genome.fa.s10.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  71  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23305831--23305916	39	2.2	41	85	6	115	34	19	23	22	1.96
23305948--23306216	41	6.5	41	89	0	403	24	20	23	31	1.98
23306603--23306764	82	2.0	82	90	2	254	25	2	27	45	1.66
23307827--23307913	41	2.1	41	93	0	147	27	16	18	37	1.92
23311751--23311916	43	3.9	43	93	2	264	23	18	27	30	1.98
23324804--23324852	3	16.7	3	95	4	91	32	0	0	67	0.91
23349192--23349244	25	2.2	24	89	3	79	22	24	16	35	1.95
23349209--23349273	25	2.6	25	82	0	67	23	21	21	33	1.97
23352364--23352398	16	2.2	16	100	0	70	37	20	5	37	1.76
23352870--23352926	22	2.6	23	83	8	73	43	19	22	14	1.86
23353899--23353941	5	8.6	5	100	0	86	60	0	0	39	0.97
23353899--23353984	10	8.0	10	74	14	55	51	2	1	45	1.21
23356877--23356902	2	13.0	2	100	0	52	50	0	0	50	1.00
23359931--23359972	15	2.8	15	78	10	50	33	2	0	64	1.07
23370258--23370320	28	2.2	30	88	5	94	25	20	7	46	1.78
23370267--23370344	28	2.7	28	82	9	77	29	23	5	42	1.75
23370302--23370380	30	2.7	29	76	18	81	37	20	1	40	1.60
23370631--23370669	21	1.9	20	84	5	51	71	10	12	5	1.28
23370940--23371015	11	7.0	11	77	15	70	77	0	22	0	0.77
23370937--23371021	23	3.6	22	79	16	82	77	0	22	0	0.77
23370933--23370996	33	1.9	34	87	9	96	73	0	26	0	0.84
23370941--23371021	24	3.4	24	77	17	80	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23370946--23371015	33	2.2	32	84	7	88	78	0	21	0	0.75
23370949--23371020	10	6.9	10	77	17	51	79	0	20	0	0.74
23371037--23371062	13	2.0	13	100	0	52	23	61	15	0	1.33
23371914--23372043	18	7.3	17	74	10	100	35	11	8	44	1.71
23371914--23372007	36	2.6	36	83	1	118	31	12	9	45	1.75
23371914--23372044	54	2.4	54	82	5	149	35	11	8	44	1.71
23371986--23372047	19	3.3	20	69	15	60	45	6	6	41	1.55
23372062--23372122	17	3.5	17	82	4	77	32	16	8	42	1.78
23372062--23372128	18	3.8	18	83	13	86	31	17	7	43	1.77
23378933--23379276	74	4.7	74	96	0	645	27	16	21	34	1.95
23378933--23379276	147	2.3	148	96	0	645	27	16	21	34	1.95
23380483--23382637	80	27.1	80	97	1	3870	27	17	22	33	1.96
23382596--23382687	46	2.0	46	95	0	166	33	16	9	40	1.81
23382655--23383608	79	12.3	79	88	6	1373	25	17	21	36	1.94
23383768--23383852	29	3.0	28	77	3	100	34	20	3	42	1.69
23384203--23384266	22	3.0	21	84	11	76	75	6	15	3	1.14
23384233--23384272	15	2.7	16	85	11	50	77	2	20	0	0.88
23384349--23384403	4	14.0	4	78	14	53	70	0	29	0	0.87
23384349--23384445	24	4.5	22	72	22	75	71	0	27	1	0.93
23384366--23384446	21	3.9	21	75	3	65	72	0	25	1	0.92
23385110--23385158	14	3.3	15	83	11	64	81	0	18	0	0.69
23385111--23385166	16	3.1	18	77	12	62	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23385649--23385732	18	4.8	18	77	11	84	32	11	10	45	1.75
23387825--23388022	42	4.7	42	89	0	270	32	23	21	23	1.98
23387825--23388064	84	2.9	84	82	1	275	30	22	21	25	1.98
23390825--23390925	36	2.8	36	83	3	112	40	8	19	30	1.82
23390863--23390954	31	2.8	33	85	8	107	39	8	20	31	1.83
23390937--23390961	7	3.6	7	100	0	50	52	0	16	32	1.44
23390909--23390989	38	2.1	38	90	4	128	40	4	22	32	1.75
23391208--23391322	60	1.9	59	82	1	140	33	24	25	17	1.96
23392843--23392930	35	2.5	34	78	8	97	19	27	28	25	1.99
23395304--23395339	18	2.0	18	88	0	54	19	8	19	52	1.70
23395586--23395629	20	2.3	18	84	7	52	36	0	4	59	1.18
23396302--23396356	21	2.5	22	79	2	76	67	14	9	9	1.42
23397172--23397217	19	2.4	18	79	10	56	15	13	0	71	1.14
23398089--23398117	2	14.5	2	100	0	58	0	0	48	51	1.00
23402538--23402574	14	2.6	14	86	0	56	51	13	18	16	1.76
