genome.fa.s10.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  103  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34793080--34793130	13	3.9	13	81	0	66	33	7	23	35	1.84
34794799--34794855	17	3.2	17	68	18	53	38	15	22	22	1.92
34794799--34794868	36	1.9	36	97	0	131	40	12	25	21	1.89
34797739--34797798	29	2.1	29	100	0	120	43	21	6	28	1.78
34803153--34803183	13	2.3	14	94	5	55	38	0	0	61	0.96
34813386--34813423	3	12.7	3	100	0	76	0	31	0	68	0.90
34813560--34813586	3	9.0	3	100	0	54	0	33	0	66	0.92
34818517--34819231	355	2.0	356	99	0	1414	29	19	15	35	1.93
34824738--34824772	18	2.0	17	88	5	52	45	0	0	54	0.99
34824936--34825026	45	2.0	44	87	2	128	34	28	5	31	1.80
34825005--34825058	16	3.4	16	89	0	81	29	35	1	33	1.69
34838691--34838770	3	26.7	3	97	0	151	31	0	1	67	0.99
34841811--34841856	16	2.9	16	81	9	58	34	15	19	30	1.93
34846935--34847107	43	4.1	43	75	11	167	31	27	19	21	1.97
34846933--34847095	84	1.9	84	82	4	204	30	27	19	22	1.98
34849722--34849766	15	3.1	15	80	3	56	40	11	4	44	1.60
34853463--34853817	110	3.4	104	83	10	413	38	14	17	29	1.89
34857176--34857245	36	1.9	36	91	5	115	24	27	21	27	1.99
34868120--34868148	13	2.1	14	93	6	51	41	0	0	58	0.98
34868120--34868148	7	4.3	7	91	8	51	41	0	0	58	0.98
34868510--34868543	14	2.7	12	83	16	50	73	5	5	14	1.21
34868515--34868543	14	2.1	14	100	0	58	72	6	6	13	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34871032--34871072	14	2.8	15	81	7	57	63	0	2	34	1.08
34872134--34872163	4	7.5	4	100	0	60	76	0	0	23	0.78
34874991--34875029	15	2.7	15	80	4	53	51	0	0	48	1.00
34881067--34881145	33	2.4	33	91	0	131	29	26	17	26	1.98
34881383--34881419	18	2.1	18	100	0	74	5	45	10	37	1.62
34891770--34891868	30	3.2	31	77	8	87	42	6	14	37	1.70
34897135--34898483	269	5.0	269	100	0	2698	35	15	19	28	1.93
34905466--34905497	5	6.4	5	92	0	55	40	3	0	56	1.15
34914025--34914117	3	30.3	3	80	12	100	30	3	3	63	1.26
34917128--34917155	2	14.0	2	100	0	56	50	0	0	50	1.00
34917495--34917592	44	2.2	45	89	3	146	16	3	10	70	1.27
34917680--34918013	106	3.1	106	80	1	398	31	17	17	32	1.94
34924401--34924534	40	3.4	40	79	7	157	32	25	16	25	1.96
34924401--34924534	37	3.4	40	77	9	150	32	25	16	25	1.96
34925039--34925074	18	1.9	19	88	5	56	33	27	0	38	1.57
34925352--34925421	5	13.4	5	76	11	52	0	22	4	72	1.01
34925362--34925418	28	2.1	27	84	9	73	0	26	5	68	1.11
34925349--34925421	9	7.7	9	73	14	58	0	23	4	72	1.01
34925432--34925517	35	2.4	38	79	16	103	46	3	1	48	1.26
34931993--34932038	2	23.0	2	86	8	67	45	4	0	50	1.21
34933579--34933615	9	4.1	9	92	0	65	29	10	13	45	1.77
34933669--34933699	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34937695--34937913	38	5.8	38	100	0	438	15	7	23	52	1.68
34937682--34937739	29	2.0	30	93	3	100	13	6	22	56	1.61
34939224--34939257	16	2.1	16	88	0	50	50	2	2	44	1.32
34939517--34939560	3	14.7	3	100	0	88	31	0	0	68	0.90
34943247--34943290	20	2.2	20	83	0	52	50	0	0	50	1.00
34943146--34943439	108	2.7	108	99	0	579	46	3	3	46	1.36
34943355--34943398	20	2.2	20	83	0	52	50	0	0	50	1.00
34946913--34946956	11	3.8	12	80	19	58	25	29	0	45	1.54
34946909--34946953	22	1.9	25	86	13	69	22	33	0	44	1.53
34949046--34949093	21	2.3	21	82	7	62	31	37	29	2	1.69
34949303--34949449	21	6.9	21	75	6	143	46	29	1	21	1.60
34949303--34949471	44	4.0	42	85	6	218	47	30	1	20	1.57
34949361--34949506	22	6.9	21	71	10	109	51	30	0	17	1.50
34949558--34949641	21	4.1	19	70	20	55	52	25	1	21	1.54
34949594--34949693	22	4.5	22	81	2	94	54	27	1	18	1.50
34949594--34949708	22	5.3	23	75	9	80	53	26	0	19	1.50
