genome.fa.s10.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  29  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9017916--9017948	14	2.4	14	94	0	57	45	6	9	39	1.61
9020270--9020345	38	2.0	39	86	2	109	26	13	21	39	1.89
9027094--9027150	24	2.3	25	90	6	89	31	1	3	63	1.22
9027264--9027299	16	2.2	16	90	0	54	22	2	2	72	1.11
9028679--9028740	18	3.4	17	74	24	54	14	0	8	77	0.98
9036543--9036594	24	2.0	27	85	14	74	46	13	5	34	1.67
9042295--9042469	40	4.3	40	75	9	133	26	14	25	33	1.95
9042315--9042465	81	1.9	82	84	6	209	27	14	25	32	1.95
9044648--9044795	48	3.1	48	86	0	197	28	23	20	27	1.99
9053298--9053324	10	2.7	10	100	0	54	18	11	0	70	1.16
9055550--9055650	51	2.0	50	88	0	139	35	15	12	34	1.86
9060642--9060700	29	2.0	29	90	0	91	37	33	6	22	1.80
9062853--9063182	161	2.0	162	94	0	581	26	10	19	44	1.82
9067602--9067659	15	3.8	15	78	15	57	44	1	8	44	1.44
9069582--9069675	49	1.9	49	88	0	143	20	29	28	21	1.98
9070786--9070933	48	3.1	48	88	1	199	29	16	16	37	1.92
9073309--9073459	43	3.5	44	81	8	193	28	13	23	34	1.93
9083515--9083606	40	2.3	40	87	7	125	27	17	29	26	1.97
9085228--9085295	20	3.3	20	68	11	66	45	5	13	35	1.67
9085220--9085298	41	1.9	41	97	0	149	48	6	11	34	1.65
9089780--9089811	14	2.1	16	88	11	50	50	6	6	37	1.53
9090107--9090160	28	1.9	27	85	7	72	59	3	3	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9093169--9093202	17	1.9	18	88	5	52	44	29	0	26	1.55
9094099--9094124	5	5.2	5	100	0	52	38	19	0	42	1.51
9094399--9094440	21	1.9	23	90	9	70	40	11	2	45	1.54
9101125--9101220	48	2.0	48	82	8	115	21	18	21	37	1.94
9107127--9107171	23	1.9	24	90	4	74	28	51	0	20	1.48
9112829--9113006	57	3.1	57	71	19	199	37	3	7	51	1.48
9112843--9113025	55	3.3	54	72	19	194	39	3	7	49	1.48
9112777--9113024	113	2.2	113	99	0	487	39	3	7	49	1.47
9112850--9113037	56	3.3	58	68	21	178	38	3	7	49	1.50
9114883--9114912	8	3.8	8	90	0	51	53	20	23	3	1.60
9115540--9115680	60	2.4	59	85	7	178	26	20	26	26	1.99
9128620--9129072	47	9.6	47	91	1	699	29	29	8	32	1.87
9128620--9129072	96	4.8	96	93	1	711	29	29	8	32	1.87
9128620--9129072	143	3.2	141	91	1	699	29	29	8	32	1.87
9132899--9132933	14	2.5	14	95	0	61	45	11	8	34	1.71
9133206--9133236	6	5.2	6	92	0	53	3	0	12	83	0.75
9145307--9145460	11	13.3	11	67	18	57	33	3	2	60	1.29
9145360--9145427	25	2.8	25	88	2	93	33	1	0	64	1.02
9145350--9145485	11	10.4	13	68	21	56	31	2	3	61	1.28
9145468--9145492	12	2.1	12	100	0	50	32	8	0	60	1.26
9145607--9145720	43	2.8	40	75	9	95	35	4	0	58	1.24
9151011--9151053	20	2.2	20	91	0	68	27	13	9	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9151391--9151428	20	1.9	20	94	0	67	21	10	31	36	1.87
9151478--9151576	35	2.9	35	82	7	96	25	9	26	39	1.85
9151504--9151576	35	2.1	34	87	7	103	28	10	23	36	1.89
9152990--9153114	62	2.0	62	95	0	223	33	18	8	39	1.82
9153237--9153535	149	2.0	148	96	0	553	50	8	10	31	1.65
9154451--9154738	96	3.0	96	99	0	567	41	14	18	25	1.89
9155377--9155443	31	2.2	31	89	5	100	29	16	14	38	1.89
9170715--9170766	24	2.2	23	82	3	59	65	1	0	32	1.04
9171166--9171248	10	8.6	10	71	14	50	65	0	6	28	1.17
9171166--9171282	9	12.2	9	69	19	51	61	1	5	30	1.30
9171741--9171826	20	4.2	20	76	14	86	32	1	3	62	1.19
9171792--9171856	20	3.3	19	75	12	69	35	1	0	63	1.04
9171792--9171866	20	3.8	20	78	5	55	33	2	1	62	1.17
9172152--9172206	21	2.7	19	76	15	56	23	5	1	69	1.19
9174657--9174697	22	1.9	22	90	5	66	46	7	2	43	1.44
9185873--9185955	42	2.0	42	85	0	112	15	30	26	27	1.96
