genome.fa.s10.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  52  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17234412--17234449	19	2.0	19	100	0	76	36	26	10	26	1.89
17235658--17235717	28	2.1	28	93	0	102	28	10	20	41	1.84
17236014--17236120	45	2.3	46	78	10	114	28	23	15	32	1.95
17240485--17240689	84	2.5	82	85	4	259	53	4	20	21	1.64
17241079--17241125	9	5.2	9	84	0	58	31	10	10	46	1.73
17241079--17241125	18	2.6	18	93	0	85	31	10	10	46	1.73
17251141--17251707	44	12.5	44	71	11	315	34	17	19	28	1.95
17251136--17251346	89	2.4	89	84	5	250	36	17	17	29	1.93
17251142--17251481	133	2.5	133	79	9	364	35	17	18	28	1.93
17251141--17251684	139	3.9	138	72	13	406	34	17	19	28	1.94
17251543--17251726	44	4.2	44	85	2	244	33	19	19	28	1.95
17252366--17252397	2	16.0	2	93	0	55	46	0	3	50	1.17
17253332--17253381	3	16.0	3	87	4	64	30	4	0	66	1.10
17253333--17253393	17	3.5	17	82	10	70	31	3	1	63	1.20
17254290--17254327	9	4.1	9	89	3	58	28	13	13	44	1.81
17257537--17257579	22	2.0	22	95	0	77	9	16	27	46	1.77
17257632--17257851	43	5.1	43	89	1	334	30	33	17	18	1.94
17257630--17257851	85	2.6	85	89	1	336	30	33	17	18	1.94
17257632--17257868	128	1.9	127	88	2	359	30	32	17	19	1.95
17258956--17258983	5	5.6	5	100	0	56	17	0	0	82	0.68
17263080--17263228	75	1.9	78	86	6	216	31	8	14	44	1.76
17264025--17264119	14	6.8	14	78	7	95	32	42	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17263883--17264045	82	2.0	81	86	1	227	45	29	0	24	1.58
17264025--17264119	28	3.4	28	78	5	111	32	42	0	25	1.55
17264025--17264108	7	12.0	7	73	5	71	29	45	0	25	1.54
17264622--17264945	41	7.9	41	90	2	452	28	25	22	23	1.99
17264977--17265089	39	2.8	39	80	10	113	21	23	21	34	1.97
17264998--17265089	39	2.3	40	85	7	116	23	26	19	30	1.98
17269378--17269416	17	2.3	17	86	8	53	66	2	0	30	1.05
17269367--17269412	23	2.0	22	83	8	56	67	6	0	26	1.15
17276859--17276926	36	1.9	34	91	5	109	13	0	36	50	1.42
17277131--17277544	126	3.3	126	92	0	677	32	19	21	26	1.97
17280581--17280606	13	2.0	13	100	0	52	38	7	7	46	1.61
17281893--17281925	7	4.7	7	92	0	57	57	18	0	24	1.40
17283143--17283190	22	2.2	23	82	17	66	43	0	31	25	1.55
17283147--17283192	11	4.3	10	81	13	56	45	0	28	26	1.54
17289082--17289130	24	2.0	24	84	11	64	30	0	2	67	1.02
17290260--17290331	31	2.3	31	80	2	90	25	6	13	54	1.64
17293252--17293360	56	1.9	57	81	5	132	24	13	5	55	1.59
17293255--17293365	28	3.9	28	78	9	109	23	15	5	55	1.60
17293643--17293716	34	2.2	34	85	4	96	31	9	16	43	1.79
17293654--17293724	34	2.1	34	91	0	115	29	8	16	45	1.77
17299896--17299950	26	2.1	26	96	0	101	16	9	30	43	1.79
17300375--17300447	38	1.9	38	100	0	146	27	15	10	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17307365--17307399	18	1.9	18	94	0	61	62	5	8	22	1.45
17309611--17309660	17	2.8	18	85	8	59	34	4	4	58	1.36
17316423--17316452	8	3.9	8	91	8	53	90	10	0	0	0.47
17316431--17316493	17	3.6	17	80	6	63	80	3	12	3	0.94
17317005--17317044	8	5.0	8	90	0	62	70	0	17	12	1.18
17316994--17317044	16	3.2	16	91	5	77	68	0	19	11	1.20
17318376--17319403	50	20.6	50	77	2	765	26	25	27	19	1.99
17318319--17319403	100	10.9	100	90	0	1217	27	25	27	19	1.99
17320714--17320764	20	2.5	21	84	9	70	33	3	5	56	1.42
17320729--17320767	18	2.2	17	86	4	51	35	2	2	58	1.25
17321996--17322027	7	4.4	7	92	7	55	87	0	12	0	0.54
17321996--17322027	15	2.2	15	94	5	57	87	0	12	0	0.54
17327852--17328032	50	3.6	50	79	5	163	20	27	22	28	1.99
17336405--17336473	30	2.3	30	82	2	77	21	15	17	44	1.86
17336652--17336723	22	3.3	22	92	3	119	27	34	0	37	1.57
17336652--17336707	11	5.1	11	71	16	53	23	35	0	41	1.55
