genome.fa.s10.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  28  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8868106--8868233	40	3.2	38	79	5	123	34	18	23	23	1.96
8868308--8868448	41	3.4	41	82	3	176	24	21	25	28	1.99
8868455--8868496	20	2.2	19	86	4	57	23	4	4	66	1.30
8871098--8871157	24	2.5	24	86	2	86	23	10	10	56	1.62
8873330--8873580	43	5.8	41	82	8	216	20	17	32	29	1.96
8873296--8873580	86	3.3	85	85	2	331	21	17	31	29	1.96
8874009--8874235	50	4.4	50	86	3	265	22	29	20	26	1.99
8880530--8880700	54	3.2	54	89	4	249	29	30	21	18	1.96
8910649--8910936	50	5.7	50	81	7	280	24	29	19	26	1.99
8913742--8913789	23	2.1	23	88	7	71	27	8	20	43	1.80
8914139--8914243	52	2.0	52	94	0	183	24	17	11	46	1.81
8925772--8925878	41	2.6	41	90	0	178	24	22	23	29	1.99
8927397--8927459	20	3.1	20	77	11	74	50	1	4	42	1.32
8927400--8927459	10	5.8	10	78	11	59	48	1	5	45	1.34
8931801--8932167	43	8.8	43	80	8	364	23	17	32	26	1.96
8932000--8932145	75	1.9	75	90	2	231	21	15	35	27	1.94
8931957--8932187	118	2.0	118	85	3	313	22	16	34	26	1.95
8933839--8934017	40	4.5	40	81	5	209	22	28	17	31	1.96
8938860--8938926	26	2.5	27	78	9	75	23	25	25	25	2.00
8943901--8944197	40	7.4	40	85	1	380	21	30	16	31	1.95
8944038--8944102	20	3.3	20	71	4	69	13	35	18	32	1.90
8946337--8946375	17	2.3	19	79	20	50	71	20	0	7	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8958601--8958645	19	2.4	18	82	7	54	20	28	24	26	1.99
8969777--8969817	21	2.0	20	85	4	55	26	4	4	63	1.35
8970143--8970184	19	2.3	19	83	4	50	66	4	0	28	1.12
8970566--8970604	21	1.9	21	89	5	62	35	0	0	64	0.94
8970570--8970643	34	2.1	36	82	9	91	25	2	1	70	1.09
8972165--8972202	18	2.1	18	90	0	58	71	0	0	28	0.87
8973774--8974312	106	5.1	106	92	0	875	32	18	18	31	1.95
8976382--8976720	44	7.8	44	70	13	168	27	22	20	30	1.98
8976382--8976785	129	3.1	129	83	4	501	26	22	20	30	1.98
8976690--8976870	97	1.9	97	89	2	283	27	20	20	30	1.98
8982134--8982191	3	19.3	3	79	13	66	63	0	3	32	1.11
8982127--8982191	12	5.2	12	71	22	53	63	0	3	33	1.10
8982127--8982200	24	3.0	25	77	11	80	63	1	4	31	1.21
8982726--8982767	21	2.0	21	86	9	59	73	7	14	4	1.21
8983471--8983880	44	9.7	42	70	12	252	26	23	21	27	1.99
8983469--8983880	127	3.2	127	98	0	788	26	23	21	27	1.99
8989362--8989423	25	2.5	25	84	7	74	64	3	14	17	1.41
8989381--8989435	25	2.2	25	90	0	83	63	9	10	16	1.51
8992601--8992677	38	2.0	38	94	0	136	31	23	14	31	1.94
8996553--8996594	21	2.0	21	86	9	59	73	7	14	4	1.21
9003955--9004386	106	4.1	106	92	0	654	33	18	16	31	1.94
9004675--9004708	4	8.5	4	87	12	52	70	0	2	26	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9015603--9015641	19	2.1	19	95	0	69	41	17	15	25	1.89
9021111--9021150	19	2.1	19	90	0	62	57	5	2	35	1.34
9023005--9023040	17	2.1	18	89	5	56	44	5	13	36	1.68
9025948--9026139	50	3.7	51	78	8	194	26	22	28	22	1.99
9025948--9026178	49	4.5	50	78	5	189	27	22	27	22	1.99
9026402--9026440	20	2.0	20	89	0	60	53	2	25	17	1.56
9027917--9028107	30	6.3	30	76	4	161	24	24	13	37	1.91
9027932--9028096	60	2.7	60	81	2	179	26	23	14	35	1.93
9030134--9030323	45	4.2	44	79	4	166	34	24	15	25	1.95
9030170--9030337	90	1.9	90	82	2	212	34	23	15	26	1.94
9038145--9038214	30	2.3	30	82	4	88	22	28	11	37	1.89
9038201--9038486	30	9.6	30	80	5	258	21	24	11	41	1.86
9038176--9038303	59	2.2	59	85	5	170	18	26	11	42	1.85
9038201--9038485	59	4.8	59	77	4	286	21	24	11	41	1.86
9038262--9038481	119	1.8	119	90	0	350	23	24	11	40	1.87
