genome.fa.s10.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  109  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36886315--36886339	8	3.1	8	100	0	50	64	0	0	36	0.94
36888580--36888807	92	2.5	91	83	5	307	37	10	20	31	1.87
36890732--36890778	23	2.0	23	100	0	94	8	21	29	40	1.83
36896263--36896305	15	3.1	14	84	15	54	81	0	16	2	0.79
36896626--36896660	16	2.1	17	94	5	63	22	0	2	74	0.95
36898751--36898809	12	4.9	12	83	6	57	22	35	35	6	1.80
36898751--36898809	18	3.3	17	81	9	55	22	35	35	6	1.80
36899344--36899462	62	1.9	62	92	0	202	49	10	6	33	1.63
36902679--36902741	27	2.3	27	88	0	90	22	31	25	20	1.98
36903599--36903651	27	2.0	26	82	7	63	41	3	0	54	1.18
36904520--36904568	20	2.5	20	89	0	71	55	8	6	30	1.54
36904560--36906328	378	4.7	378	88	3	2288	29	18	18	33	1.95
36906550--36906583	18	1.9	17	88	5	50	50	14	0	35	1.44
36907034--36907068	18	1.9	18	94	0	61	42	2	0	54	1.15
36909123--36909154	13	2.3	15	89	10	50	40	3	15	40	1.63
36909134--36909299	34	4.9	34	74	7	122	42	12	13	31	1.81
36920384--36920465	44	1.9	43	82	7	105	37	19	18	24	1.94
36920677--36920808	67	2.0	68	81	4	160	45	10	12	31	1.77
36920701--36920808	34	3.2	34	72	9	87	45	11	12	31	1.76
36921651--36921695	22	2.0	22	95	0	81	42	6	17	33	1.76
36923321--36923346	7	3.7	7	100	0	52	61	0	11	26	1.30
36927261--36927286	10	2.6	10	100	0	52	26	0	7	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36938213--36938250	20	1.9	20	88	0	58	18	18	15	47	1.83
36944529--36944602	26	2.8	25	80	8	85	44	10	16	28	1.81
36947911--36947977	27	2.5	27	85	0	89	32	17	22	26	1.96
36949348--36949379	14	2.3	14	100	0	64	46	0	6	46	1.27
36953646--36953671	13	2.0	13	100	0	52	30	7	7	53	1.57
36954331--36954375	22	2.0	22	86	0	63	35	22	22	20	1.96
36965908--36965941	14	2.5	13	90	4	50	85	0	8	5	0.75
36991642--36991784	44	3.2	43	72	16	139	27	23	19	29	1.98
36991632--36991839	89	2.4	88	93	0	344	26	22	20	29	1.99
36991680--36991836	44	3.5	45	72	9	151	26	22	21	29	1.99
36992103--36992326	50	4.5	50	74	2	198	24	26	21	28	1.99
36992069--36992326	100	2.6	100	91	1	410	24	25	20	28	1.99
36997819--36997856	20	1.9	20	89	10	60	60	5	15	18	1.53
37002584--37002700	51	2.3	50	90	8	184	26	17	7	48	1.73
37007856--37007896	21	1.9	22	90	5	66	46	0	0	53	1.00
37007883--37007908	8	3.2	8	100	0	52	46	0	0	53	1.00
37009635--37009685	14	3.6	14	82	17	61	35	13	0	50	1.42
37009690--37009719	13	2.3	13	94	0	51	33	0	3	63	1.11
37011379--37011537	63	2.5	63	83	2	185	31	35	6	27	1.82
37016460--37016600	41	3.4	41	83	0	156	24	26	13	35	1.92
37019052--37019427	41	9.2	41	86	0	466	20	28	16	34	1.94
37019069--37019257	20	9.3	19	64	15	74	18	31	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37030264--37030314	13	3.9	13	92	0	84	39	21	7	31	1.82
37032015--37032061	6	7.8	6	76	9	51	68	0	0	31	0.90
37032010--37032061	18	2.9	17	80	8	68	71	0	0	28	0.87
37033020--37033059	16	2.5	17	84	11	50	52	5	5	37	1.45
37037049--37037164	22	5.1	23	80	4	137	44	37	3	13	1.61
37037049--37037164	45	2.6	46	84	4	155	44	37	3	13	1.61
37039308--37039392	44	1.9	44	95	0	152	28	12	15	43	1.83
37044720--37045184	231	2.0	231	99	0	912	39	18	12	30	1.87
37048335--37048399	25	2.6	25	75	4	60	40	13	13	32	1.85
37073639--37073686	25	2.0	24	84	8	62	29	2	16	52	1.56
37075570--37075635	31	2.2	31	83	2	80	28	33	13	24	1.93
37078756--37078864	12	9.1	12	72	0	92	43	17	20	19	1.89
37078756--37078864	6	18.2	6	67	0	56	43	17	20	19	1.89
37079019--37079078	25	2.3	27	73	18	65	45	18	13	23	1.84
37080654--37080696	21	2.0	21	100	0	86	44	4	27	23	1.73
37082161--37082193	15	2.2	15	89	10	50	21	0	3	75	0.93
