genome.fa.s10.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  86  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28443835--28443869	11	3.2	11	91	0	52	25	2	8	62	1.38
28443840--28443870	11	2.8	11	95	0	53	22	0	9	67	1.19
28445007--28445137	37	3.3	37	68	19	111	58	0	4	35	1.24
28445035--28445159	37	3.2	36	66	28	92	59	1	5	33	1.30
28445001--28445169	82	2.0	83	98	1	331	60	1	4	33	1.25
28445004--28445123	10	12.8	10	71	24	84	60	0	3	35	1.19
28445022--28445155	26	4.9	27	72	17	107	58	1	5	35	1.30
28447510--28447539	16	1.9	15	93	6	51	56	0	13	30	1.37
28459752--28460001	124	2.0	125	99	0	493	40	17	18	24	1.91
28460374--28460507	68	2.0	68	98	0	259	17	22	16	44	1.87
28461576--28461610	12	2.9	12	95	0	61	25	42	17	14	1.86
28468917--28468964	21	2.3	21	88	0	69	33	18	14	33	1.91
28477789--28477821	2	16.5	2	100	0	66	0	51	0	48	1.00
28479291--28479388	50	2.0	50	97	0	187	23	8	14	54	1.67
28482470--28482531	23	2.5	25	80	15	67	45	3	8	43	1.49
28483693--28483746	27	2.0	27	100	0	108	14	3	18	62	1.46
28505726--28505776	23	2.3	23	89	3	77	64	9	3	21	1.40
28510208--28510273	29	2.2	29	82	12	73	46	10	15	27	1.78
28513719--28513995	46	6.0	46	98	0	509	27	27	8	36	1.86
28521593--28521653	16	3.9	16	73	14	56	13	1	24	60	1.42
28521589--28521655	15	4.4	14	74	18	53	13	1	25	59	1.43
28522338--28522391	25	2.2	25	86	0	72	57	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28525264--28525304	20	2.0	20	100	0	82	34	4	9	51	1.56
28535153--28535328	83	2.1	82	86	4	239	47	13	7	31	1.72
28538977--28539042	29	2.2	29	84	10	80	22	21	10	45	1.82
28539174--28539211	14	2.7	14	87	0	58	0	60	0	39	0.97
28539176--28539210	12	2.9	12	86	0	52	0	62	0	37	0.95
28552017--28552409	202	1.9	202	91	0	642	36	18	13	30	1.90
28559368--28559400	14	2.4	14	90	5	50	54	6	21	18	1.64
28581245--28581274	11	2.7	11	94	0	51	6	0	13	80	0.91
28583609--28583667	31	1.9	31	85	0	82	44	0	16	38	1.48
28606017--28606057	20	2.0	20	95	0	73	26	31	2	39	1.70
28608796--28608940	71	2.0	72	98	1	283	54	8	4	33	1.49
28610351--28610405	24	2.3	23	73	17	58	32	14	0	52	1.42
28610374--28610527	76	2.0	77	98	1	301	45	7	2	44	1.44
28614420--28614622	87	2.3	89	82	6	268	36	20	9	33	1.85
28615008--28615067	27	2.3	26	88	5	86	41	0	1	56	1.09
28615015--28615102	39	2.4	37	79	7	106	39	1	0	59	1.05
28615019--28615101	19	4.4	19	79	7	89	38	1	0	60	1.05
28616487--28616526	21	1.9	21	94	0	71	2	30	17	50	1.59
28618577--28618658	31	2.7	31	96	1	148	56	0	8	35	1.30
28618981--28619061	39	2.1	39	97	0	153	55	8	14	20	1.66
28620236--28620367	3	44.0	3	90	0	210	34	1	1	62	1.13
28625406--28625434	14	2.1	14	93	6	51	27	0	3	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28635694--28635725	3	10.7	3	100	0	64	34	31	0	34	1.58
28635936--28635967	17	1.9	16	93	6	55	0	9	0	90	0.45
28635940--28635966	11	2.5	11	100	0	54	0	7	0	92	0.38
28637332--28637358	6	4.5	6	100	0	54	0	0	62	37	0.95
28640311--28640340	16	1.9	15	93	6	51	50	0	6	43	1.28
28640403--28640439	19	1.9	19	94	0	65	62	5	2	29	1.31
28644864--28645031	51	3.3	51	69	11	164	40	5	3	50	1.44
28644855--28645079	101	2.2	102	96	3	409	40	5	2	50	1.40
28644962--28645078	59	2.0	60	81	1	137	41	5	2	50	1.40
28646985--28647101	59	2.0	60	81	1	137	41	5	2	50	1.40
28649371--28649443	29	2.7	28	75	10	71	39	8	8	43	1.64
28655501--28655540	20	1.9	20	90	10	62	37	0	0	62	0.95
28655504--28655563	23	2.8	20	76	16	50	35	0	5	60	1.19
28659875--28659958	37	2.2	39	85	4	109	32	22	10	34	1.89
28660401--28660451	18	2.8	18	84	0	66	27	5	29	37	1.80
28665283--28665334	16	3.2	16	71	15	52	48	9	3	38	1.54