9185812--9186046	104	2.3	105	82	3	305	21	29	24	24	1.99
9187206--9187252	21	2.2	22	92	3	78	10	8	19	61	1.53
9187206--9187263	21	2.7	22	84	7	75	15	8	17	58	1.61
9188136--9188161	9	2.9	9	100	0	52	34	0	0	65	0.93
9191533--9191565	16	2.1	16	94	0	57	81	3	0	15	0.80
9192369--9192702	131	2.5	131	91	0	533	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9192638--9192748	46	2.4	46	93	0	186	24	19	21	34	1.97
9192813--9193060	44	5.7	44	69	12	161	27	22	20	29	1.98
9192500--9193109	175	3.5	175	93	0	950	27	21	19	31	1.97
9205393--9205425	16	2.1	16	94	0	57	81	3	0	15	0.80
9206589--9206643	18	3.1	18	86	0	74	49	18	7	25	1.73
9209990--9210046	18	3.3	18	80	7	66	21	45	10	22	1.82
9210932--9210986	18	3.1	18	86	0	74	49	18	7	25	1.73
9213948--9213977	11	2.7	11	94	0	51	56	10	16	16	1.66
9217210--9217403	41	4.7	40	76	13	173	21	17	24	37	1.94
9217210--9217403	82	2.4	83	84	7	236	21	17	24	37	1.94
9218332--9218404	7	9.9	7	71	11	56	21	0	45	32	1.53
9218339--9218397	15	3.9	15	86	4	82	23	0	42	33	1.55
9219015--9219057	18	2.3	18	84	11	52	76	0	4	18	0.95
9220531--9220753	40	5.6	40	85	0	275	26	26	21	25	2.00
9220531--9220747	120	1.8	120	86	0	317	26	26	21	25	2.00
9222127--9222266	47	2.9	49	84	6	189	27	31	8	32	1.87
9223741--9223798	22	2.6	21	86	5	71	37	36	0	25	1.57
9223760--9223807	15	3.4	14	77	8	53	33	37	0	29	1.58
9223757--9223815	29	2.1	28	87	9	84	33	38	0	27	1.57
9224328--9224369	20	2.1	20	100	0	84	47	23	14	14	1.80
9224620--9224684	32	2.0	32	96	0	121	32	12	13	41	1.82
9227325--9227476	77	2.0	77	100	0	304	38	11	16	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9229775--9229867	18	5.2	18	88	0	141	29	22	15	33	1.94
9242582--9242620	20	2.0	20	85	10	53	25	2	5	66	1.25
9243958--9243985	14	2.0	14	100	0	56	57	0	0	42	0.99
9243951--9243988	18	2.2	17	90	4	58	57	0	0	42	0.98
9245362--9245408	22	2.1	23	88	4	69	27	0	4	68	1.08
9246739--9246915	47	3.8	47	82	4	182	19	17	30	32	1.95
9254458--9254584	44	2.8	45	80	3	148	19	17	32	30	1.95
9254508--9254609	47	2.2	48	78	8	111	19	18	30	31	1.96
9262390--9262426	18	2.2	18	90	9	60	5	5	32	56	1.45
9267638--9267672	18	1.9	18	88	0	52	68	2	0	28	1.04
9270092--9270939	144	5.9	144	97	0	1482	28	22	15	32	1.95
9271608--9271716	54	2.0	55	94	1	193	32	19	12	35	1.89
9276066--9276107	11	3.8	11	93	0	66	16	47	4	30	1.67
9276657--9276725	18	3.8	18	80	0	66	28	23	14	33	1.94
9280767--9280809	11	4.0	11	84	6	61	18	46	6	27	1.75
9285863--9285899	18	2.1	18	94	0	65	27	8	21	43	1.80
9286681--9286721	19	2.2	19	86	4	57	36	12	0	51	1.40
9291678--9291772	47	2.0	47	95	0	172	37	20	14	27	1.91
9293434--9293465	14	2.3	14	100	0	64	6	15	46	31	1.71
9308075--9308233	54	2.9	54	80	0	192	30	15	27	26	1.96
9308374--9308429	29	1.9	29	85	0	76	25	7	19	48	1.74
9308364--9308439	29	2.6	29	78	4	71	26	9	19	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9311346--9311379	18	1.9	17	88	5	50	38	23	0	38	1.55
9313036--9313109	29	2.6	29	86	4	96	25	31	16	27	1.96
9329338--9329437	49	2.0	49	98	0	191	34	17	18	31	1.93
9329343--9329422	25	3.2	25	63	16	67	32	17	16	33	1.92
9330217--9330340	62	2.0	62	100	0	248	45	12	3	38	1.59
9331198--9331269	29	2.5	28	77	6	72	43	0	8	48	1.33
9331329--9331357	13	2.2	13	100	0	58	55	6	0	37	1.27
9332020--9332072	20	2.9	17	79	17	61	28	3	1	66	1.20
9336581--9336619	18	2.2	18	95	0	69	28	15	20	35	1.93
9339639--9339667	12	2.4	12	100	0	58	48	17	10	24	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172