genome.fa.s10.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  100  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33718776--33718818	16	2.7	16	100	0	86	11	23	16	48	1.78
33722572--33722612	19	2.2	19	86	8	57	46	12	21	19	1.82
33725206--33725313	27	4.0	26	83	5	126	37	21	22	19	1.95
33725208--33725314	54	2.0	53	85	1	142	37	19	22	20	1.94
33725472--33725535	22	2.9	22	79	9	76	31	23	25	20	1.98
33725926--33725984	27	2.2	27	81	6	66	30	16	13	38	1.88
33726004--33726227	27	8.3	27	82	6	188	29	9	21	39	1.86
33726022--33726227	81	2.5	81	80	4	211	28	9	22	39	1.86
33726033--33726253	54	4.1	54	82	2	158	29	10	20	38	1.87
33726104--33726253	81	1.9	81	82	2	194	30	10	21	38	1.86
33729102--33729142	19	2.2	19	86	8	57	46	12	21	19	1.82
33731810--33731859	25	2.0	25	88	3	75	30	20	20	30	1.97
33731817--33731886	25	2.8	25	84	0	86	24	24	25	25	2.00
33732090--33732172	27	3.1	27	92	0	130	27	22	16	32	1.96
33732157--33732338	27	6.8	28	78	6	162	30	9	20	39	1.84
33732213--33732406	81	2.4	81	78	3	176	32	6	22	38	1.80
33732330--33732646	54	5.9	54	83	3	282	40	8	20	30	1.82
33732347--33732621	27	10.2	27	90	0	381	41	9	20	29	1.83
33734345--33734488	27	5.3	27	79	3	155	29	23	6	40	1.79
33734357--33734488	54	2.4	54	88	0	201	31	22	6	40	1.78
33734478--33734614	53	2.6	52	80	6	150	37	21	10	29	1.88
33734520--33734691	27	6.4	27	74	12	140	41	19	8	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33734492--33734674	80	2.3	81	76	11	180	41	19	8	30	1.82
33734730--33734790	27	2.3	27	80	5	70	36	18	24	21	1.95
33735495--33735587	9	9.4	10	68	17	52	41	9	18	30	1.82
33735502--33735587	20	4.3	21	89	5	126	41	10	18	29	1.84
33735513--33735587	11	7.4	11	67	17	54	42	10	18	28	1.83
33735638--33735773	52	2.7	51	92	5	215	28	21	22	27	1.99
33735638--33735773	26	5.3	26	86	3	181	28	21	22	27	1.99
33736021--33736135	31	3.7	31	96	1	205	28	17	26	26	1.98
33738589--33738658	25	2.8	25	91	0	104	25	22	24	27	2.00
33738811--33739001	27	7.1	26	87	3	193	27	19	17	34	1.95
33738809--33738996	81	2.3	80	87	1	259	27	20	18	34	1.96
33738986--33739194	27	7.8	27	78	4	190	30	9	20	40	1.83
33739017--33739208	54	3.6	54	86	0	240	29	9	21	39	1.85
33738989--33739208	81	2.7	81	80	2	237	30	8	21	39	1.83
33739186--33739397	27	7.9	27	92	0	316	40	8	22	29	1.82
33739069--33739416	27	12.9	27	85	3	234	35	8	21	33	1.84
33740982--33741026	16	2.6	18	86	6	58	53	2	6	37	1.40
33742580--33742750	93	1.8	93	93	0	297	28	28	21	22	1.99
33742572--33742747	46	3.8	46	76	12	198	29	27	20	22	1.98
33745868--33745926	25	2.5	24	81	13	68	38	11	5	44	1.63
33747046--33747110	34	1.9	34	90	0	103	46	20	12	21	1.83
33748926--33749269	29	11.7	30	79	7	237	23	25	11	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33748926--33749269	58	5.9	58	75	4	287	23	25	11	39	1.89
33748928--33749270	87	3.9	86	77	3	310	23	25	11	39	1.89
33748926--33749261	116	2.9	115	79	6	331	23	25	11	39	1.88
33752708--33752884	27	6.5	27	79	3	113	28	31	15	24	1.96
33752708--33752884	54	3.3	55	80	7	191	28	31	15	24	1.96
33752729--33752884	82	1.9	81	82	3	197	27	30	16	25	1.96
33755616--33755658	21	2.2	19	83	8	50	72	4	9	13	1.26
33764607--33764972	50	7.4	50	93	5	624	29	28	8	33	1.87
33772803--33772847	21	2.1	21	83	0	54	51	8	11	28	1.68
33789104--33789205	29	3.5	29	89	5	127	28	28	12	30	1.93
33789071--33789205	58	2.3	57	83	8	175	25	31	14	28	1.94
33789264--33789297	18	1.9	18	88	5	52	20	38	23	17	1.93
33789412--33789454	8	5.4	8	85	0	50	6	23	20	48	1.73
33790741--33790827	44	2.0	44	97	0	165	29	9	17	43	1.80
33790744--33790815	22	3.3	22	68	14	67	27	11	16	44	1.82
