genome.fa.s10.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  13  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4073117--4073444	27	12.3	27	84	3	396	43	19	19	17	1.89
4073755--4073859	28	3.8	28	85	0	129	20	23	23	32	1.98
4074669--4074704	18	2.1	17	89	5	54	47	11	25	16	1.79
4079393--4079431	10	3.8	10	89	3	51	12	0	46	41	1.42
4080750--4081023	27	10.1	27	84	2	336	41	20	20	17	1.90
4081380--4081458	28	2.8	28	88	0	122	27	26	18	26	1.98
4088685--4088744	26	2.3	26	88	2	86	26	23	21	28	1.99
4089206--4089230	6	4.2	6	100	0	50	68	0	0	32	0.90
4104816--4104860	19	2.4	18	89	10	72	24	17	8	48	1.75
4107087--4107162	37	2.1	36	85	11	102	53	3	3	38	1.38
4117392--4117555	84	2.0	82	81	2	193	28	17	21	32	1.96
4119130--4119175	22	2.1	22	100	0	92	36	13	19	30	1.90
4122540--4122569	16	1.9	15	93	6	51	50	13	0	36	1.42
4129341--4129389	15	3.2	15	85	8	55	30	0	20	48	1.50
4129625--4129787	22	7.0	22	74	16	125	33	11	14	41	1.81
4129625--4129787	47	3.5	47	91	3	258	33	11	14	41	1.81
4129628--4129841	47	4.6	46	83	10	185	33	10	15	40	1.81
4129631--4129841	94	2.3	94	82	8	245	33	10	15	40	1.82
4134727--4134799	29	2.6	29	79	16	82	38	0	2	58	1.12
4134732--4134799	5	13.4	5	77	20	70	39	0	1	58	1.07
4135414--4135511	48	2.0	49	96	4	180	38	12	14	34	1.83
4147183--4147223	5	7.6	5	84	15	55	41	53	0	4	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4147171--4147213	18	2.4	18	88	0	59	41	44	2	11	1.53
4147331--4147397	9	7.4	9	84	0	80	25	7	20	46	1.77
4153041--4153092	26	2.0	26	100	0	104	46	15	15	23	1.83
4157194--4157443	117	2.1	117	98	1	464	38	4	4	53	1.41
4164095--4164119	13	1.9	13	100	0	50	40	12	0	48	1.40
4165490--4165541	24	2.2	24	85	0	68	48	9	3	38	1.54
4170109--4170137	3	9.7	3	100	0	58	34	31	0	34	1.58
4171723--4171757	18	2.1	16	89	10	52	0	17	11	71	1.14
4172241--4172271	3	10.3	3	100	0	62	32	0	0	67	0.91
4176591--4176665	38	2.0	36	87	5	105	48	9	14	28	1.75
4185332--4185443	57	1.9	57	87	8	165	27	18	6	47	1.73
4189145--4189400	29	8.8	29	76	5	169	25	26	13	35	1.92
4189178--4189399	58	3.8	57	76	8	214	24	25	12	36	1.91
4189173--4189399	87	2.6	86	86	3	303	25	25	12	36	1.91
4190435--4190473	12	3.1	13	88	3	53	51	7	0	41	1.31
4192590--4192753	34	4.8	34	81	7	188	41	15	25	18	1.89
4192577--4192753	69	2.6	68	83	5	212	42	14	25	18	1.87
4193032--4193058	14	1.9	14	100	0	54	37	11	7	44	1.68
4196237--4196354	41	2.9	41	93	0	209	19	22	27	29	1.98
4197605--4197645	21	2.0	20	85	4	55	19	0	41	39	1.52
4197888--4197929	19	2.2	19	91	0	66	80	2	2	14	0.90
4206488--4206545	26	2.2	26	100	0	116	31	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4206667--4206727	26	2.3	26	94	0	104	34	13	14	37	1.85
4209289--4209359	26	2.7	26	91	0	106	39	19	23	16	1.92
4209534--4210217	27	25.3	27	83	4	727	16	20	19	42	1.89
4209539--4210210	297	2.3	297	98	0	1283	16	20	19	42	1.89
4210857--4210929	34	2.1	35	89	2	112	52	12	27	8	1.67
4211086--4211114	5	5.8	5	100	0	58	82	0	0	17	0.66
4214273--4214588	23	13.3	24	72	8	130	40	16	12	30	1.85
4214284--4214610	47	6.9	47	72	7	214	41	16	12	29	1.86
4214285--4214568	74	3.9	72	81	8	308	41	16	12	29	1.84
4214285--4214568	70	4.0	70	82	4	334	41	16	12	29	1.84
4215833--4215906	23	3.2	22	81	11	78	39	17	12	31	1.86
4216022--4216170	23	6.4	23	78	3	129	40	18	16	25	1.90
4216022--4216155	47	2.9	47	82	3	119	41	17	14	26	1.88
4215845--4216128	70	4.0	70	80	6	309	40	16	12	30	1.85
4215845--4216125	145	1.9	145	82	2	350	40	16	12	30	1.85
4217052--4217145	40	2.5	37	87	5	125	26	26	9	37	1.87
