genome.fa.s10.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  24  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7453028--7453070	16	2.7	16	85	0	59	48	0	4	46	1.22
7453027--7453071	14	3.1	14	81	9	54	51	0	4	44	1.21
7462753--7462860	46	2.4	44	87	6	146	28	5	27	37	1.79
7465837--7465886	3	17.3	3	77	8	50	30	2	4	64	1.23
7468004--7468379	51	7.5	51	87	4	489	32	15	22	29	1.94
7470694--7470727	14	2.3	15	95	5	61	61	32	0	5	1.20
7471876--7471980	3	34.7	3	73	16	74	27	4	4	62	1.35
7472207--7472255	15	3.5	15	75	13	50	22	2	14	61	1.43
7491945--7494833	637	4.6	617	86	5	3688	33	14	16	35	1.90
7496311--7496600	151	1.9	151	85	1	402	28	28	15	26	1.96
7500983--7501045	27	2.3	27	91	0	108	12	28	33	25	1.92
7501814--7501842	15	1.9	15	100	0	58	65	0	13	20	1.26
7502571--7502615	20	2.2	21	84	11	58	17	2	6	73	1.15
7509149--7509212	23	2.6	24	83	11	69	40	1	9	48	1.45
7509232--7509290	29	2.0	30	86	3	84	54	10	1	33	1.44
7515790--7515833	23	1.9	22	82	17	54	36	25	0	38	1.56
7515879--7515966	45	2.0	45	95	0	158	32	22	18	26	1.97
7515973--7516106	51	2.6	51	80	6	148	32	27	14	24	1.95
7518346--7518403	17	3.4	18	75	13	52	67	1	0	31	1.01
7525949--7525984	18	1.9	19	94	5	65	72	11	2	13	1.23
7529663--7529704	20	2.0	20	86	13	59	71	0	2	26	0.98
7532263--7532291	14	2.1	14	93	6	51	89	3	6	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7539835--7540086	94	2.7	94	100	0	504	44	5	7	43	1.55
7545915--7545952	1	38.0	1	100	0	76	0	0	0	100	0.00
7548616--7548646	6	5.2	6	100	0	62	16	16	67	0	1.23
7557119--7557153	10	3.6	10	84	7	54	51	0	0	48	1.00
7579020--7579064	19	2.3	20	85	14	60	55	8	0	35	1.31
7579020--7579069	18	2.7	18	82	17	59	54	8	0	38	1.30
7585597--7585667	14	5.2	13	77	11	54	59	23	0	16	1.38
7586603--7586842	119	2.0	120	99	0	473	42	17	10	28	1.83
7598093--7598127	3	11.7	3	100	0	70	65	0	0	34	0.93
7603092--7603141	26	1.9	26	87	0	73	54	2	0	44	1.11
7603191--7603256	28	2.4	27	82	12	80	22	6	4	66	1.32
7604190--7604219	4	7.5	4	100	0	60	26	0	23	50	1.50
7607124--7607152	14	2.0	15	93	6	51	68	6	17	6	1.34
7610709--7610740	17	1.9	16	93	6	55	46	3	6	43	1.44
7619229--7619271	22	2.0	22	81	9	52	27	4	6	60	1.43
7620026--7620063	19	2.1	19	90	5	60	68	0	0	31	0.90
7620128--7620168	20	2.1	19	86	4	55	63	2	0	34	1.08
7620424--7620474	20	2.5	21	87	9	79	37	1	0	60	1.08
7620424--7620474	19	2.5	20	87	6	68	37	1	0	60	1.08
7621226--7621624	114	3.5	114	89	5	519	24	25	24	25	2.00
7652446--7652478	4	8.2	4	100	0	66	0	75	0	24	0.80
7658476--7658849	188	2.0	188	98	1	732	39	6	10	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7659699--7659855	85	1.9	84	81	6	192	47	9	10	33	1.70
7661871--7661901	16	1.9	16	93	0	53	41	16	19	22	1.89
7681433--7681468	7	5.4	7	93	6	58	8	16	0	75	1.04
7682849--7683033	87	2.1	88	85	4	248	41	17	7	32	1.78
7682850--7683094	86	2.8	85	82	10	266	38	17	9	35	1.82
7683199--7683257	20	3.0	20	75	12	59	64	1	0	33	1.04
7683307--7683345	19	2.1	19	85	9	53	64	5	2	28	1.28
7685950--7685978	2	14.5	2	100	0	58	51	0	48	0	1.00
7689501--7689567	35	1.9	35	93	0	116	16	17	0	65	1.27
7695395--7695477	39	2.1	39	86	0	112	22	38	16	21	1.93
7708811--7708909	27	3.7	27	80	4	110	24	28	24	23	2.00
7740687--7740721	11	3.1	12	92	8	56	8	5	5	80	1.03
7742711--7742771	11	5.9	11	69	21	51	59	0	1	39	1.08
7743664--7743698	18	2.0	17	88	5	52	65	0	2	31	1.07
7743652--7743758	26	4.0	26	77	8	81	62	0	2	33	1.16
