genome.fa.s10.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  45  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14926743--14926802	4	14.5	4	75	19	52	75	0	5	20	0.99
14926733--14926803	19	3.5	21	76	17	78	74	0	5	19	1.01
14935374--14935790	108	3.9	108	91	3	653	32	18	16	32	1.93
14936180--14936215	9	4.0	9	89	10	56	80	0	0	19	0.71
14936168--14936211	5	9.0	5	80	14	56	77	0	2	20	0.88
14936168--14936211	19	2.2	20	92	4	72	77	0	2	20	0.88
14936253--14936279	12	2.2	12	100	0	54	70	0	0	29	0.88
14937271--14937300	15	1.9	16	93	6	53	0	6	10	83	0.81
14939837--14939937	3	33.7	3	74	13	66	63	4	2	28	1.30
14942119--14942207	27	3.4	26	75	16	78	68	1	7	22	1.22
14942119--14942188	17	4.0	18	71	12	56	70	1	7	21	1.20
14942783--14942822	20	2.1	19	90	9	64	17	35	37	10	1.83
14949573--14949610	16	2.4	16	90	0	58	47	28	2	21	1.64
14958226--14958260	18	2.0	17	88	5	52	37	20	0	42	1.52
14960114--14960213	47	2.1	49	88	3	150	45	8	7	40	1.61
14960974--14961004	16	1.9	16	93	0	53	54	3	0	41	1.16
14965346--14965408	23	2.7	22	82	4	63	30	6	15	47	1.71
14965354--14965408	23	2.4	22	85	8	74	30	7	14	47	1.71
14976241--14976270	15	2.0	15	93	0	51	26	13	23	36	1.92
14982444--14982562	42	2.8	43	75	5	116	29	27	20	22	1.98
14988854--14988899	17	2.4	21	75	24	64	28	0	0	71	0.86
14988860--14988899	17	2.2	19	91	8	66	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14990071--14990120	26	1.9	26	91	0	82	22	10	8	60	1.55
14995640--14995760	62	2.0	59	80	7	136	40	2	7	49	1.44
14998676--14999063	125	3.1	126	80	5	448	27	14	17	40	1.89
14999154--14999259	34	3.1	34	82	6	135	46	17	0	35	1.49
14999160--14999257	33	3.0	32	81	4	115	41	19	0	38	1.51
14999888--14999925	19	2.0	20	94	5	69	44	0	0	55	0.99
14999889--14999930	19	2.2	19	87	8	59	45	0	2	52	1.13
15000643--15000709	35	1.9	35	93	0	116	22	7	19	50	1.72
15000962--15001015	21	2.3	24	78	12	60	42	11	5	40	1.64
15019617--15019673	29	2.0	28	83	10	71	42	5	5	47	1.48
15021870--15021914	16	2.8	16	86	0	63	8	24	33	33	1.86
15028692--15028748	28	2.0	29	83	10	73	54	1	1	42	1.21
15028710--15028740	15	2.0	16	93	6	55	51	0	3	45	1.17
15029940--15030067	45	2.9	44	89	1	193	42	14	21	21	1.87
15032764--15032806	21	2.0	21	90	4	68	48	0	16	34	1.46
15033230--15033271	22	2.0	21	86	9	59	42	2	14	40	1.58
15033327--15033616	93	3.1	92	83	4	311	39	6	14	39	1.72
15037423--15037493	22	3.1	22	76	15	72	49	1	2	46	1.25
15038152--15038177	3	8.7	3	100	0	52	34	0	65	0	0.93
15044523--15044547	1	25.0	1	100	0	50	0	0	0	100	0.00
15044692--15044754	33	1.9	33	96	0	117	28	14	17	39	1.89
15046292--15046327	1	36.0	1	100	0	72	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15047536--15047567	16	2.0	16	100	0	64	18	12	6	62	1.50
15050018--15050048	2	15.5	2	100	0	62	48	0	0	51	1.00
15051216--15051412	100	2.0	99	91	3	324	47	5	7	40	1.54
15051235--15051440	100	2.1	98	83	7	254	49	7	5	38	1.54
15056223--15056258	15	2.4	15	90	0	54	72	2	0	25	0.98
15058929--15058966	20	1.9	20	88	0	58	28	7	13	50	1.69
15058923--15058972	20	2.5	20	80	0	55	34	8	12	46	1.70
15060882--15060922	14	2.8	15	78	14	50	56	2	0	41	1.13
15061153--15061205	26	2.0	26	100	0	106	45	11	7	35	1.69
15064745--15064801	30	1.9	30	88	0	87	35	19	3	42	1.68
15064772--15064796	12	2.1	12	100	0	50	36	16	0	48	1.46
15066565--15066606	18	2.3	18	95	0	75	28	28	0	42	1.56
15067005--15067589	25	26.3	23	58	23	62	36	4	4	54	1.40
15067016--15067608	66	9.0	66	100	0	1186	36	4	4	54	1.41
15071104--15071372	126	2.1	126	88	0	394	29	16	16	37	1.90
15071428--15071535	34	3.2	33	79	5	110	43	14	0	40	1.52