33809772--33809796	5	5.0	5	100	0	50	20	0	0	80	0.72
33817143--33817350	39	5.3	39	89	2	303	19	22	27	30	1.98
33842501--33842541	21	2.0	21	85	4	57	46	26	2	24	1.65
33843445--33843659	39	5.5	39	90	2	335	45	20	2	30	1.66
33843442--33843497	17	2.8	22	66	25	59	44	17	3	33	1.66
33843445--33843659	77	2.8	78	89	2	335	45	20	2	30	1.66
33843448--33843659	116	1.8	117	90	3	347	45	21	2	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33845985--33846197	27	7.9	27	79	12	224	34	22	23	19	1.96
33846020--33846197	54	3.3	54	97	0	329	34	24	24	17	1.96
33846303--33846365	26	2.3	26	83	5	72	30	11	25	33	1.90
33847801--33847882	26	3.2	26	92	0	146	36	25	7	30	1.83
33851263--33851367	51	2.1	51	94	0	183	28	23	16	31	1.96
33864586--33864742	43	3.7	41	79	10	181	28	27	19	24	1.98
33864586--33864745	86	1.9	86	86	2	232	28	27	19	24	1.98
33870157--33870192	16	2.3	15	86	9	54	77	8	5	8	1.11
33892254--33892313	26	2.3	26	91	0	93	28	15	15	41	1.86
33892459--33892499	12	3.4	12	86	0	55	19	21	0	58	1.39
33897369--33897399	6	5.2	6	100	0	62	0	16	0	83	0.64
33908742--33908780	5	8.0	5	83	16	55	82	0	17	0	0.68
33908734--33908780	21	2.2	21	85	7	60	80	0	19	0	0.70
33908749--33908780	11	3.0	11	95	4	57	81	0	18	0	0.70
33912064--33912115	3	17.3	3	100	0	104	32	0	0	67	0.91
33914450--33914506	11	5.2	10	76	17	51	52	1	22	22	1.56
33914450--33914506	5	10.4	5	76	16	51	52	1	22	22	1.56
33916198--33916222	9	2.8	9	100	0	50	60	0	0	40	0.97
33917100--33917236	57	2.4	58	85	3	179	29	18	18	34	1.94
33923401--33923506	53	2.0	53	94	0	185	31	13	31	24	1.93
33925378--33925471	21	4.5	21	85	4	109	35	18	29	17	1.93
33925378--33925471	42	2.2	42	88	3	136	35	18	29	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33927199--33927287	46	2.0	45	88	4	135	33	13	24	28	1.93
33927201--33927306	44	2.4	45	83	3	124	35	14	21	28	1.92
33931360--33931522	55	3.0	55	86	0	191	28	8	13	49	1.71
33937014--33937051	19	2.0	20	85	15	53	36	0	23	39	1.55
33939213--33939280	34	2.0	34	97	0	127	25	22	29	23	1.99
33944184--33944303	46	2.6	46	100	0	240	20	20	28	30	1.97
33944621--33944750	71	1.9	70	82	7	167	33	16	30	20	1.95
33953918--33954008	45	2.0	45	97	0	173	47	13	14	25	1.80
33956233--33956294	17	3.5	17	80	6	70	12	17	1	67	1.30
33956235--33956318	17	4.4	19	77	15	68	13	19	1	66	1.31
33956264--33956332	21	3.5	20	77	16	63	11	20	0	68	1.20
33957228--33957263	18	1.9	18	88	5	54	33	8	0	58	1.28
33960451--33960522	33	2.2	33	84	0	99	25	20	25	29	1.99
33961582--33961625	20	2.1	21	83	4	54	50	20	4	25	1.67
33963441--33963496	27	2.1	27	93	0	94	28	8	30	32	1.88
33963992--33964055	27	2.4	27	89	0	101	34	18	20	26	1.96
33971097--33971380	141	2.0	142	97	1	543	29	10	19	41	1.84
33971926--33972202	48	5.8	48	74	11	237	26	20	25	26	1.99
33974346--33974415	26	2.7	26	90	2	113	41	2	7	48	1.45
33977293--33977343	24	2.1	24	96	0	93	72	7	9	9	1.28
33978199--33978245	24	2.0	24	95	0	85	25	14	34	25	1.94
33978223--33978446	43	5.3	43	78	4	258	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33978223--33978471	84	3.0	84	92	0	408	25	16	25	32	1.96
33978223--33978474	43	6.0	41	78	4	252	25	16	26	32	1.96
33982196--33982513	46	6.7	48	76	12	223	23	28	19	28	1.98
33982199--33982470	46	5.7	47	76	10	245	22	29	19	27	1.98
33982199--33982467	138	1.9	145	84	6	374	23	29	19	27	1.98
33982197--33982515	94	3.4	97	79	10	324	23	28	19	28	1.98
33984163--33984256	47	2.0	46	81	2	107	23	20	24	30	1.98
34006163--34006252	45	2.0	45	97	0	171	15	22	41	21	1.90
34006346--34006390	20	2.2	20	88	0	63	22	31	17	28	1.97
34009978--34010064	30	2.9	30	75	3	95	27	16	27	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172