7743684--7743760	27	2.9	28	78	9	81	64	1	2	31	1.15
7744393--7744422	11	2.6	12	94	5	53	63	0	0	36	0.95
7744957--7745050	18	5.2	18	71	16	70	34	5	1	59	1.27
7744986--7745024	16	2.4	16	86	4	51	33	0	2	64	1.08
7745029--7745074	20	2.2	21	80	3	58	30	8	2	58	1.40
7751289--7751318	15	2.0	15	93	0	51	16	6	0	76	0.99
7751424--7751452	15	1.9	15	100	0	58	34	10	6	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7754840--7754884	22	2.0	23	82	4	56	42	8	2	46	1.47
7759716--7759756	3	13.7	3	100	0	82	65	0	0	34	0.93
7761427--7761457	12	2.6	12	94	0	53	0	9	19	70	1.14
7761990--7762128	31	4.4	32	90	2	219	47	12	9	30	1.72
7761989--7762128	63	2.2	63	97	0	262	47	12	9	30	1.73
7762784--7762826	18	2.5	17	82	14	52	48	6	4	39	1.51
7775290--7775322	15	2.2	15	94	0	57	36	3	0	60	1.12
7780817--7780872	27	2.1	27	100	0	112	41	19	14	25	1.89
7782468--7782568	49	2.1	49	96	0	184	44	15	15	23	1.85
7783890--7784052	79	2.1	80	96	2	303	52	11	7	28	1.64
7783967--7784007	21	2.0	21	85	0	55	56	9	4	29	1.53
7793541--7793566	2	13.0	2	100	0	52	0	50	0	50	1.00
7802111--7802135	3	8.3	3	100	0	50	0	32	0	68	0.90
7813647--7813677	1	31.0	1	93	0	53	0	0	96	3	0.21
7816841--7816921	27	2.9	28	78	15	78	38	3	2	55	1.31
7820549--7820667	6	19.8	6	84	3	123	31	15	47	6	1.71
7821493--7821629	10	14.4	9	70	15	73	64	0	3	31	1.10
7821493--7821563	19	3.8	19	82	10	76	64	0	2	32	1.08
7821507--7821576	29	2.4	31	81	13	85	64	0	4	31	1.13
7821537--7821597	18	3.4	18	75	18	56	68	0	4	26	1.09
7821612--7821652	20	2.0	20	85	0	55	63	2	7	26	1.33
7821912--7821965	19	2.9	19	83	2	65	37	5	0	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7821882--7821965	19	4.4	19	72	10	64	35	4	0	59	1.19
7821931--7821996	27	2.5	26	82	7	80	31	4	1	62	1.25
7824417--7824441	13	1.9	13	100	0	50	80	0	8	12	0.92
7831395--7831464	21	3.3	20	74	16	70	57	1	7	34	1.35
7831382--7831439	26	2.2	26	84	6	71	55	0	10	34	1.34
7832654--7832678	13	1.9	13	100	0	50	80	0	8	12	0.92
7838877--7838931	28	2.0	28	82	7	67	60	7	5	27	1.46
7841042--7841071	3	10.0	3	100	0	60	33	33	0	33	1.58
7841600--7841630	10	3.1	10	90	0	53	61	19	9	9	1.54
7842351--7842394	23	1.9	23	95	0	79	43	18	0	38	1.50
7847833--7847869	18	2.0	20	84	10	51	13	24	5	56	1.58
7850324--7850400	36	2.1	36	95	0	136	27	12	16	42	1.85
7850377--7850414	14	2.7	14	91	0	67	21	7	15	55	1.66
7850343--7850439	50	1.9	50	97	0	185	25	11	16	46	1.80
7853515--7853540	5	5.2	5	100	0	52	61	0	38	0	0.96
7856131--7856166	18	2.0	18	94	0	63	36	0	0	63	0.94
7858500--7858526	1	27.0	1	100	0	54	100	0	0	0	0.00
7870473--7870514	20	2.0	21	86	4	59	73	4	0	21	1.01
7891887--7891950	31	2.1	31	84	0	83	34	10	10	43	1.75
7894152--7894185	17	1.9	18	94	5	61	26	5	2	64	1.30
7894463--7894513	19	2.7	19	75	19	61	45	1	1	50	1.24
7906530--7906567	18	2.0	19	85	10	51	0	26	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7908504--7908532	4	7.5	4	92	7	51	0	27	0	72	0.85
7915525--7915563	20	1.9	20	84	5	51	38	20	0	41	1.53
7917982--7918039	25	2.3	26	75	21	61	51	3	0	44	1.18
7919143--7919181	6	6.5	6	100	0	78	51	0	33	15	1.44
7928725--7928796	36	2.0	36	97	0	135	41	15	22	20	1.89
7933852--7933896	23	2.0	21	83	8	54	55	2	8	33	1.43
7933852--7933901	21	2.3	21	82	6	55	56	4	8	32	1.47
7934710--7934747	19	2.0	19	89	0	58	52	5	5	36	1.47
7934722--7934803	29	2.7	30	86	3	112	52	4	3	39	1.41
7942842--7942868	3	9.0	3	100	0	54	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136