4218011--4218048	20	1.9	20	88	0	58	36	10	0	52	1.36
4219886--4219953	34	2.0	34	85	5	93	29	23	26	20	1.99
4223159--4223986	279	2.9	278	83	5	934	35	15	14	35	1.88
4231695--4231767	25	2.9	25	87	0	101	32	19	19	28	1.96
4234334--4234449	61	1.9	58	87	5	169	49	4	3	43	1.39
4236615--4236764	42	3.5	44	79	7	132	36	24	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4236770--4236876	41	2.6	41	91	2	180	24	26	20	28	1.99
4242538--4242595	22	2.7	22	79	12	66	17	3	3	75	1.07
4256149--4256411	69	3.8	69	81	0	274	37	21	20	20	1.94
4256149--4256411	138	1.9	138	82	0	328	37	21	20	20	1.94
4265431--4265465	7	5.1	7	89	6	54	68	0	17	14	1.21
4265432--4265461	13	2.3	13	94	0	51	70	0	16	13	1.18
4265448--4265481	17	2.0	17	88	11	52	64	0	17	17	1.29
4266792--4267095	129	2.4	128	90	2	466	31	19	23	25	1.98
4267086--4267651	216	2.6	216	89	2	861	29	18	23	27	1.98
4268302--4268381	39	2.1	39	97	0	151	45	38	5	11	1.62
4270950--4270979	13	2.3	13	94	0	51	73	16	6	3	1.18
4277463--4277530	3	22.7	3	93	0	118	29	0	2	67	1.05
4285690--4285748	2	29.5	2	92	0	91	44	0	55	0	0.99
4288991--4289016	7	3.7	7	100	0	52	84	0	0	15	0.62
4296761--4296791	16	1.9	16	93	0	53	54	0	3	41	1.16
4298915--4299018	30	3.3	30	86	5	136	32	2	15	49	1.59
4299141--4299239	43	2.3	43	84	3	128	32	17	26	24	1.97
4302356--4302511	45	3.4	44	78	14	140	24	29	19	26	1.99
4302411--4302511	44	2.3	45	86	11	138	23	31	18	25	1.98
4302524--4302913	132	3.0	132	88	0	584	28	23	19	28	1.98
4302906--4303417	89	5.8	89	99	0	997	27	25	16	29	1.97
4302943--4303674	89	8.2	88	91	1	423	28	24	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4302906--4303679	178	4.4	178	88	2	921	27	25	17	30	1.97
4302906--4303674	267	2.9	267	87	2	911	27	25	17	30	1.97
4316495--4316526	17	1.9	17	93	6	57	53	0	9	37	1.34
4321771--4321805	16	2.1	17	94	5	63	42	20	11	25	1.85
4322680--4322722	11	4.0	10	85	14	59	27	32	0	39	1.57
4324834--4324873	21	1.9	21	84	0	53	30	45	20	5	1.72
4328231--4328645	126	3.3	125	87	3	573	26	19	19	33	1.96
4330092--4330160	31	2.3	29	78	9	77	43	7	18	30	1.77
4335302--4335345	16	2.9	15	83	6	54	25	9	0	65	1.21
4336784--4336820	9	4.1	9	92	0	65	45	13	10	29	1.77
4345317--4345369	24	2.2	24	96	3	99	24	22	7	45	1.78
4349742--4349787	22	2.1	22	100	0	92	36	13	21	28	1.91
4352325--4352359	18	1.9	18	88	11	54	51	0	0	48	1.00
4352593--4352659	31	2.2	32	89	5	102	52	10	1	35	1.45
4356553--4356706	79	1.9	79	96	0	281	39	12	24	24	1.89
4356802--4356859	22	2.6	22	81	7	64	41	17	5	36	1.72
4357410--4357685	89	3.1	89	86	0	372	27	24	22	26	2.00
4357436--4357666	44	5.2	44	65	10	128	23	25	23	27	2.00
4357702--4357836	44	3.1	42	75	10	119	31	17	17	32	1.94
4358214--4358668	44	10.2	44	79	3	394	28	22	18	30	1.97
4358231--4358665	178	2.4	178	89	1	640	28	23	18	30	1.97
4358945--4359000	24	2.3	24	90	0	85	26	26	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4363174--4363217	19	2.3	19	84	7	54	38	11	25	25	1.89
4365617--4365767	79	1.9	79	95	0	275	41	12	21	25	1.88
4365878--4365922	22	2.0	22	86	4	63	37	17	6	37	1.76
4369910--4369939	2	15.0	2	100	0	60	50	0	0	50	1.00
4370179--4370211	2	17.0	2	87	6	50	54	0	0	45	0.99
4370179--4370211	17	1.9	17	93	0	57	54	0	0	45	0.99
4369877--4370395	272	1.9	275	97	2	981	39	6	14	39	1.72
4371072--4371207	13	10.5	13	69	16	50	39	5	4	50	1.44
4371070--4371150	42	1.9	42	85	5	110	41	7	4	45	1.53
4371114--4371242	40	2.9	47	75	15	137	39	5	3	51	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136