genome.fa.s10.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  92  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30645232--30645478	113	2.2	112	88	2	352	31	10	14	42	1.81
30645232--30645516	113	2.5	113	85	3	281	30	11	15	42	1.83
30652656--30652694	18	2.2	17	86	13	53	33	0	20	46	1.51
30652920--30653064	23	6.3	23	93	0	236	18	20	27	33	1.96
30654891--30655040	77	2.0	76	89	2	230	32	18	11	38	1.86
30655094--30655123	11	2.7	11	94	0	51	73	0	3	23	0.98
30655325--30655360	18	1.9	18	88	5	54	66	0	5	27	1.13
30655295--30655360	19	3.5	19	74	13	57	63	0	7	28	1.21
30665737--30665791	26	2.3	23	77	17	65	27	9	20	43	1.81
30665745--30665795	26	2.0	26	96	0	93	23	7	21	47	1.77
30671847--30671881	6	5.5	6	87	12	52	65	0	20	14	1.26
30671796--30671924	64	2.0	64	85	8	174	47	5	20	27	1.72
30671873--30671959	44	2.0	44	88	0	129	40	8	19	32	1.81
30673944--30674029	25	3.4	25	77	6	84	22	26	18	32	1.97
30680193--30680222	15	2.0	15	93	0	51	3	6	16	73	1.18
30684394--30684419	11	2.4	11	100	0	52	7	38	7	46	1.61
30689182--30689217	16	2.2	16	100	0	72	38	36	0	25	1.56
30694550--30694750	21	9.7	20	69	8	91	17	21	15	44	1.86
30694554--30694688	42	3.2	42	81	4	148	19	22	14	43	1.87
30694844--30694882	12	3.2	13	89	7	55	41	0	10	48	1.37
30704437--30704495	27	2.2	27	93	0	100	33	16	11	37	1.86
30711920--30711951	2	15.5	2	93	6	55	50	46	0	3	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30713873--30714026	40	3.8	39	77	9	143	35	20	22	20	1.96
30714065--30714342	41	6.8	41	83	1	342	20	24	24	30	1.98
30714090--30714347	124	2.1	123	86	2	347	19	26	24	29	1.98
30714311--30714376	34	1.9	35	84	6	91	28	24	19	27	1.99
30716413--30716763	43	8.2	42	86	3	441	18	19	32	28	1.96
30716413--30716763	86	4.1	86	87	0	497	18	19	32	28	1.96
30716413--30716763	129	2.7	129	88	0	515	18	19	32	28	1.96
30716815--30716857	22	2.0	22	90	0	68	44	27	18	9	1.80
30718468--30718586	61	2.0	61	87	0	175	42	13	12	31	1.82
30731980--30732037	25	2.3	25	87	0	80	41	6	12	39	1.69
30732557--30732606	21	2.2	24	80	20	63	38	2	4	56	1.30
30735505--30735640	31	4.5	31	71	22	117	27	17	12	42	1.85
30735536--30735648	60	1.9	60	90	0	181	24	15	12	46	1.81
30736547--30736606	23	2.8	23	73	16	58	55	0	3	41	1.16
30742918--30742963	20	2.3	20	78	17	51	43	2	6	47	1.41
30750150--30750226	38	2.0	38	85	5	102	61	6	1	31	1.30
30753842--30753898	29	2.0	28	82	6	69	43	1	12	42	1.52
30756910--30756952	2	23.0	2	86	13	65	53	0	0	46	1.00
30757052--30757094	2	23.0	2	86	13	65	53	0	0	46	1.00
30756853--30757130	142	2.0	142	98	0	538	44	6	11	37	1.66
30759587--30759621	14	2.5	14	95	0	61	34	20	5	40	1.76
30760224--30760257	12	2.8	12	90	0	50	23	35	35	5	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30760812--30760903	48	1.9	48	90	0	148	50	9	7	32	1.64
30760837--30761087	62	4.1	62	91	2	416	49	6	6	38	1.54
30760837--30761087	122	2.0	123	93	1	423	49	6	6	38	1.54
30765494--30765554	24	2.6	23	85	10	79	32	0	0	67	0.91
30765503--30765541	12	3.4	11	82	10	51	23	0	0	76	0.78
30765510--30765553	12	3.7	12	81	0	52	34	0	0	65	0.93
30783045--30783089	20	2.2	20	96	0	81	42	4	20	33	1.72
30789885--30789910	13	2.0	13	100	0	52	30	7	15	46	1.74
30796867--30796906	20	2.1	20	86	9	57	45	2	2	50	1.28
30800726--30800792	19	3.2	21	76	20	70	41	1	2	53	1.25
30802553--30802633	23	3.4	24	73	18	64	44	2	3	49	1.33
30802561--30802599	15	2.6	15	79	0	51	38	2	5	53	1.37
30803277--30803343	19	3.2	21	76	20	70	41	1	2	53	1.25
30804909--30804950	18	2.3	18	95	0	75	19	38	26	16	1.92
30815132--30815225	46	2.0	46	95	0	170	19	29	18	32	1.95
