genome.fa.s10.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  117  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39675273--39675810	269	2.0	269	93	0	925	30	24	15	29	1.95
39678678--39678726	18	2.6	18	90	6	71	22	28	0	48	1.50
39678658--39678712	27	2.0	27	82	6	67	27	27	0	45	1.54
39681748--39681784	3	12.3	3	100	0	74	32	0	0	67	0.91
39682546--39682579	14	2.5	14	90	4	52	20	0	0	79	0.73
39682546--39682579	13	2.5	13	90	9	50	20	0	0	79	0.73
39682604--39682643	19	2.0	21	90	9	66	32	0	2	65	1.06
39689646--39689680	15	2.4	15	90	4	54	48	0	8	42	1.33
39692974--39693066	46	2.0	46	100	0	186	32	15	8	44	1.76
39694241--39694289	22	2.2	23	82	10	57	42	2	10	44	1.49
39694512--39694622	55	2.0	54	82	6	134	44	1	4	49	1.33
39694740--39694833	44	2.1	45	88	5	138	36	25	4	34	1.76
39694815--39694886	16	4.5	16	87	0	108	29	29	4	37	1.76
39699399--39699798	199	2.0	201	97	0	759	42	14	14	29	1.85
39700078--39700130	26	2.0	27	88	3	81	64	1	20	13	1.38
39701848--39701973	62	2.0	64	92	3	211	34	10	19	36	1.85
39704304--39704349	23	2.0	23	86	0	65	26	10	19	43	1.84
39706819--39706856	20	1.9	20	88	0	58	68	2	2	26	1.16
39706813--39706873	22	2.9	22	76	9	65	63	1	1	32	1.13
39708140--39708193	21	2.6	21	78	21	69	33	3	1	61	1.25
39711759--39711790	15	2.1	15	94	0	55	15	6	9	68	1.36
39730872--39730959	35	2.5	35	85	5	117	39	36	14	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39734587--39734612	13	2.0	13	100	0	52	38	7	23	30	1.83
39741595--39741650	22	2.6	22	82	2	69	35	16	32	16	1.90
39744574--39744688	23	4.9	23	83	3	140	45	4	28	21	1.71
39752130--39752233	23	4.4	23	78	7	111	45	4	27	22	1.72
39752130--39752233	24	4.4	24	78	2	113	45	4	27	22	1.72
39753637--39753693	29	2.0	29	96	0	105	31	14	19	35	1.91
39763520--39763693	91	1.9	89	88	2	258	28	22	13	34	1.93
39769221--39769378	25	6.4	25	70	9	101	35	19	24	20	1.96
39769284--39769497	25	8.7	24	67	16	82	35	21	24	18	1.96
39770481--39770509	5	5.8	5	100	0	58	20	0	0	79	0.74
39771952--39771982	6	5.2	6	100	0	62	16	35	0	48	1.46
39777023--39777141	25	4.8	25	75	7	109	33	22	25	18	1.97
39777097--39777215	48	2.5	47	78	5	130	33	23	25	17	1.96
39777147--39777267	26	4.8	26	72	12	92	34	23	23	18	1.96
39785269--39785333	27	2.4	28	97	2	123	40	10	0	49	1.38
39785386--39785437	27	1.9	27	84	0	68	28	23	30	17	1.97
39785478--39785594	4	29.0	4	71	22	61	68	0	29	1	1.00
39785468--39785524	27	2.1	28	90	9	91	59	0	36	3	1.14
39785468--39785594	28	4.7	26	72	16	89	66	0	31	2	1.05
39785481--39785612	22	6.4	21	70	21	84	67	0	31	1	1.00
39785504--39785612	43	2.8	36	75	21	121	68	0	30	0	0.96
39785506--39785608	10	10.4	10	70	21	58	68	0	30	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39785508--39785612	38	2.6	41	79	10	128	68	0	30	0	0.96
39789728--39789753	3	8.7	3	100	0	52	69	30	0	0	0.89
39789752--39789780	3	9.7	3	100	0	58	68	0	0	31	0.89
39793468--39793557	44	2.0	44	100	0	180	38	15	8	36	1.79
39796085--39796132	23	2.0	26	88	12	75	77	4	12	6	1.11
39801139--39801163	4	6.2	4	100	0	50	76	0	0	24	0.80
39803183--39803213	16	1.9	16	93	0	53	35	35	0	29	1.58
39803793--39803842	21	2.4	21	100	0	100	22	42	16	20	1.89
39804795--39804877	41	2.0	41	100	0	166	27	28	16	26	1.97
39805115--39805170	21	2.7	21	94	2	96	33	26	0	39	1.57
39805285--39805324	20	2.0	20	90	0	62	27	10	12	50	1.72
39805270--39805336	34	1.9	35	90	3	109	31	8	13	46	1.74
39805264--39805340	14	5.0	15	71	20	52	33	9	14	42	1.77
39806671--39806695	12	2.1	12	100	0	50	32	16	0	52	1.44
39807137--39807182	21	2.4	21	86	13	64	34	8	2	54	1.43
39811684--39811958	138	2.0	139	89	2	419	35	15	21	27	1.93
