genome.fa.s10.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  90  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29905193--29905283	46	2.0	46	93	0	155	46	2	14	37	1.57
29905215--29905283	21	3.0	24	72	14	81	49	2	11	36	1.54
29906727--29906799	22	3.3	22	84	9	87	10	0	41	47	1.39
29916516--29916566	23	2.2	23	92	0	84	23	5	9	60	1.50
29916516--29916573	23	2.6	23	86	5	66	25	6	10	56	1.57
29917077--29917282	102	2.0	102	99	0	403	37	19	5	37	1.76
29919800--29919853	9	5.7	9	79	12	63	24	5	27	42	1.76
29919800--29919854	20	2.8	20	91	2	85	23	5	27	43	1.75
29919917--29919994	29	2.8	27	76	16	86	29	10	25	34	1.89
29931445--29931491	23	2.0	23	100	0	94	42	4	12	40	1.63
29941007--29941100	44	2.1	44	86	3	127	34	24	2	39	1.67
29941541--29941654	56	2.0	57	98	1	221	53	1	15	28	1.52
29942100--29942124	12	2.1	12	100	0	50	24	36	24	16	1.94
29942286--29942343	9	6.4	9	89	0	71	44	22	6	25	1.77
29942442--29942485	18	2.4	18	88	0	61	13	2	43	40	1.57
29943679--29943722	18	2.4	18	88	0	61	13	2	43	40	1.57
29949135--29949174	20	2.0	20	90	5	62	55	0	0	45	0.99
29949370--29949395	12	2.2	12	100	0	52	38	0	15	46	1.46
29950439--29950534	46	2.1	46	98	0	183	35	10	7	46	1.66
29950445--29950517	23	3.2	23	62	14	60	34	12	6	46	1.68
29950812--29951506	347	2.0	347	100	0	1390	32	17	15	33	1.92
29952468--29952770	89	3.4	88	88	1	419	39	19	7	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29953200--29953452	88	2.9	85	85	4	337	34	9	18	37	1.84
29953730--29953796	24	2.9	23	73	6	64	26	8	1	62	1.33
29971703--29971923	108	2.0	109	99	0	435	51	9	11	26	1.70
29973242--29973285	22	2.0	21	83	12	54	68	0	22	9	1.18
29975429--29975544	43	2.7	43	90	2	171	17	31	28	22	1.96
29978047--29978076	4	7.5	4	92	0	51	23	3	0	73	0.98
29979656--29979708	24	2.2	24	89	0	79	49	9	3	37	1.53
29999994--30000067	31	2.5	29	84	4	85	40	14	2	41	1.60
30002062--30002104	18	2.4	19	84	7	63	23	4	2	69	1.18
30004470--30004512	18	2.4	19	84	7	63	23	4	2	69	1.18
30005406--30005437	14	2.4	14	94	5	57	53	0	0	46	1.00
30005088--30005805	358	2.0	359	99	0	1420	38	14	12	34	1.83
30005764--30005792	13	2.3	13	94	5	51	55	0	0	44	0.99
30007093--30007127	17	1.9	19	88	11	56	20	2	11	65	1.37
30014707--30014735	2	15.0	2	92	7	51	51	0	0	48	1.00
30019878--30019912	17	2.1	17	89	10	54	65	2	0	31	1.07
30027950--30028068	58	2.1	58	95	0	211	28	21	19	31	1.97
30029514--30029547	11	2.8	13	91	8	54	44	11	8	35	1.72
30030589--30030929	33	9.8	33	68	24	166	21	19	26	31	1.98
30030585--30030892	103	3.0	102	91	1	490	21	19	26	32	1.97
30031915--30031942	2	14.0	2	100	0	56	50	0	0	50	1.00
30037101--30037131	15	2.1	15	93	0	53	67	3	3	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30038344--30038375	11	2.8	12	86	13	50	65	0	0	34	0.93
30044975--30045119	74	2.0	74	97	2	274	49	4	12	33	1.59
30050733--30050763	12	2.6	12	94	0	53	70	6	0	22	1.09
30050667--30051088	212	2.0	211	84	6	561	36	19	22	22	1.96
30052141--30052431	44	6.6	44	70	12	159	26	20	22	29	1.99
30062352--30062403	22	2.4	20	75	15	50	26	1	0	71	0.97
30069828--30069867	21	1.9	21	84	0	53	62	2	30	5	1.29
30070678--30070719	5	8.4	5	97	0	57	11	0	59	28	1.33
30071911--30071941	2	15.5	2	100	0	62	48	0	0	51	1.00
30081316--30081352	15	2.6	15	87	8	51	51	0	0	48	1.00
30085287--30085354	33	2.1	33	91	0	109	47	16	27	8	1.76
30085294--30085364	33	2.2	33	82	5	81	52	14	28	5	1.64
30100454--30100506	19	2.8	19	76	0	61	11	11	13	64	1.51
30101664--30101753	46	2.0	46	97	0	171	16	31	6	45	1.73
30106775--30106835	24	2.6	24	76	2	61	63	13	9	13	1.51
30106794--30106838	24	2.0	24	86	8	67	60	8	15	15	1.59