17336759--17336819	28	2.1	29	96	3	115	37	0	0	62	0.96
17336912--17336941	14	2.1	15	93	6	53	26	0	6	66	1.16
17338791--17338825	18	1.9	18	88	0	52	25	34	8	31	1.86
17339310--17339864	29	19.2	29	81	11	536	43	28	1	27	1.63
17339412--17339453	7	6.1	7	91	5	68	30	54	0	14	1.40
17339729--17339768	21	2.0	21	90	5	64	47	30	0	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17341409--17341561	76	2.0	76	97	0	288	20	25	24	29	1.99
17343159--17343425	125	2.1	124	92	2	437	33	19	16	30	1.94
17346864--17346916	18	3.0	17	91	5	79	39	1	1	56	1.21
17349975--17350197	111	2.0	113	88	4	335	30	13	11	45	1.77
17350710--17350853	73	2.0	73	88	0	216	36	18	18	27	1.94
17351254--17351308	20	2.7	21	77	2	58	56	0	5	38	1.23
17351607--17351656	3	16.7	3	83	8	66	62	4	2	32	1.25
17353023--17354587	100	15.6	100	87	0	2081	25	20	21	32	1.98
17354503--17354842	100	3.4	100	86	2	452	25	22	20	30	1.98
17355715--17355765	12	4.5	11	81	16	52	1	17	1	78	0.94
17355715--17355765	17	3.0	17	85	5	59	1	17	1	78	0.94
17356201--17356231	14	2.1	15	94	5	55	0	3	12	83	0.75
17358755--17358892	74	1.9	74	93	0	240	31	19	19	28	1.96
17359270--17359300	16	1.9	16	100	0	62	38	0	9	51	1.35
17359267--17359301	10	3.5	10	88	0	52	42	0	8	48	1.33
17361287--17361327	17	2.3	18	91	8	66	53	2	9	34	1.47
17362266--17362294	6	4.8	6	100	0	58	68	0	0	31	0.89
17362303--17362335	16	2.0	17	94	5	59	51	0	0	48	1.00
17362494--17362520	3	9.0	3	100	0	54	33	0	0	66	0.92
17364120--17364151	15	2.0	17	88	11	50	62	9	0	28	1.26
17364311--17364350	19	2.0	20	85	4	55	47	2	12	37	1.55
17366239--17366400	46	3.6	46	77	9	197	29	19	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17366191--17366566	90	4.3	90	78	6	446	29	21	19	30	1.97
17366184--17366828	44	14.8	44	68	13	298	30	21	18	30	1.97
17366280--17366698	174	2.4	175	95	0	732	30	21	18	29	1.97
17366561--17366827	129	2.1	129	92	0	444	31	21	17	29	1.96
17374658--17375096	66	6.8	66	87	7	661	29	33	18	17	1.95
17383205--17383252	19	2.6	18	81	15	53	45	8	20	25	1.79
17384346--17384387	14	2.9	14	85	3	57	78	2	2	16	0.96
17385286--17385320	13	2.7	13	90	0	52	42	11	0	45	1.40
17388119--17388157	15	2.8	14	88	7	53	25	7	2	64	1.33
17388130--17388158	15	1.9	15	100	0	58	27	10	0	62	1.28
17389939--17389973	13	2.7	13	90	0	52	42	11	0	45	1.40
17400603--17400689	10	8.8	9	72	16	57	22	26	12	37	1.90
17400623--17400689	20	3.3	20	81	6	73	23	25	13	37	1.92
17403230--17403293	20	3.2	20	84	4	67	32	14	28	25	1.94
17405380--17405461	30	2.9	28	81	13	82	14	17	2	65	1.37
17405445--17405483	14	2.9	13	82	17	53	7	17	5	69	1.32
17407883--17407940	20	2.9	20	87	5	73	31	15	29	24	1.95
17413678--17413774	19	5.2	19	78	2	97	39	16	12	31	1.86
17413678--17413774	37	2.6	38	75	3	106	39	16	12	31	1.86
17413898--17413939	22	1.9	22	90	0	66	26	16	16	40	1.90
17418773--17418829	28	2.0	28	100	0	114	63	7	0	29	1.21
17418780--17418826	14	3.4	14	71	11	51	68	6	0	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17419050--17419088	12	3.2	12	86	10	53	58	5	0	35	1.20
17421216--17421252	17	2.2	17	95	0	65	16	2	2	78	0.98
17421833--17421872	19	2.1	19	85	0	53	30	2	2	65	1.19
17422103--17422153	2	25.5	2	83	0	57	41	3	5	49	1.45
17422472--17422509	13	2.8	14	80	19	53	21	5	7	65	1.38
17422520--17422550	15	2.1	15	93	0	53	16	0	16	67	1.23
17426395--17426444	20	2.6	19	84	9	66	66	0	10	24	1.22
17426766--17426792	14	1.9	14	100	0	54	7	0	33	59	1.25
17431123--17431176	20	2.7	20	79	2	63	37	5	9	48	1.59
17435407--17435441	3	11.7	3	100	0	70	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136