genome.fa.s10.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  38  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11865786--11865829	13	3.2	13	78	12	52	2	13	4	79	0.98
11869556--11869662	53	2.0	53	94	0	187	28	16	24	30	1.97
11877175--11877300	44	2.8	45	84	2	146	34	28	15	22	1.94
11877194--11877350	45	3.5	45	79	2	147	34	28	14	22	1.94
11884854--11884949	49	2.0	48	91	0	147	31	4	37	26	1.75
11897424--11897601	27	6.6	27	83	3	205	26	15	28	29	1.96
11897425--11897580	82	1.9	81	88	3	233	26	15	28	29	1.96
11897421--11897601	82	2.2	81	83	2	229	27	15	27	29	1.96
11902297--11902326	15	2.0	15	100	0	60	26	6	0	66	1.16
11911362--11911455	47	2.0	47	95	0	170	35	21	12	30	1.91
11918671--11918715	22	2.0	22	95	0	81	22	11	17	48	1.78
11918908--11918948	19	2.2	18	86	4	55	43	14	0	41	1.45
11920945--11920983	21	1.9	20	84	5	51	51	23	2	23	1.61
11922496--11922586	26	3.3	26	83	6	101	38	10	21	28	1.88
11931444--11931507	32	2.0	32	100	0	128	43	15	9	31	1.78
11936415--11936452	15	2.5	15	95	4	67	81	0	18	0	0.69
11937984--11938220	48	4.9	50	80	9	258	26	26	18	28	1.98
11937982--11938215	96	2.4	96	81	8	289	25	26	18	29	1.98
11940109--11940148	5	7.8	5	85	2	53	37	0	20	42	1.52
11943865--11943945	41	2.0	40	83	13	103	20	20	43	14	1.88
11944065--11944103	21	1.9	21	94	5	71	10	35	30	23	1.88
11947069--11947099	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11947066--11947105	20	2.0	20	85	0	53	37	22	0	40	1.54
11947291--11947545	55	4.8	53	80	9	245	21	25	17	36	1.95
11947338--11947538	108	1.8	110	90	4	327	22	25	17	34	1.96
11950276--11950433	42	3.7	42	81	2	165	34	23	10	31	1.89
11950276--11950431	85	1.8	84	83	1	204	33	23	10	32	1.89
11958622--11958646	6	4.2	6	100	0	50	80	0	0	20	0.72
11962770--11962863	40	2.4	39	85	1	116	18	17	23	41	1.90
11963500--11963530	16	1.9	16	93	0	53	51	0	29	19	1.47
11964413--11964544	43	3.1	43	92	0	219	12	22	33	31	1.92
11971142--11971313	38	4.5	38	81	5	177	20	20	27	31	1.98
11971154--11971342	76	2.4	77	82	5	211	20	20	26	31	1.98
11975216--11975251	17	2.2	17	95	5	65	25	8	0	66	1.19
11975218--11975268	17	3.1	17	86	13	63	27	9	0	62	1.26
11976224--11976276	27	2.0	26	86	13	74	22	11	13	52	1.71
11979581--11979621	21	2.0	21	85	4	57	39	4	2	53	1.35
11986003--11986051	24	2.0	24	96	0	89	48	16	4	30	1.64
11988109--11988286	27	6.6	27	84	3	205	29	28	15	26	1.96
11988130--11988285	82	1.9	81	88	3	233	29	28	15	26	1.96
12018316--12018371	27	2.1	27	96	0	103	60	7	12	19	1.55
12023811--12023865	28	2.0	28	96	0	101	38	12	18	30	1.88
12032219--12032394	27	6.5	26	84	2	163	27	15	27	30	1.96
12032217--12032394	54	3.3	54	79	7	191	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12032218--12032373	82	1.9	81	87	6	226	27	15	27	29	1.96
12032214--12032394	82	2.2	81	82	4	222	27	15	27	29	1.96
12033321--12033373	20	2.7	20	96	0	97	15	32	33	18	1.92
12042223--12042307	44	2.0	42	81	9	100	35	22	12	29	1.91
12050441--12050507	20	3.3	20	91	0	107	32	13	20	32	1.92
12050559--12050677	25	4.8	25	93	2	197	27	21	21	29	1.98
12050559--12050711	50	3.1	50	85	8	170	30	18	22	28	1.97
12050559--12050711	75	2.0	75	82	9	188	30	18	22	28	1.97
12050896--12050959	31	2.1	31	93	0	110	37	15	23	23	1.93
12055092--12055487	199	2.0	199	100	0	792	28	14	32	25	1.94
12058636--12058691	11	5.5	11	71	16	57	35	12	19	32	1.89
12058625--12058691	20	3.3	20	93	0	116	34	11	20	32	1.90
12058718--12058909	24	7.9	24	92	2	260	28	20	20	29	1.98
12062166--12062456	143	2.0	146	93	3	498	36	12	24	26	1.91
