genome.fa.s10.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  98  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32820095--32820260	88	1.9	88	81	7	203	24	23	24	27	2.00
32819838--32820377	220	2.5	219	92	1	893	25	25	20	28	1.99
32821330--32821366	7	5.4	7	84	15	51	0	13	0	86	0.57
32821330--32821365	10	3.5	10	85	7	54	0	13	0	86	0.58
32826737--32826785	20	2.3	21	80	16	57	57	2	6	34	1.35
32826677--32827006	161	2.1	161	99	0	653	46	3	11	38	1.58
32826898--32826946	20	2.3	21	80	16	57	57	2	6	34	1.35
32826974--32827051	33	2.4	33	77	0	93	48	3	10	37	1.55
32833040--32833131	37	2.5	37	82	8	116	32	22	1	43	1.61
32833040--32833132	36	2.5	35	81	13	107	32	23	1	43	1.61
32833406--32833441	18	2.1	18	89	5	56	33	25	0	41	1.55
32842946--32842995	25	2.0	25	84	0	64	42	6	8	44	1.58
32851282--32851390	24	4.4	25	83	6	98	31	22	26	20	1.98
32851303--32851474	49	3.4	49	75	10	143	34	21	24	19	1.96
32851276--32851474	25	8.0	25	75	11	124	33	21	24	20	1.97
32851538--32851620	24	3.4	24	79	1	76	32	20	27	19	1.97
32853717--32853788	36	2.0	36	83	2	92	27	27	11	33	1.91
32859684--32859725	20	2.2	20	82	4	50	54	7	9	28	1.59
32869549--32870862	201	6.7	199	77	7	1114	30	21	18	30	1.97
32871256--32871506	99	2.5	99	88	1	351	24	29	18	27	1.98
32871468--32871588	33	3.7	33	76	12	115	23	28	23	24	1.99
32871461--32871588	66	1.9	66	84	3	168	24	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32871256--32871550	99	3.0	99	81	4	238	24	28	20	27	1.99
32878166--32878205	17	2.4	17	87	8	55	35	2	2	60	1.24
32883996--32884037	17	2.5	17	88	3	68	52	0	7	40	1.29
32884154--32884197	17	2.6	17	79	10	54	45	6	4	43	1.51
32893490--32893563	29	2.5	29	82	4	85	45	13	13	27	1.81
32895033--32895161	66	2.0	66	95	0	231	27	36	16	19	1.93
32897834--32897887	21	2.6	21	87	0	81	27	3	35	33	1.75
32900557--32900593	2	18.5	2	100	0	74	51	48	0	0	1.00
32902362--32902399	6	6.2	6	87	6	58	39	0	60	0	0.97
32902362--32902397	18	2.0	18	100	0	72	38	0	61	0	0.96
32902367--32902408	18	2.3	18	87	0	57	40	0	59	0	0.97
32910718--32910772	23	2.3	24	78	9	67	38	16	9	36	1.80
32918470--32918776	153	2.0	155	92	2	519	42	4	4	48	1.45
32918736--32918770	18	2.0	17	88	5	52	54	0	0	45	0.99
32926785--32926997	67	3.1	67	62	24	163	44	8	7	39	1.64
32926760--32927033	138	2.0	138	99	0	539	45	7	8	39	1.62
32934960--32935096	25	5.5	25	68	17	70	35	21	24	18	1.95
32937649--32937747	41	2.4	41	91	1	155	24	25	11	39	1.88
32940551--32940658	45	2.3	47	85	4	139	47	4	8	39	1.54
32941087--32941123	19	1.9	19	89	10	58	72	2	0	24	0.97
32952174--32952215	21	2.0	20	90	4	66	33	0	4	61	1.17
32952181--32952223	20	2.1	21	86	4	61	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32952219--32952255	19	2.0	19	89	5	58	35	2	10	51	1.51
32952226--32952261	18	1.9	19	88	5	56	36	2	11	50	1.53
32952252--32952292	20	2.0	20	90	0	64	39	0	4	56	1.21
32953009--32953067	22	2.7	23	84	5	68	35	3	18	42	1.67
32956644--32956704	22	2.7	23	80	5	63	34	3	19	42	1.68
32958555--32958697	71	2.0	72	98	1	279	41	6	6	44	1.58
32974371--32974401	11	2.8	11	90	0	53	32	0	0	67	0.91
32974517--32974585	30	2.3	30	92	2	102	55	17	5	21	1.63
32976184--32976307	66	1.9	62	87	6	176	36	4	11	47	1.61
32977849--32977882	13	2.4	14	90	9	52	38	2	2	55	1.30
32979858--32979888	6	5.2	6	100	0	62	51	0	48	0	1.00
32980936--32981015	30	2.6	31	86	9	112	25	13	26	35	1.93
32982961--32983070	56	2.0	56	96	0	202	41	11	18	28	1.85
32994744--32994773	3	10.0	3	100	0	60	33	0	0	66	0.92
32995353--32995402	26	2.0	24	84	7	64	40	2	6	52	1.38
32998880--32998916	14	2.6	14	86	4	56	48	24	0	27	1.51
