genome.fa.s10.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  94  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31391266--31391291	13	2.0	13	100	0	52	46	0	7	46	1.31
31407824--31407897	21	3.7	21	79	10	84	48	0	1	50	1.09
31411030--31411124	39	2.3	44	78	17	137	47	32	2	17	1.60
31411042--31411645	31	19.2	31	93	4	1043	50	26	3	19	1.62
31411558--31411678	38	3.4	38	78	18	152	50	26	3	19	1.63
31411814--31411876	17	3.5	17	69	12	54	34	3	12	49	1.57
31411811--31411885	37	2.0	37	94	0	132	36	4	14	45	1.64
31411884--31411914	9	3.4	9	95	0	53	25	9	22	41	1.84
31412243--31412267	12	2.1	12	100	0	50	60	0	8	32	1.26
31413083--31413169	44	2.0	44	93	0	147	12	14	19	52	1.73
31413884--31413910	3	9.0	3	100	0	54	0	33	0	66	0.92
31414403--31414444	16	2.6	15	88	11	57	0	9	4	85	0.72
31414406--31414444	15	2.4	16	87	8	53	0	7	5	87	0.68
31414781--31414814	17	2.1	17	94	5	61	32	23	11	32	1.91
31419485--31419530	23	2.0	23	87	4	67	34	0	2	63	1.07
31421947--31422072	62	2.0	62	95	0	225	28	7	20	43	1.78
31427957--31427984	2	14.0	2	100	0	56	50	0	0	50	1.00
31429153--31429389	117	2.0	118	99	0	467	40	5	6	47	1.54
31439481--31439569	39	2.3	39	81	13	94	42	3	5	48	1.43
31447613--31447702	16	6.1	14	74	13	65	34	1	2	62	1.15
31447625--31447656	7	4.6	7	100	0	64	40	0	0	59	0.97
31447613--31447695	23	3.6	23	75	6	78	34	1	2	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31450703--31450761	16	3.4	16	78	17	73	38	20	8	32	1.83
31450715--31450779	20	3.5	20	78	18	86	40	16	9	33	1.81
31450701--31450779	36	2.2	35	95	4	149	39	17	8	34	1.81
31450911--31450998	25	3.6	25	70	1	70	31	21	20	26	1.98
31453009--31453058	20	2.6	19	78	6	55	60	10	0	30	1.30
31453014--31453072	19	3.1	19	82	2	64	54	10	0	35	1.34
31457999--31458039	19	2.0	20	86	9	57	36	0	0	63	0.95
31458234--31458285	26	2.0	26	85	7	70	59	3	0	36	1.16
31458541--31458574	15	2.2	16	89	5	52	50	5	0	44	1.26
31459176--31459239	26	2.4	27	77	10	71	32	1	1	64	1.13
31459227--31459623	198	2.0	199	99	0	787	41	10	13	35	1.78
31472613--31472662	26	1.9	26	95	0	91	32	20	18	30	1.96
31480690--31480718	8	3.6	8	100	0	58	24	0	0	75	0.80
31503310--31503343	14	2.5	13	86	9	50	50	0	0	50	1.00
31503317--31503344	14	2.0	14	100	0	56	57	0	0	42	0.99
31503573--31503606	17	2.0	17	88	11	52	38	5	8	47	1.59
31504588--31504624	9	4.1	9	85	0	56	48	13	8	29	1.71
31504803--31504862	30	2.0	31	83	9	79	20	38	0	41	1.52
31515039--31515082	23	1.9	23	85	0	61	40	2	2	54	1.25
31516422--31516521	8	11.6	8	70	16	58	59	1	0	40	1.04
31516433--31516522	35	2.6	35	79	11	112	57	1	0	41	1.06
31516460--31516516	17	3.2	17	70	5	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31526191--31526226	18	2.1	17	89	5	54	63	2	8	25	1.36
31526658--31526704	19	2.5	20	79	6	53	76	6	12	4	1.12
31529929--31529965	18	2.1	18	94	0	65	62	2	0	35	1.10
31529929--31529994	9	6.9	9	73	21	55	63	1	1	33	1.13
31534521--31534557	3	12.3	3	94	0	65	62	0	35	2	1.10
31535598--31535648	23	2.3	22	83	10	59	29	7	1	60	1.36
31535712--31535742	6	5.2	6	100	0	62	16	0	0	83	0.64
31536012--31536042	16	1.9	16	100	0	62	70	6	0	22	1.09
31537143--31537183	21	2.0	21	85	0	55	2	19	0	78	0.87
31538230--31538294	14	5.0	14	70	21	52	78	0	9	12	0.96
31549141--31549172	13	2.5	13	95	5	57	34	6	0	59	1.23
31549511--31549562	18	3.1	18	83	8	56	42	1	0	55	1.10
31552962--31552991	13	2.3	13	94	0	51	3	10	0	86	0.67
31553657--31553718	31	2.0	31	87	0	88	51	6	14	27	1.66
31554234--31554516	109	2.6	109	92	2	471	34	20	14	30	1.93
31556018--31556066	26	1.9	25	83	4	62	34	12	10	42	1.76
