genome.fa.s10.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  133  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44014003--44014230	95	2.4	95	83	4	264	31	17	21	29	1.96
44014168--44014306	43	3.2	43	75	7	136	30	16	22	30	1.96
44015881--44015909	15	1.9	15	100	0	58	27	6	3	62	1.37
44015886--44015924	21	1.9	20	89	5	60	25	7	2	64	1.33
44015916--44016098	3	59.3	3	67	10	84	28	8	2	60	1.37
44015992--44016093	13	7.5	14	71	16	54	25	8	1	63	1.34
44016727--44016822	39	2.4	39	77	1	111	37	20	22	18	1.94
44016858--44017009	41	3.8	40	84	5	198	21	23	26	28	1.99
44016858--44017007	82	1.8	81	88	4	230	22	22	26	28	1.99
44017418--44017485	20	3.3	19	75	17	57	17	1	42	38	1.59
44017542--44017593	7	7.6	7	91	4	79	13	0	51	34	1.41
44017542--44017601	14	4.4	14	85	2	68	16	0	50	33	1.46
44020152--44020178	5	5.4	5	100	0	54	62	0	0	37	0.95
44020344--44020407	22	3.0	21	79	6	65	21	1	7	68	1.23
44023792--44023835	23	2.0	22	86	4	61	31	0	13	54	1.39
44023992--44024169	43	4.2	43	87	1	232	28	16	29	25	1.97
44024017--44024169	43	3.6	43	90	1	236	25	16	31	26	1.97
44024270--44024360	43	2.1	42	86	6	121	24	19	28	27	1.99
44025716--44025763	22	2.2	22	88	7	71	22	2	6	68	1.23
44028909--44028941	14	2.2	16	89	10	52	39	0	6	54	1.25
44029076--44029131	27	2.1	26	81	15	62	64	3	1	30	1.21
44034404--44034511	26	4.2	26	90	0	171	33	8	23	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44041053--44041161	26	4.2	26	91	0	182	33	6	23	36	1.81
44042949--44043368	137	3.1	137	96	0	761	25	17	24	32	1.97
44045298--44045332	18	1.9	18	94	0	61	40	14	14	31	1.86
44045302--44045348	18	2.6	18	80	6	51	40	19	12	27	1.88
44059302--44059327	12	2.2	12	100	0	52	30	0	7	61	1.24
44059284--44059339	20	2.7	22	80	17	59	32	0	5	62	1.18
44059377--44059405	12	2.4	12	100	0	58	44	0	0	55	0.99
44061723--44061762	21	1.9	21	89	0	62	45	7	10	37	1.66
44063946--44064000	25	2.3	23	78	12	58	43	3	16	36	1.65
44064056--44064130	22	3.3	22	75	10	69	60	5	5	29	1.41
44064062--44064124	25	2.5	24	84	7	72	58	6	4	30	1.43
44064147--44064278	23	5.6	24	72	8	92	55	2	6	36	1.37
44064075--44064184	29	4.0	28	73	15	97	58	4	6	30	1.43
44064143--44064202	25	2.4	25	80	0	75	55	1	5	38	1.32
44064227--44064278	24	2.2	23	83	10	61	59	0	3	36	1.16
44064561--44064599	16	2.4	16	86	0	51	43	28	5	23	1.75
44064757--44064855	30	3.3	30	94	0	180	17	6	50	26	1.69
44065491--44065696	87	2.4	87	84	4	245	35	19	14	30	1.92
44065545--44066070	91	5.7	96	77	14	377	36	18	16	27	1.93
44065735--44066090	91	3.9	88	82	6	387	36	18	17	27	1.93
44065893--44065925	14	2.4	14	94	0	57	63	6	12	18	1.48
44065737--44066069	182	1.8	178	85	5	463	35	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44066003--44066823	75	11.2	75	85	4	1016	33	20	15	30	1.94
44066018--44066823	146	5.5	146	91	2	1185	32	20	15	30	1.94
44066994--44067038	13	3.4	13	84	6	63	68	4	11	15	1.34
44066822--44067111	100	2.9	102	85	4	376	38	17	17	25	1.92
44067007--44067182	90	2.0	87	84	3	226	37	20	17	24	1.94
44068057--44068094	17	2.3	16	86	8	58	0	15	0	84	0.63
44074174--44074203	14	2.1	14	93	0	51	46	10	13	30	1.75
44081055--44081090	2	18.0	2	88	0	54	44	0	5	50	1.25
44082643--44082936	130	2.3	131	87	4	420	36	16	17	30	1.91
44084030--44084056	14	1.9	14	100	0	54	51	3	7	37	1.48
44094933--44095046	3	36.0	3	73	11	61	64	2	6	27	1.31
44095208--44095387	3	59.7	3	74	10	145	58	0	7	33	1.30
44095357--44095407	22	2.3	22	79	0	57	58	1	7	31	1.37
44095450--44095492	12	3.5	12	78	6	50	65	0	6	27	1.18
44096040--44096462	182	2.3	182	87	3	611	28	20	18	32	1.96
44096215--44097253	45	23.4	45	66	7	309	27	24	18	28	1.98