15071587--15071657	21	3.4	21	64	0	61	46	26	1	25	1.61
15071575--15071657	42	2.1	39	82	12	100	45	27	2	24	1.65
15071648--15071686	15	2.6	15	91	0	60	53	35	0	10	1.35
15071590--15071668	42	1.9	42	94	2	142	45	29	1	24	1.61
15072151--15072314	88	1.9	89	84	7	228	34	18	10	36	1.85
15072676--15072822	10	15.3	9	68	18	66	65	2	1	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15072312--15072803	244	2.0	245	91	2	794	50	10	8	31	1.67
15073049--15073119	29	2.4	29	81	4	81	32	8	4	54	1.50
15073078--15073151	19	3.8	19	75	3	67	28	5	5	60	1.41
15073096--15073217	30	4.1	29	71	17	99	35	2	1	60	1.20
15073078--15073227	10	15.4	9	65	14	50	34	2	2	60	1.25
15081883--15081909	12	2.2	12	100	0	54	14	22	33	29	1.94
15087204--15087325	57	2.1	57	86	0	163	23	26	22	27	1.99
15087379--15087425	24	2.0	24	86	0	67	29	2	46	21	1.63
15087385--15087435	24	2.1	24	82	7	59	33	3	41	21	1.72
15087422--15087582	66	2.4	66	92	0	259	14	13	44	27	1.83
15087558--15087597	12	3.3	12	92	0	71	17	2	50	30	1.59
15088031--15088304	43	6.4	43	80	4	286	28	26	17	27	1.98
15088031--15088321	129	2.3	128	83	5	349	29	26	17	27	1.97
15088605--15088696	21	4.4	21	79	5	105	5	43	15	35	1.69
15097858--15098246	25	15.6	27	81	10	322	30	0	21	46	1.55
15097854--15098270	16	26.2	16	74	16	270	30	0	22	46	1.58
15097866--15098292	50	8.3	50	82	10	461	30	0	22	46	1.58
15097858--15098292	9	52.4	9	73	15	359	30	0	22	46	1.58
15098108--15098292	56	3.2	57	87	6	187	31	1	21	45	1.59
15098242--15098290	25	2.0	25	91	0	80	28	4	24	42	1.73
15099561--15099638	28	2.9	25	82	14	93	23	19	25	32	1.98
15099573--15099627	28	2.0	28	96	0	101	21	18	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15100275--15100326	26	1.9	28	84	7	72	21	11	11	55	1.66
15105281--15105390	29	3.8	29	82	2	132	36	15	20	27	1.93
15105281--15105390	57	1.9	58	83	1	141	36	15	20	27	1.93
15109633--15109660	14	2.0	14	100	0	56	35	42	0	21	1.53
15114048--15114446	127	3.2	126	89	2	611	27	17	19	36	1.93
15116960--15116986	2	13.5	2	100	0	54	48	0	0	51	1.00
15119192--15119221	15	1.9	16	93	6	53	36	0	0	63	0.95
15121456--15121489	18	1.9	18	88	5	52	29	0	5	64	1.17
15129843--15130479	322	2.0	322	95	0	1139	32	13	19	35	1.90
15131882--15131922	21	2.0	21	90	0	64	34	39	0	26	1.57
15144785--15144830	22	2.1	22	84	8	58	13	15	0	71	1.14
15145333--15145362	14	2.1	14	93	0	51	40	3	0	56	1.16
15148448--15148529	24	3.3	24	67	18	69	17	9	35	37	1.82
15148415--15148528	50	2.3	50	96	1	212	14	9	35	40	1.78
15153204--15153234	9	3.4	9	90	0	53	25	12	22	38	1.90
15154250--15154275	5	5.2	5	100	0	52	19	19	19	42	1.90
15154324--15154384	20	2.9	21	71	7	61	22	1	4	70	1.15
15155537--15155624	34	2.6	34	83	0	104	46	14	6	31	1.71
15157829--15157865	19	2.0	19	89	5	58	40	0	2	56	1.13
15157834--15157877	19	2.2	20	84	11	56	40	0	2	56	1.11
15164203--15164356	43	3.6	43	91	0	236	33	24	14	26	1.95
15172240--15172301	31	2.0	30	81	12	72	69	0	16	14	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15172241--15172299	17	3.8	15	76	19	59	71	0	15	13	1.15
15173555--15174297	129	5.8	129	92	0	1234	31	19	23	25	1.98
15175239--15175278	16	2.7	15	88	7	55	0	15	5	80	0.88
15176055--15176097	23	2.0	22	81	9	52	34	4	9	51	1.55
15179918--15179958	20	2.0	20	95	0	73	43	12	7	36	1.70
15184265--15184344	40	2.0	40	87	0	115	37	2	22	37	1.68
15185523--15185566	23	2.0	22	81	4	52	9	22	2	65	1.32
15188515--15188564	6	8.3	6	80	6	57	2	62	0	36	1.07
15188588--15188647	25	2.2	28	88	8	90	41	1	0	56	1.09
15215733--15215757	7	3.6	7	100	0	50	56	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136