34949651--34949766	59	1.9	61	91	6	193	50	28	0	20	1.55
34949712--34950225	22	24.0	22	73	8	339	48	29	0	21	1.53
34949669--34949754	37	2.3	37	82	4	102	51	30	1	17	1.53
34949790--34949960	21	8.0	21	80	9	76	50	29	0	18	1.51
34949712--34950254	235	2.3	234	86	4	772	48	29	0	21	1.53
34949941--34949972	15	2.1	16	94	5	57	53	31	0	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34950125--34950186	29	2.1	29	82	5	72	54	27	0	17	1.43
34950198--34950250	15	3.6	15	71	5	54	50	28	0	20	1.48
34950191--34950246	29	1.9	29	81	0	67	51	28	0	19	1.47
34950344--34951109	22	36.2	21	67	18	253	48	29	0	20	1.56
34950344--34950797	43	10.7	41	72	14	239	48	29	0	20	1.54
34950698--34950761	7	8.9	7	77	13	58	48	29	0	21	1.51
34950711--34950773	15	4.2	16	72	10	53	52	25	0	22	1.47
34950800--34950852	14	3.7	14	82	2	61	50	26	0	22	1.49
34950842--34950908	29	2.4	28	82	5	80	50	28	1	19	1.56
34951086--34951138	14	3.6	14	73	16	54	49	26	0	24	1.51
34951089--34951119	16	2.0	16	93	6	55	45	32	0	22	1.53
34954311--34954875	125	4.5	125	85	3	735	29	22	17	29	1.97
34954309--34954842	250	2.1	250	92	0	879	29	22	18	29	1.97
34958499--34958550	26	2.0	27	88	11	81	32	3	3	59	1.33
34958488--34958556	18	3.7	19	74	12	63	33	2	2	60	1.26
34961836--34961880	22	2.2	19	84	11	54	42	0	4	53	1.21
34964102--34964143	15	2.8	15	78	10	50	50	0	0	50	1.00
34964257--34964316	23	2.8	20	78	16	66	38	0	3	58	1.15
34965283--34965421	59	2.4	57	81	10	174	22	18	16	42	1.89
34965780--34965832	27	2.0	27	85	7	72	32	9	3	54	1.50
34965780--34965832	28	1.9	27	85	11	72	32	9	3	54	1.50
34967719--34967766	23	2.1	23	100	0	96	35	16	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34969892--34970076	93	2.0	94	97	2	354	43	10	9	36	1.73
34973050--34973086	12	2.9	14	84	15	53	67	0	0	32	0.91
34976353--34976587	116	2.0	117	98	0	454	49	5	7	36	1.56
34976357--34976632	116	2.4	116	90	5	389	50	5	6	37	1.51
34991932--34991965	4	8.5	4	86	0	50	70	0	5	23	1.09
34993476--34993948	44	10.8	44	76	9	333	29	20	16	33	1.94
34993619--34993948	131	2.6	124	78	6	313	29	20	16	34	1.94
34995717--34995747	16	1.9	16	93	0	53	41	6	32	19	1.77
35002781--35002827	3	15.7	3	100	0	94	65	0	0	34	0.93
35012207--35012312	33	3.2	33	91	0	158	16	38	26	18	1.91
35012754--35012783	11	2.7	11	94	0	51	10	26	3	60	1.45
35017302--35017339	18	2.2	17	86	9	51	21	7	2	68	1.28
35029619--35029682	24	2.7	24	90	0	92	35	1	0	62	1.05
35029638--35029690	24	2.2	24	89	3	79	35	1	0	62	1.06
35031287--35031322	17	2.1	17	94	0	63	50	0	8	41	1.33
35033680--35034141	229	2.0	230	99	0	908	43	10	8	38	1.68
35034538--35034950	125	3.3	125	91	0	612	33	18	18	30	1.94
35040416--35040452	11	3.2	12	85	11	51	48	0	24	27	1.51
35040432--35040456	11	2.3	11	100	0	50	48	0	36	16	1.46
35049175--35049225	17	2.9	17	82	5	66	25	1	1	70	1.08
35049146--35049225	36	2.2	38	88	4	119	28	3	2	65	1.23
35049173--35049226	28	2.0	28	85	3	74	27	1	1	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35060963--35061009	20	2.3	20	82	7	60	57	10	4	27	1.51
35060458--35061894	714	2.0	714	99	0	2849	38	10	10	40	1.74
35061677--35061723	20	2.3	20	82	7	60	57	10	4	27	1.51
35067176--35067226	21	2.4	21	96	0	93	9	29	5	54	1.56
35069503--35069567	23	2.8	23	81	11	62	70	0	13	15	1.16
35069534--35069617	6	13.5	6	76	16	73	73	3	19	3	1.12
35069587--35069630	16	2.6	17	86	13	65	75	0	25	0	0.81
35070258--35070387	6	21.5	6	71	16	63	70	3	23	3	1.16
35070269--35070396	18	7.4	17	71	16	86	70	3	25	1	1.11
35070300--35070377	29	2.7	28	79	11	77	70	2	26	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136