	42	85	3	141	28	17	29	24	1.97
12061307--12061435	36	3.8	35	69	15	99	27	17	24	30	1.97
12061300--12061450	66	2.3	66	83	0	185	29	17	24	29	1.97
12061375--12061446	36	2.0	36	88	0	108	26	15	29	29	1.96
12061958--12062124	79	2.1	81	96	3	313	47	6	10	35	1.65
12067674--12067715	22	1.9	22	85	0	57	69	0	2	28	1.01
12068481--12068524	20	2.3	19	88	4	61	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12072569--12072644	26	2.9	26	76	9	75	36	14	23	25	1.93
12078243--12078362	42	2.8	43	84	2	145	27	15	24	32	1.96
12083053--12083099	23	2.0	23	100	0	94	42	12	4	40	1.63
12086711--12086817	30	3.6	30	93	0	178	19	21	35	23	1.96
12086743--12086817	15	5.0	15	68	12	64	20	20	36	24	1.95
12087112--12087153	22	2.0	21	85	4	57	28	16	11	42	1.84
12089773--12089813	12	3.3	13	80	10	50	17	4	0	78	0.93
12090713--12090761	25	2.0	24	84	15	64	69	6	12	12	1.35
12090780--12090856	6	13.5	6	73	13	65	76	3	2	16	1.05
12090754--12090816	27	2.3	27	84	10	76	74	6	1	17	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136