30112257--30112321	29	2.2	30	80	2	69	33	6	24	35	1.80
30128875--30128937	29	2.1	30	82	5	74	53	1	11	33	1.46
30130023--30130286	132	2.0	132	99	0	519	24	17	28	29	1.97
30132709--30132753	22	2.0	22	82	0	54	60	4	2	33	1.29
30140646--30140684	6	6.2	6	82	11	51	46	15	17	20	1.84
30140646--30140684	13	3.1	12	85	7	51	46	15	17	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30140663--30140764	45	2.2	45	86	5	143	41	18	17	22	1.90
30140978--30141054	40	1.9	40	89	0	118	41	22	7	28	1.81
30141796--30141831	18	1.9	19	94	5	65	55	5	0	38	1.23
30141800--30141841	18	2.3	18	84	12	50	57	7	0	35	1.26
30146730--30146797	34	2.1	33	89	8	104	52	4	2	39	1.36
30151648--30152076	112	3.8	110	84	6	395	39	12	15	32	1.85
30151720--30152649	110	8.5	110	85	7	1087	38	13	15	32	1.87
30151719--30152648	111	8.5	109	84	7	1034	38	13	15	32	1.87
30156589--30157367	212	3.7	208	84	9	1002	33	16	13	36	1.88
30156559--30157336	105	7.3	106	77	11	667	34	16	13	35	1.88
30156802--30157336	105	5.0	107	88	6	730	34	16	14	35	1.89
30156594--30157367	428	1.8	423	86	7	1037	33	16	14	36	1.88
30167660--30167819	77	2.0	79	88	5	236	47	6	12	33	1.66
30172209--30172249	19	2.2	19	95	0	73	21	34	9	34	1.87
30174404--30174453	20	2.5	19	80	6	55	38	20	6	36	1.77
30177933--30177969	4	10.0	4	83	16	53	72	0	27	0	0.84
30177933--30177969	11	3.4	11	92	7	58	72	0	27	0	0.84
30177931--30177969	18	2.2	18	100	0	78	71	0	28	0	0.86
30178502--30178562	30	2.0	32	87	6	90	63	1	6	27	1.28
30178507--30178571	30	2.2	30	83	8	80	64	3	3	29	1.23
30184364--30184431	28	2.3	30	80	5	77	26	17	16	39	1.90
30204056--30204090	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30205239--30205303	34	1.9	34	90	0	103	24	23	27	24	2.00
30213947--30214092	71	2.0	72	98	1	285	30	4	5	60	1.38
30218087--30218126	13	3.1	13	92	0	71	30	5	22	42	1.75
30224797--30224826	15	2.0	15	100	0	60	6	26	20	46	1.75
30225856--30225892	19	1.9	19	94	0	65	32	18	18	29	1.96
30227955--30227990	16	2.2	16	95	0	63	38	33	0	27	1.57
30231292--30231370	32	2.4	33	79	10	81	29	1	13	55	1.46
30237771--30237799	2	14.5	2	100	0	58	48	0	0	51	1.00
30239617--30239891	44	6.2	45	73	9	217	28	24	16	30	1.97
30239883--30240228	132	2.6	132	87	1	480	26	23	20	28	1.99
30260397--30260451	26	2.1	26	86	6	76	43	9	21	25	1.82
30271249--30271331	43	1.9	43	100	0	166	38	7	15	38	1.75
30271255--30271325	24	3.2	24	65	19	71	33	7	16	42	1.76
30278940--30278991	24	2.2	24	85	0	68	38	3	7	50	1.50
30279557--30279653	7	13.6	7	85	4	122	44	37	0	18	1.50
30279557--30279650	22	4.4	22	82	9	122	45	35	0	19	1.50
30283433--30283484	24	2.2	24	85	0	68	38	3	7	50	1.50
30287401--30287439	20	2.0	20	84	0	51	61	2	5	30	1.31
30294476--30294753	138	2.0	139	95	4	508	42	28	10	19	1.83
30303854--30303905	25	2.1	25	100	0	104	61	7	11	19	1.53
30304337--30304460	43	2.9	43	78	4	124	29	29	19	21	1.98
30305369--30305393	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30308750--30308841	40	2.3	40	92	0	148	32	17	29	20	1.96
30316143--30316239	31	3.0	31	85	8	140	47	13	0	39	1.43
30316218--30316435	9	26.2	9	68	17	105	43	17	1	37	1.60
30316225--30316255	16	1.9	16	100	0	62	41	25	0	32	1.56
30316242--30316324	34	2.4	35	82	6	98	40	15	0	43	1.47
30316280--30316416	25	5.6	25	75	10	120	45	16	2	36	1.59
30316311--30316430	16	7.9	16	67	19	87	45	17	2	34	1.62
30320176--30320205	15	2.0	15	100	0	60	26	26	6	40	1.81
30324910--30325015	31	3.5	31	71	2	106	45	0	16	37	1.54
30324904--30325036	61	2.2	61	97	0	248	44	3	15	36	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136