28667410--28667946	181	3.0	181	95	0	966	32	22	9	35	1.87
28669121--28669150	15	2.0	15	100	0	60	40	6	13	40	1.71
28678275--28678314	19	2.1	19	100	0	80	25	17	25	32	1.97
28684586--28684664	32	2.5	31	79	4	86	37	3	8	49	1.52
28684749--28684779	16	1.9	16	93	0	53	12	3	9	74	1.19
28684961--28685007	23	2.0	25	87	8	71	59	6	4	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28685595--28685660	27	2.4	27	94	2	114	43	4	18	33	1.70
28688000--28688050	25	2.2	24	86	10	70	29	9	5	54	1.56
28694874--28694965	48	1.9	48	97	0	175	34	14	4	46	1.64
28706255--28706295	22	1.9	22	85	5	57	34	4	2	58	1.32
28726721--28726876	69	2.3	69	87	2	215	39	14	17	27	1.89
28726772--28726872	23	4.4	23	63	18	66	37	15	17	28	1.91
28726887--28726990	38	2.9	33	76	13	91	45	19	11	24	1.83
28727738--28727862	43	3.0	41	81	4	124	27	27	14	31	1.95
28731553--28731579	13	2.1	13	100	0	54	70	0	7	22	1.12
28735307--28735347	20	2.0	20	100	0	82	43	9	29	17	1.80
28739213--28739255	18	2.4	18	84	7	52	44	41	2	11	1.53
28739359--28739416	9	6.4	9	77	0	62	29	8	20	41	1.82
28742937--28743264	163	2.0	163	98	0	629	30	15	18	34	1.93
28749059--28749091	6	5.5	6	100	0	66	15	0	51	33	1.43
28749126--28749197	36	2.0	37	88	2	110	29	8	22	40	1.83
28768506--28768574	23	3.1	23	77	8	79	62	8	13	15	1.54
28768480--28768638	44	3.7	42	77	9	153	59	9	13	16	1.59
28768511--28768581	21	3.3	21	75	7	70	66	5	12	15	1.42
28769370--28769418	20	2.5	20	86	3	64	57	14	12	16	1.66
28769457--28769661	20	10.3	20	68	12	91	54	8	17	20	1.69
28769582--28769627	19	2.3	21	85	14	62	63	2	15	19	1.41
28769555--28769665	41	2.7	42	72	5	111	57	6	14	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28771259--28771463	20	10.3	20	68	12	91	54	8	17	20	1.69
28771384--28771429	19	2.3	21	85	14	62	63	2	15	19	1.41
28771357--28771467	41	2.7	42	72	5	111	57	6	14	21	1.59
28772890--28772927	3	13.3	3	83	10	53	28	2	0	68	1.03
28772890--28772927	17	2.2	17	95	0	67	28	2	0	68	1.03
28795458--28795500	21	2.0	23	81	9	54	32	16	20	30	1.95
28796903--28796944	22	2.0	22	86	9	61	45	35	4	14	1.66
28797123--28797188	6	10.5	6	82	8	60	77	13	6	3	1.08
28805315--28805393	24	3.3	24	79	10	81	16	40	3	39	1.67
28805342--28805404	24	2.6	25	80	5	67	15	36	3	44	1.63
28807436--28807474	9	4.1	9	81	12	51	43	0	33	23	1.54
28807440--28807477	20	1.9	20	100	0	76	39	0	36	23	1.55
28809421--28809716	108	2.8	108	85	2	364	26	10	8	54	1.63
28810692--28810742	25	2.0	25	85	11	68	43	1	1	52	1.23
28815234--28815267	8	4.0	8	85	14	50	2	14	0	82	0.79
28831569--28831625	26	2.2	26	84	6	71	21	10	31	36	1.87
28831959--28832031	36	2.0	36	97	0	137	24	23	36	15	1.93
28837590--28837744	82	1.9	82	100	0	310	36	10	10	41	1.76
28839389--28839414	2	13.0	2	100	0	52	50	0	0	50	1.00
28839414--28839483	2	35.0	2	97	0	131	1	0	48	50	1.09
28840195--28840341	57	2.5	57	80	8	161	33	21	22	22	1.97
28840425--28840545	54	2.2	54	83	2	145	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28840449--28840563	54	2.1	54	90	1	187	31	13	24	31	1.93
28850552--28850580	3	9.7	3	100	0	58	34	0	31	34	1.58
28851774--28851827	28	1.9	28	82	14	67	64	20	9	5	1.42
28859145--28859500	121	2.9	121	86	3	493	38	16	10	34	1.83
28859905--28859986	40	2.0	42	86	9	116	26	21	29	21	1.99
28860566--28860811	96	2.8	83	78	16	278	39	17	1	42	1.57
28860611--28860768	48	3.3	47	66	20	123	37	17	1	43	1.58
28860623--28860870	96	2.6	93	86	5	352	39	18	2	39	1.63
28864741--28864786	3	15.7	3	78	13	51	28	2	4	65	1.23
28865133--28865345	107	2.0	107	86	3	295	32	16	16	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136