30816721--30816918	105	1.9	101	83	6	254	31	17	24	26	1.97
30816859--30816935	33	2.3	32	80	6	82	31	18	24	25	1.97
30816754--30816952	105	1.9	105	82	6	251	33	18	23	25	1.97
30825989--30826041	26	2.0	26	81	0	61	52	0	0	47	1.00
30827390--30827544	77	2.0	78	98	1	303	50	6	10	32	1.62
30831194--30831262	3	23.0	3	100	0	138	66	0	0	33	0.92
30835878--30835916	19	2.1	19	100	0	78	30	30	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30837370--30837412	3	14.0	3	95	4	77	65	0	34	0	0.93
30837371--30837417	6	7.4	7	95	2	50	61	0	38	0	0.96
30838462--30838517	26	2.2	26	100	0	112	35	23	12	28	1.91
30841220--30841264	17	2.7	16	80	10	54	11	8	0	80	0.92
30841212--30841264	24	2.2	24	83	12	74	15	7	0	77	0.98
30842260--30842284	13	1.9	13	100	0	50	76	0	24	0	0.80
30848374--30848446	11	6.5	11	76	7	58	23	27	1	47	1.59
30848396--30848446	22	2.3	22	93	0	84	23	31	1	43	1.65
30848410--30848507	51	1.9	51	87	4	144	26	26	2	44	1.65
30848386--30848483	11	9.3	11	66	16	55	23	28	2	45	1.64
30848514--30848547	17	1.9	17	88	5	50	38	0	0	61	0.96
30850985--30851254	135	2.0	135	85	0	369	23	22	18	35	1.95
30852386--30852416	9	3.4	9	90	0	53	25	12	22	38	1.90
30853198--30853228	5	6.2	5	100	0	62	22	19	19	38	1.93
30853318--30853343	5	5.2	5	100	0	52	19	19	19	42	1.90
30855103--30855513	124	3.3	124	90	0	642	30	18	18	32	1.95
30855707--30855750	6	7.3	6	89	0	70	36	45	2	15	1.59
30868028--30868285	64	4.0	64	99	0	507	20	12	12	55	1.69
30871623--30871667	24	1.9	23	86	4	63	51	11	8	28	1.68
30881998--30882062	25	2.5	26	87	2	105	21	13	26	38	1.91
30895381--30895660	41	6.8	41	95	0	488	33	28	19	18	1.96
30904965--30904989	9	2.8	9	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30908456--30908515	28	2.1	30	81	15	81	60	0	10	30	1.30
30911961--30911991	1	31.0	1	93	0	53	96	0	3	0	0.21
30912395--30912425	4	7.8	4	100	0	62	25	48	0	25	1.52
30915252--30915335	25	3.4	25	90	1	125	40	2	0	57	1.12
30915298--30915340	13	3.5	13	78	12	54	48	0	0	51	1.00
30920360--30920416	28	2.1	28	83	3	71	17	7	10	64	1.46
30922836--30922901	20	3.2	20	71	25	50	40	3	7	48	1.47
30926532--30926571	18	2.2	19	86	4	55	27	0	27	45	1.54
30930615--30930651	2	18.5	2	100	0	74	48	0	0	51	1.00
30931535--30931579	17	2.6	19	76	20	53	31	0	0	68	0.89
30931562--30931980	208	2.0	209	99	0	831	47	6	9	36	1.62
30932295--30932554	80	3.2	81	79	4	290	38	5	12	43	1.66
30933468--30933499	12	2.7	12	95	0	55	34	40	0	25	1.56
30933468--30933499	15	2.1	15	94	0	55	34	40	0	25	1.56
30936308--30936340	16	2.0	17	88	5	50	48	0	6	45	1.27
30936392--30936508	55	2.1	54	96	0	198	48	3	5	41	1.44
30936414--30936498	25	3.2	25	66	26	66	48	2	4	44	1.36
30936418--30936512	31	3.3	31	64	19	87	50	3	5	41	1.41
30936392--30936488	32	3.3	32	68	25	104	49	3	7	40	1.46
30937312--30937356	17	2.6	19	76	20	53	31	0	0	68	0.89
30937864--30938123	80	3.2	81	79	4	290	38	5	12	43	1.66
30942767--30942794	5	5.6	5	100	0	56	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30943819--30943886	34	2.0	34	100	0	136	20	11	26	41	1.87
30953130--30953183	18	2.9	18	77	2	63	72	1	5	20	1.14
30953148--30953197	23	2.2	23	85	7	66	72	2	4	22	1.12
30953640--30953688	25	2.0	25	88	8	73	38	2	2	57	1.22
30956443--30956477	3	11.7	3	100	0	70	65	0	34	0	0.93
30957559--30957604	12	4.0	12	78	21	62	0	56	2	41	1.11
30961834--30961889	27	2.1	27	100	0	112	23	10	37	28	1.88
30965651--30965732	41	2.0	41	100	0	164	48	17	9	24	1.76
30966340--30966373	7	5.0	7	96	3	61	0	0	55	44	0.99
30967326--30968044	365	2.0	365	96	0	1332	38	15	14	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136