9038318--9038514	30	6.5	31	75	10	124	25	23	10	40	1.86
9039781--9041090	654	2.0	654	100	0	2620	35	13	18	33	1.89
9042853--9042904	26	2.0	26	96	0	95	25	15	9	50	1.74
9043675--9043706	15	2.1	15	94	0	55	15	6	9	68	1.36
9051321--9051362	22	1.9	22	90	9	68	57	2	4	35	1.33
9067979--9068038	23	2.6	23	83	0	66	53	5	11	30	1.58
9069952--9069993	15	2.9	15	82	3	50	42	9	11	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9070061--9070089	12	2.5	12	94	5	51	51	10	0	37	1.36
9070751--9070783	15	2.2	15	100	0	66	60	6	9	24	1.49
9070960--9071081	43	2.8	44	75	2	129	29	17	26	27	1.97
9073006--9073040	17	2.1	17	94	0	61	42	14	17	25	1.86
9080954--9080985	16	1.9	17	93	6	57	34	0	21	43	1.53
9084280--9084373	42	2.2	41	85	7	125	25	15	27	30	1.96
9085787--9085820	17	2.1	17	88	5	52	55	0	32	11	1.36
9098294--9098352	25	2.3	28	75	19	65	40	22	0	37	1.54
9098444--9098685	50	4.8	51	79	4	276	28	28	19	23	1.98
9098444--9098682	101	2.4	101	98	0	460	28	28	19	23	1.98
9098907--9098937	16	1.9	16	93	0	53	45	9	9	35	1.70
9101545--9101591	20	2.4	20	89	3	69	59	4	19	17	1.53
9105568--9105609	4	10.5	4	80	10	50	26	2	2	69	1.13
9105562--9105609	15	3.0	15	84	9	60	27	4	4	64	1.30
9105572--9105613	11	3.7	11	81	12	50	26	2	2	69	1.13
9106649--9106783	27	5.0	27	76	7	116	21	15	20	42	1.89
9106666--9106783	54	2.2	54	82	0	146	20	14	22	42	1.88
9106721--9106796	27	2.8	26	86	7	98	26	18	18	36	1.94
9106640--9106805	81	2.1	80	80	5	183	22	15	22	38	1.92
9108642--9108781	40	3.5	40	76	7	147	27	20	25	27	1.99
9114649--9114678	15	2.0	15	93	0	51	56	6	3	33	1.42
9117166--9117462	50	5.8	50	80	2	254	28	21	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9123745--9123777	16	2.1	16	100	0	66	57	18	0	24	1.40
9124518--9124552	3	11.7	3	100	0	70	68	0	0	31	0.90
9125627--9125699	3	24.3	3	97	0	137	0	1	32	65	1.01
9127054--9127139	34	2.5	34	94	0	145	34	32	11	20	1.89
9128063--9128108	17	2.9	16	78	15	51	47	17	0	34	1.48
9129715--9129775	21	2.9	21	83	7	79	18	6	39	36	1.76
9130206--9130256	25	2.0	25	100	0	102	33	23	19	23	1.97
9134969--9135034	36	1.9	34	82	11	82	33	4	3	59	1.33
9150177--9150269	40	2.3	42	83	9	122	34	2	2	61	1.20
9150206--9150277	33	2.3	29	84	11	90	31	2	1	63	1.17
9150177--9150269	41	2.3	39	82	12	107	34	2	2	61	1.20
9150942--9150968	13	2.1	13	100	0	54	48	37	0	14	1.45
9152814--9152978	82	2.0	82	85	2	224	35	21	9	33	1.85
9154720--9154756	9	4.1	9	92	0	65	29	10	13	45	1.77
9154808--9154838	9	3.4	9	90	0	53	38	22	12	25	1.90
9155247--9155284	17	2.2	17	100	0	76	34	47	0	18	1.49
9158749--9158802	5	10.8	5	78	13	58	77	1	18	1	0.95
9158749--9158802	25	2.2	25	86	6	74	77	1	18	1	0.95
9193109--9193144	18	2.0	18	94	0	63	63	11	8	16	1.49
9201674--9201778	41	2.6	41	89	0	147	19	30	16	34	1.93
9201674--9201790	41	2.9	41	86	0	126	18	29	16	35	1.93
9201716--9201802	41	2.1	41	84	0	111	22	26	14	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9220766--9220794	15	1.9	15	100	0	58	51	20	0	27	1.47
9226401--9226425	7	3.6	7	100	0	50	44	16	0	40	1.47
9226884--9226922	20	2.0	20	90	5	62	10	2	15	71	1.23
9230098--9230138	20	2.0	22	90	9	68	24	7	7	60	1.48
9230279--9230320	15	2.7	15	85	3	57	42	11	30	14	1.81
9231693--9231766	25	3.0	24	75	18	62	32	20	17	29	1.95
9244069--9244262	96	2.0	96	96	2	363	34	22	17	25	1.95
9252197--9252289	46	2.0	46	97	0	177	29	21	20	29	1.98
9259888--9259943	6	9.0	6	86	7	76	64	0	1	33	1.04
9268022--9268126	41	2.6	41	87	0	138	19	29	16	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136