23425687--23425731	21	2.1	21	87	0	63	44	15	22	17	1.86
23432697--23432726	15	2.0	15	100	0	60	46	13	20	20	1.83
23434538--23434563	11	2.4	11	100	0	52	26	0	7	65	1.20
23434501--23434823	161	2.0	162	96	0	603	28	14	23	32	1.95
23436562--23436607	23	2.0	23	82	0	56	17	17	17	47	1.83
23455199--23455248	21	2.5	20	78	21	59	64	6	0	30	1.18
23460965--23461035	31	2.3	32	76	11	76	54	18	4	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23465695--23465738	17	2.6	16	79	10	52	75	0	18	6	1.02
23472435--23472481	21	2.3	21	96	3	87	36	0	8	55	1.31
23472707--23472738	5	6.4	5	100	0	64	0	18	40	40	1.51
23479877--23479905	15	2.0	15	93	6	51	0	17	6	75	1.01
23487521--23487562	22	1.9	22	85	9	59	40	0	0	59	0.97
23489095--23489129	17	2.1	17	94	0	61	42	14	5	37	1.69
23498309--23498349	21	1.9	22	85	5	57	48	2	4	43	1.37
23507661--23507711	24	2.1	24	88	0	75	39	0	7	52	1.30
23507685--23507722	19	2.1	19	90	5	60	31	0	7	60	1.25
23510316--23510345	7	4.3	7	100	0	60	83	0	0	16	0.65
23513832--23513868	3	12.3	3	100	0	74	32	0	0	67	0.91
23529091--23529158	22	3.3	20	81	16	86	63	1	4	30	1.23
23531357--23531395	14	2.9	13	80	3	51	48	2	0	48	1.15
23541097--23541182	27	3.2	27	77	0	100	17	24	32	25	1.97
23561833--23561869	19	1.9	19	88	0	56	5	24	0	70	1.08
23566971--23566999	12	2.5	12	94	5	51	37	0	20	41	1.53
23571225--23571257	16	2.1	16	94	0	57	39	0	6	54	1.25
23573270--23573311	13	3.3	13	75	18	52	54	2	2	40	1.26
23578769--23578815	19	2.4	20	85	3	60	55	0	2	42	1.12
23579536--23579573	19	2.0	19	89	0	58	36	0	2	60	1.11
23582635--23582684	18	2.7	18	81	3	64	36	2	2	60	1.20
23582635--23582685	19	2.7	20	79	11	63	37	1	1	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23590445--23590488	19	2.5	17	85	7	52	38	15	0	45	1.47
23590450--23590488	17	2.2	19	86	9	55	38	15	0	46	1.46
23599054--23599088	2	17.5	2	100	0	70	51	0	0	48	1.00
23600460--23600540	31	2.7	29	84	5	90	30	6	14	48	1.69
23604919--23604960	21	2.0	21	81	9	50	14	7	26	52	1.67
23612004--23612059	22	2.5	23	82	2	69	51	1	1	44	1.22
23612035--23612074	16	2.5	16	91	0	62	47	2	7	42	1.45
23612085--23612292	59	3.4	59	89	7	308	39	4	8	47	1.54
23612147--23612174	9	3.1	9	100	0	56	32	0	10	57	1.33
23612063--23612306	68	3.7	67	87	10	389	40	4	8	47	1.53
23612077--23612306	127	1.8	126	96	0	424	40	3	8	47	1.53
23612274--23612301	9	3.1	9	100	0	56	32	0	10	57	1.33
23615450--23615505	22	2.5	23	82	2	69	51	1	1	44	1.22
23615481--23615520	16	2.5	16	91	0	62	47	2	7	42	1.45
23615523--23615642	59	2.1	59	90	1	197	41	5	9	44	1.58
23615708--23615758	25	2.0	27	88	7	79	60	1	0	37	1.08
23620314--23620372	29	2.0	29	84	12	77	40	10	10	38	1.73
23621840--23622054	114	1.9	112	88	1	322	21	20	15	42	1.88
23623666--23623705	22	1.9	21	90	10	64	55	5	0	40	1.22
23624750--23624850	30	3.6	30	70	22	83	45	11	17	24	1.82
23633295--23633341	21	2.3	20	80	20	53	57	0	2	40	1.11
23634456--23634509	3	18.3	3	96	3	101	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23637104--23637128	2	12.5	2	100	0	50	48	0	0	52	1.00
23638515--23638570	29	1.9	29	92	0	94	35	12	8	42	1.74
23638516--23638587	29	2.4	29	83	2	90	40	12	8	38	1.73
23638766--23638821	29	1.9	29	88	0	85	41	8	14	35	1.77
23653396--23653460	6	10.8	6	98	0	121	16	49	0	33	1.47
23655202--23655266	3	21.7	3	100	0	130	66	0	0	33	0.92
23658513--23658603	45	2.0	44	95	2	164	31	9	26	31	1.89
23658970--23659027	21	2.8	20	75	17	64	58	13	18	8	1.61
23663222--23663255	4	8.5	4	93	0	59	26	2	23	47	1.66
23673721--23674089	184	2.0	184	94	0	639	36	20	11	31	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136