31557096--31557174	4	18.8	4	72	12	52	69	6	5	18	1.29
31558166--31558218	20	2.6	20	79	8	54	73	5	9	11	1.24
31559774--31559838	30	2.2	30	91	5	105	20	6	16	56	1.61
31562412--31562606	98	2.0	98	95	0	354	36	25	10	27	1.89
31563626--31563727	19	5.3	19	89	4	123	37	14	8	39	1.78
31563626--31563727	40	2.6	38	90	3	141	37	14	8	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31572686--31572718	8	4.2	8	84	7	50	75	0	0	24	0.80
31572684--31572720	15	2.6	14	91	8	65	67	0	0	32	0.91
31578219--31578345	2	63.5	2	100	0	254	49	0	0	50	1.00
31581093--31581134	21	2.0	20	86	4	57	59	7	2	30	1.37
31584055--31584088	17	2.0	17	88	0	50	38	0	2	58	1.13
31586698--31586725	3	9.3	3	100	0	56	67	0	0	32	0.91
31593469--31593522	15	3.6	15	70	9	56	27	16	7	48	1.73
31593455--31593528	30	2.5	30	88	0	112	24	20	6	48	1.73
31596102--31596142	15	2.6	16	81	14	50	43	0	7	48	1.30
31597457--31597498	12	3.1	13	80	19	50	52	2	9	35	1.47
31597834--31597881	18	2.5	20	80	16	57	75	0	2	22	0.91
31597911--31597973	19	3.2	19	71	13	56	66	4	3	25	1.26
31597907--31597984	30	2.7	28	78	7	77	61	5	3	29	1.35
31622227--31622254	14	2.0	14	100	0	56	14	7	28	50	1.69
31632057--31632089	12	2.6	13	85	9	50	18	0	0	81	0.68
31632971--31632999	10	2.9	10	100	0	58	62	0	27	10	1.28
31638493--31638527	17	2.1	17	88	0	52	45	20	5	28	1.73
31641654--31641729	21	3.7	20	84	6	91	15	25	15	43	1.86
31641963--31641989	8	3.4	8	100	0	54	37	0	14	48	1.45
31642872--31642950	37	2.1	38	95	2	142	37	5	15	41	1.69
31644406--31644430	11	2.3	11	100	0	50	36	0	0	64	0.94
31646614--31646650	15	2.5	15	95	0	65	32	24	35	8	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31650958--31650997	21	1.9	21	100	0	80	15	35	17	32	1.91
31654367--31654412	22	2.1	22	92	8	76	69	8	0	21	1.15
31654367--31654421	22	2.5	21	82	5	65	67	10	0	21	1.21
31661916--31661962	18	2.6	18	79	0	58	38	17	10	34	1.84
31672678--31672702	7	3.6	7	100	0	50	0	0	16	84	0.63
31675419--31675459	2	20.0	2	95	5	73	48	2	0	48	1.14
31680413--31680625	47	4.6	47	92	5	364	33	11	15	39	1.83
31680524--31680600	24	3.2	24	67	23	63	35	11	14	38	1.82
31680413--31680700	89	3.2	93	87	9	374	32	11	15	40	1.82
31680587--31680655	36	1.9	36	93	0	120	30	8	14	46	1.75
31680635--31680700	22	2.9	23	80	12	82	30	12	15	42	1.83
31680540--31680700	83	1.9	83	89	2	252	32	11	14	42	1.81
31681314--31681381	33	2.1	33	88	0	100	36	5	2	54	1.40
31681339--31681383	24	1.9	23	82	13	56	35	8	0	55	1.31
31698734--31699634	89	10.1	90	90	1	1275	31	19	23	25	1.98
31704887--31704930	21	2.0	22	83	12	56	65	4	13	15	1.41
31706502--31706678	86	2.1	86	94	0	309	45	14	14	25	1.83
31707464--31707524	21	2.9	22	80	9	65	40	0	4	54	1.22
31707539--31707590	19	2.7	19	82	8	61	21	3	3	71	1.18
31707539--31707589	10	5.3	9	81	11	57	21	3	1	72	1.11
31714295--31714414	34	3.1	40	64	30	107	45	6	3	45	1.46
31714317--31714429	34	3.1	34	64	26	88	45	9	3	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31714292--31714442	74	2.0	75	98	1	295	45	7	3	42	1.52
31718109--31718135	14	1.9	14	100	0	54	81	0	0	18	0.69
31720680--31720708	14	2.0	15	93	6	51	89	0	10	0	0.48
31732720--31732753	15	2.3	15	89	0	50	82	0	0	17	0.67
31733316--31733369	26	2.1	26	100	0	108	27	25	3	42	1.72
31737822--31737849	3	9.3	3	100	0	56	32	0	0	67	0.91
31738302--31738347	16	3.1	15	76	11	51	54	8	0	36	1.32
31740808--31741184	194	1.9	192	90	7	592	37	5	14	42	1.68
31745433--31745506	25	2.8	26	79	6	78	33	18	20	27	1.96
31745597--31745648	25	2.1	24	82	3	59	34	11	28	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136