39813129--39813237	55	2.0	55	98	0	209	24	17	18	39	1.92
39815007--39815053	20	2.3	20	96	0	85	27	8	8	55	1.59
39819952--39820042	45	2.0	45	97	0	173	15	18	6	59	1.57
39831676--39831716	18	2.2	19	86	4	57	70	0	0	29	0.87
39832130--39832160	9	3.4	9	95	0	53	45	16	9	29	1.79
39834745--39834778	16	2.1	17	88	5	52	44	2	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39860158--39860190	17	1.9	17	88	11	50	42	6	0	51	1.26
39866412--39866443	15	2.0	17	88	11	50	53	6	0	40	1.26
39870568--39870620	2	26.5	2	96	0	88	3	50	0	45	1.19
39872154--39872255	20	5.2	20	72	9	75	48	15	4	31	1.67
39872154--39872252	19	5.0	21	77	13	93	49	16	5	29	1.66
39872154--39872255	39	2.6	39	82	3	125	48	15	4	31	1.67
39874419--39874493	25	3.4	21	73	22	73	57	5	0	37	1.22
39874420--39874470	20	2.6	20	84	9	61	58	5	0	35	1.22
39885821--39885891	25	2.9	23	74	14	61	18	29	22	29	1.97
39887034--39887208	73	2.4	73	98	0	332	21	26	25	26	2.00
39890258--39890290	14	2.3	15	90	10	52	0	42	0	57	0.98
39893183--39893273	45	2.0	45	97	0	173	32	4	23	39	1.74
39905329--39905371	21	2.0	21	95	0	77	20	32	4	41	1.73
39913109--39913134	12	2.2	12	100	0	52	69	0	15	15	1.20
39913744--39913812	30	2.3	30	89	0	102	40	14	18	26	1.89
39919862--39919924	26	2.4	26	81	0	72	41	11	14	33	1.81
39933689--39933749	29	2.1	30	84	3	79	36	16	8	39	1.78
39934200--39934231	14	2.3	14	94	0	55	84	0	12	3	0.74
39954065--39954101	19	1.9	19	94	0	65	48	2	24	24	1.64
39956341--39956370	6	5.0	6	95	0	51	33	13	33	20	1.91
39985050--39985105	28	1.9	30	82	7	71	32	1	21	44	1.63
39985609--39985828	75	2.9	74	78	3	224	13	15	31	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39985604--39985836	38	6.2	38	81	1	247	14	15	31	39	1.87
39985770--39985864	38	2.5	38	85	0	136	16	23	27	32	1.96
39985867--39985963	41	2.4	41	80	0	104	15	15	28	40	1.88
39993234--39993356	41	3.0	41	81	7	117	21	22	21	34	1.97
39999144--39999238	41	2.3	41	85	0	127	21	22	23	33	1.97
39999165--39999264	41	2.5	40	84	6	125	21	18	25	36	1.95
40004101--40004158	22	2.7	22	83	2	73	24	25	37	12	1.90
40006187--40006222	12	2.9	12	91	4	54	16	27	0	55	1.42
40006187--40006222	18	1.9	19	88	5	56	16	27	0	55	1.42
40008298--40008343	20	2.2	21	85	11	60	19	2	4	73	1.10
40008628--40008718	29	3.3	29	66	27	79	28	9	9	51	1.67
40008610--40008716	54	2.0	54	98	0	205	28	8	13	50	1.70
40015098--40015150	25	2.1	25	100	0	106	49	15	3	32	1.62
40022730--40022764	15	2.3	15	100	0	70	42	25	0	31	1.55
40029962--40029995	5	6.8	5	87	12	52	2	14	0	82	0.79
40036863--40036895	15	2.1	16	88	5	50	81	0	18	0	0.68
40036891--40036994	40	2.6	40	79	10	97	73	7	12	6	1.25
40036938--40036971	13	2.8	12	86	8	50	79	5	2	11	1.02
40036943--40036971	13	2.2	13	100	0	58	79	6	0	13	0.93
40037869--40037922	6	8.0	7	76	15	51	70	1	16	11	1.25
40039214--40039467	44	5.5	44	72	14	172	33	20	18	28	1.96
40039605--40040389	50	15.7	50	70	5	492	33	23	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40039597--40040422	100	8.2	100	80	7	908	33	23	19	23	1.97
40039604--40040422	301	2.7	301	89	2	1238	33	23	19	23	1.97
40063219--40063256	16	2.5	15	87	12	51	39	0	2	57	1.12
40063267--40063501	61	3.9	61	68	7	185	39	2	14	42	1.61
40063223--40063463	118	2.0	119	99	0	475	40	2	13	43	1.57
40066080--40066133	15	3.1	18	76	20	60	29	1	0	68	1.00
40066324--40066368	21	2.2	20	84	11	56	40	4	4	51	1.42
40075659--40075710	21	2.4	21	83	3	59	50	11	25	13	1.75
40075659--40075700	22	1.9	22	85	9	59	52	9	23	14	1.71
40075926--40075967	21	2.0	21	86	4	59	64	2	26	7	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136