32999835--32999892	24	2.4	23	81	13	64	17	6	3	72	1.21
33003753--33003816	23	2.6	24	78	9	67	18	21	20	39	1.93
33010841--33010902	30	2.1	30	90	0	97	59	12	3	24	1.48
33012629--33012669	17	2.4	17	88	12	57	24	4	0	70	1.06
33013307--33013384	32	2.5	31	79	4	93	32	15	16	35	1.90
33016799--33016861	17	3.5	17	80	6	63	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33016847--33016897	20	2.5	20	79	17	61	60	9	0	29	1.28
33017119--33017148	13	2.2	13	94	5	51	33	0	0	66	0.92
33017559--33017835	91	3.0	91	83	4	319	31	11	15	41	1.83
33024070--33024098	12	2.3	13	94	5	51	41	0	13	44	1.44
33025113--33025179	20	3.5	20	71	22	70	25	16	25	32	1.96
33026665--33026838	86	2.0	87	98	1	341	43	12	11	32	1.78
33026954--33026994	22	1.9	22	85	5	57	43	4	21	29	1.73
33028338--33028398	29	2.1	28	81	3	68	44	18	11	26	1.83
33035377--33035408	9	3.6	9	95	0	55	0	3	9	87	0.64
33037397--33037614	107	2.0	108	99	0	429	48	8	6	37	1.59
33044517--33044550	15	2.3	15	100	0	68	47	14	11	26	1.79
33051459--33051491	14	2.4	14	94	0	57	75	0	24	0	0.80
33051451--33051492	20	2.2	19	91	4	66	78	0	21	0	0.75
33054916--33054955	17	2.4	17	83	4	55	45	0	15	40	1.46
33056140--33056174	3	11.7	3	100	0	70	0	34	0	65	0.93
33056854--33056957	42	2.6	39	78	13	111	30	16	14	38	1.88
33056854--33057079	43	5.4	42	76	7	131	32	17	15	33	1.92
33059872--33059901	6	5.0	6	95	0	51	16	0	3	80	0.85
33059872--33059910	18	2.2	18	85	0	51	17	2	2	76	1.01
33066362--33066528	83	2.0	84	98	1	327	45	9	4	40	1.58
33076308--33076430	10	12.3	10	68	16	51	56	0	4	38	1.27
33077706--33077752	13	3.6	13	100	0	94	25	31	29	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33078695--33078791	50	1.9	49	82	12	117	32	22	22	21	1.98
33078695--33078791	25	3.9	25	78	14	85	32	22	22	21	1.98
33079959--33079994	15	2.5	14	91	8	63	44	11	0	44	1.39
33080208--33080240	11	3.1	11	86	4	50	60	12	0	27	1.32
33084374--33084462	42	2.1	42	87	2	126	19	8	42	29	1.81
33088621--33088647	14	1.9	14	100	0	54	37	0	11	51	1.37
33101002--33101046	19	2.3	20	85	7	58	51	11	8	28	1.68
33102685--33102714	14	2.1	14	93	0	51	43	6	20	30	1.77
33104177--33104205	12	2.4	12	100	0	58	20	37	34	6	1.80
33110102--33110140	15	2.5	16	87	4	53	7	15	0	76	0.99
33116466--33116494	13	2.1	14	93	6	51	20	24	20	34	1.97
33119280--33119307	7	4.0	7	100	0	56	14	0	14	71	1.15
33126559--33126594	17	2.1	17	89	5	54	19	2	11	66	1.35
33127159--33127217	27	2.2	27	100	0	118	35	10	15	38	1.81
33130630--33130768	58	2.4	58	78	2	154	41	2	3	53	1.30
33130863--33130950	45	2.0	46	82	14	114	37	20	5	36	1.76
33130932--33130985	16	3.4	16	85	10	74	29	24	5	40	1.77
33139723--33139752	12	2.5	12	100	0	60	66	0	10	23	1.21
33143262--33143314	10	5.4	10	77	4	63	66	1	1	30	1.13
33143263--33143325	29	2.2	29	85	5	83	63	3	3	30	1.25
33143648--33143677	12	2.5	12	100	0	60	66	0	10	23	1.21
33144560--33144596	15	2.4	16	86	8	51	45	8	2	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33147124--33147161	20	1.9	20	88	0	58	52	0	15	31	1.43
33147820--33147853	18	1.9	18	88	5	52	35	5	8	50	1.58
33151909--33151956	15	3.1	15	79	5	51	39	0	12	47	1.41
33154193--33154256	25	2.4	27	87	10	89	43	10	0	45	1.39
33154307--33154406	27	3.7	27	84	0	110	28	27	27	18	1.98
33154491--33154529	11	3.6	11	86	6	62	71	0	28	0	0.86
33154490--33154528	21	1.9	20	94	5	69	69	0	30	0	0.89
33154528--33154579	26	2.0	26	100	0	104	42	0	7	50	1.31
33154682--33155214	3	177.7	3	99	0	1057	0	0	33	66	0.93
33162006--33162144	4	34.0	4	71	18	65	0	31	1	66	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136