37085745--37085789	24	1.9	23	86	13	65	20	4	8	66	1.36
37087664--37087787	32	3.9	32	83	0	158	38	19	19	22	1.93
37087649--37087787	64	2.2	64	82	1	172	40	18	18	22	1.92
37087966--37088011	11	4.0	11	81	10	56	52	26	2	19	1.58
37087959--37088040	24	3.4	24	84	0	92	48	23	4	23	1.70
37087973--37088045	24	3.0	24	88	4	94	47	23	4	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37088060--37088444	27	14.4	27	77	9	237	21	20	19	38	1.94
37088060--37088224	53	3.1	53	82	6	167	20	20	21	37	1.94
37088060--37088444	80	4.8	80	75	12	244	21	20	19	38	1.94
37088104--37088466	81	4.5	80	77	9	278	21	19	20	38	1.93
37088248--37088466	27	8.1	27	82	5	178	22	19	19	38	1.93
37088248--37088466	54	4.1	54	80	6	212	22	19	19	38	1.93
37089117--37089145	12	2.3	13	94	5	51	82	0	17	0	0.66
37089987--37090095	41	2.7	41	81	2	121	20	20	26	33	1.97
37090771--37090796	12	2.2	12	100	0	52	38	7	19	34	1.80
37093191--37093215	8	3.1	8	100	0	50	28	12	36	24	1.91
37094107--37094265	41	3.9	40	80	6	149	21	19	25	33	1.97
37094111--37094265	82	1.9	82	80	7	181	21	20	25	33	1.97
37096064--37096213	74	2.0	74	100	0	300	50	8	24	17	1.73
37098140--37098227	46	1.9	46	86	4	124	38	19	20	21	1.93
37098443--37098581	32	4.4	31	79	6	118	39	17	20	23	1.92
37098726--37098807	24	3.4	24	89	0	110	46	21	8	23	1.79
37098739--37098834	24	4.0	24	87	0	102	46	20	7	25	1.76
37098880--37099187	27	11.4	27	79	9	142	23	18	18	39	1.92
37098873--37099159	54	5.3	52	78	8	163	24	18	18	39	1.92
37098880--37099134	81	3.1	81	78	9	211	23	18	17	40	1.91
37098990--37099209	81	2.7	81	82	4	230	25	19	17	38	1.92
37098990--37099209	54	4.1	54	82	4	203	25	19	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37099731--37099766	8	4.5	8	96	0	63	0	13	22	63	1.29
37106744--37107055	159	2.0	159	90	2	493	35	11	15	37	1.84
37108806--37108882	13	5.9	13	93	0	136	23	10	27	38	1.87
37111494--37111555	32	1.9	32	100	0	124	45	0	8	46	1.32
37112132--37112301	84	2.0	85	98	1	333	50	11	9	28	1.70
37114214--37114502	143	2.0	143	92	0	479	28	13	23	33	1.93
37119685--37119732	8	6.1	8	86	11	64	54	31	0	14	1.41
37119680--37119733	16	3.3	16	84	10	74	57	27	0	14	1.38
37119689--37119741	24	2.2	25	80	10	65	62	22	0	15	1.32
37120993--37121018	11	2.4	11	100	0	52	76	0	0	23	0.78
37130115--37130165	22	2.3	22	96	0	93	39	1	31	27	1.68
37130598--37130658	26	2.3	26	83	8	70	52	1	3	42	1.27
37133189--37133274	21	4.0	22	82	8	97	38	22	20	18	1.94
37134188--37134241	17	3.2	17	80	16	60	0	24	5	70	1.08
37134159--37134239	30	2.8	29	78	10	85	0	28	4	66	1.12
37134454--37134518	30	2.3	27	86	7	85	41	1	0	56	1.08
37134469--37134518	27	2.0	26	84	11	68	44	0	0	56	0.99
37134459--37134510	15	3.4	16	75	25	58	40	1	0	57	1.10
37136765--37136803	21	1.9	20	89	5	60	43	2	2	51	1.29
37139649--37139687	15	2.7	15	88	4	53	41	2	0	56	1.13
37140921--37140968	21	2.4	21	80	16	57	75	0	8	16	1.04
37149146--37149185	21	1.9	21	89	0	62	17	0	7	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37156530--37156650	60	2.0	60	100	0	242	40	14	24	19	1.90
37164107--37164150	18	2.4	18	82	10	54	52	6	31	9	1.59
37164200--37164247	24	1.9	25	83	8	62	18	6	10	64	1.45
37172330--37172459	44	2.9	45	81	4	145	17	15	16	50	1.79
37172452--37172616	45	3.7	45	89	0	251	25	20	18	35	1.95
37172422--37172608	90	2.1	90	85	2	259	24	20	16	37	1.93
37174104--37174134	16	1.9	16	93	0	53	35	16	22	25	1.94
37191831--37191863	16	1.9	18	88	11	52	42	6	3	48	1.43
37192306--37192361	22	2.5	22	82	5	69	37	19	16	26	1.92
37197660--37197705	15	3.1	15	100	0	92	34	6	45	13	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136