44096390--44097349	132	7.3	132	93	0	1505	28	25	19	27	1.98
44097943--44097980	15	2.5	15	100	0	76	26	31	13	28	1.93
44104388--44104445	30	1.9	30	85	0	80	29	24	6	39	1.81
44107426--44107470	19	2.4	19	88	7	65	48	6	20	24	1.73
44108890--44108941	25	2.1	25	85	3	70	26	19	21	32	1.97
44108997--44109049	11	5.0	11	79	6	65	30	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44108989--44109049	21	2.9	21	85	4	88	32	19	11	36	1.88
44108989--44109049	10	5.9	10	77	11	61	32	19	11	36	1.88
44115988--44116158	86	2.0	86	98	0	333	33	12	21	32	1.91
44116857--44116917	21	2.9	21	85	4	88	32	19	11	36	1.88
44116857--44116917	10	5.9	10	77	11	61	32	19	11	36	1.88
44116954--44117003	25	2.0	26	88	4	75	26	12	24	38	1.90
44117186--44117284	33	3.0	33	89	2	155	39	21	10	29	1.86
44117192--44117288	32	3.0	32	90	1	149	38	19	11	30	1.87
44122107--44122160	22	2.6	21	80	13	58	53	3	11	31	1.53
44122217--44122276	24	2.5	24	81	2	77	61	6	5	26	1.42
44122131--44122268	3	46.3	3	66	17	65	60	4	6	28	1.41
44125761--44125892	66	2.0	66	98	0	255	30	28	27	14	1.95
44126061--44126175	60	2.0	59	83	10	148	40	3	6	50	1.44
44128304--44128417	51	2.2	51	92	0	183	35	14	21	28	1.93
44131212--44131252	20	2.0	20	95	0	73	41	17	12	29	1.85
44132961--44132996	18	2.0	18	94	0	63	30	16	8	44	1.77
44139675--44139707	17	1.9	17	93	0	57	24	18	18	39	1.92
44143666--44143716	21	2.3	21	83	12	59	49	13	3	33	1.61
44147625--44147801	67	2.7	66	81	8	173	31	16	29	22	1.95
44153890--44153928	20	2.0	20	94	0	69	56	2	10	30	1.46
44163832--44163907	40	1.9	40	88	0	116	47	11	3	36	1.59
44166388--44166421	15	2.1	17	89	10	54	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44166419--44166492	29	2.6	29	97	0	139	48	2	0	48	1.15
44166917--44166941	13	1.9	13	100	0	50	56	0	4	40	1.18
44168760--44168807	21	2.3	21	89	7	71	66	2	0	31	1.03
44168759--44168811	22	2.5	22	81	9	65	67	1	0	30	1.01
44168785--44168828	14	2.8	16	80	16	56	65	0	2	31	1.05
44176708--44176788	40	2.0	40	90	0	126	53	13	3	29	1.57
44176824--44176864	19	2.2	19	90	0	64	43	14	4	36	1.67
44178998--44179091	47	2.0	47	87	4	136	30	11	21	36	1.89
44179041--44179167	60	2.1	61	94	1	220	29	14	22	33	1.94
44180645--44180737	18	5.2	18	90	0	150	27	24	16	31	1.96
44188521--44188555	12	2.9	12	95	0	61	48	14	0	37	1.44
44200431--44200473	15	2.7	16	82	10	52	58	4	0	37	1.19
44213485--44213568	31	2.8	31	78	10	84	22	13	9	54	1.67
44216104--44216146	23	1.9	22	95	4	77	37	11	9	41	1.74
44222471--44222582	43	2.6	42	79	8	111	33	27	16	23	1.95
44231647--44231779	42	3.1	43	78	6	135	24	15	27	32	1.96
44233908--44233998	35	2.6	35	79	6	105	29	8	18	42	1.80
44238668--44238831	59	2.7	59	78	9	136	26	13	14	46	1.81
44239277--44239350	30	2.4	31	86	2	96	54	13	5	27	1.61
44249187--44249236	23	2.2	23	81	0	55	32	8	4	56	1.47
44249416--44249456	22	1.9	21	85	5	55	26	7	0	65	1.18
44249421--44249456	18	2.1	16	90	10	54	27	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44255967--44256227	133	2.0	133	87	1	380	31	17	21	29	1.96
44256178--44256268	44	2.1	44	80	0	101	31	18	21	27	1.97
44256065--44256580	177	2.9	176	85	2	737	31	19	21	27	1.97
44256376--44256920	44	12.3	45	68	7	157	32	20	20	27	1.97
44256376--44256713	133	2.5	133	85	1	374	32	20	20	26	1.97
44256242--44257190	310	3.1	309	85	1	1292	31	19	20	28	1.97
44256065--44256826	177	4.3	177	80	5	625	32	19	20	27	1.97
44256417--44256783	133	2.8	132	82	4	434	31	20	20	27	1.97
44256707--44257024	133	2.4	133	81	4	347	31	18	22	27	1.97
44256550--44256891	177	1.9	177	88	1	515	31	19	21	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172