12068019--12068125	28	3.8	28	91	0	151	28	25	11	34	1.90
12078344--12078453	43	2.5	42	84	11	143	29	26	19	25	1.98
12078754--12078786	15	2.1	16	88	5	50	63	6	3	27	1.32
12080955--12080979	13	1.9	13	100	0	50	0	48	28	24	1.52
12082915--12083040	29	4.3	29	81	3	155	32	30	13	23	1.93
12088536--12088568	7	4.7	7	96	0	57	63	0	24	12	1.28
12088532--12088568	14	2.6	14	91	0	65	64	0	21	13	1.27
12095468--12095493	13	2.0	13	100	0	52	7	38	38	15	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12099249--12099287	18	2.1	19	90	4	62	41	0	56	2	1.13
12106431--12106607	48	3.7	48	70	11	155	24	28	18	28	1.98
12109805--12109923	46	2.6	45	88	6	161	25	19	31	23	1.98
12110930--12110985	28	2.0	28	89	10	87	16	21	44	17	1.86
12113368--12113394	3	9.0	3	100	0	54	66	0	0	33	0.92
12125556--12125727	93	1.8	93	94	0	308	27	30	21	20	1.98
12125548--12125723	46	3.8	46	81	10	214	28	29	21	21	1.98
12130318--12130355	20	2.0	18	90	10	58	55	15	26	2	1.54
12132286--12132716	215	2.0	215	100	0	862	34	22	19	22	1.96
12135094--12135207	40	2.9	40	90	3	178	26	26	21	25	2.00
12151041--12151316	48	5.8	47	74	3	203	23	29	19	26	1.98
12151088--12151326	96	2.5	95	82	2	271	25	29	17	26	1.98
12152072--12152430	185	1.9	184	96	0	664	27	20	13	38	1.90
12160403--12160476	29	2.6	29	86	4	96	27	16	31	25	1.96
12163609--12163692	44	1.9	44	80	4	98	38	10	23	27	1.88
12163879--12164068	54	3.5	54	84	5	240	35	15	24	24	1.94
12175760--12175851	34	2.8	33	78	8	87	29	23	23	22	1.99
12176254--12176353	27	3.7	27	85	2	121	25	15	19	41	1.89
12176241--12176369	54	2.4	55	74	7	131	30	14	17	37	1.89
12176347--12176407	27	2.3	27	82	5	70	39	14	18	27	1.90
12181461--12181917	96	4.8	96	88	2	657	28	16	27	28	1.97
12181457--12181913	48	9.5	48	78	3	472	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12181909--12181950	22	1.9	22	90	0	66	26	23	23	26	2.00
12193283--12193426	73	2.1	67	82	10	164	21	27	20	29	1.98
12198424--12198513	47	1.9	47	93	0	153	22	18	27	31	1.97
12200882--12200941	27	2.3	26	85	2	75	21	23	20	35	1.96
12215431--12215456	12	2.2	12	100	0	52	50	7	0	42	1.31
12215942--12216119	27	6.6	27	83	3	205	26	15	28	29	1.96
12215943--12216098	82	1.9	81	88	3	233	26	15	28	29	1.96
12215939--12216119	82	2.2	81	83	2	229	27	15	27	29	1.96
12224419--12224596	27	6.6	27	83	3	205	26	15	28	29	1.96
12224420--12224575	82	1.9	81	88	3	233	26	15	28	29	1.96
12224416--12224596	82	2.2	81	83	2	229	27	15	27	29	1.96
12241527--12242208	341	2.0	341	100	0	1364	32	23	16	26	1.96
12253118--12253355	27	8.8	27	97	0	449	29	29	14	26	1.95
12262498--12262527	14	2.1	14	93	0	51	20	0	6	73	1.05
12267947--12268058	27	4.2	26	85	7	143	37	23	23	16	1.93
12267947--12268058	54	2.1	54	88	3	163	37	23	23	16	1.93
12268978--12269042	27	2.4	27	100	0	130	30	27	13	27	1.94
12276257--12276304	17	2.7	18	77	3	53	14	6	4	75	1.16
12279385--12279427	21	2.0	22	81	4	52	18	4	13	62	1.48
12282608--12282632	5	5.0	5	100	0	50	40	0	0	60	0.97
12287685--12287742	5	11.2	5	79	20	66	18	3	0	77	0.91
12287687--12287761	6	12.7	6	72	13	57	14	5	1	78	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12287685--12287748	31	2.0	32	90	3	103	17	4	0	78	0.92
12293683--12293715	13	2.6	13	90	4	50	39	0	12	48	1.40
12303608--12303749	28	5.0	28	80	15	93	32	26	11	28	1.92
12303622--12303829	27	7.6	27	93	3	326	30	28	13	27	1.94
12303622--12303829	55	3.8	55	94	1	346	30	28	13	27	1.94
12303622--12303829	82	2.5	82	92	3	337	30	28	13	27	1.94
12309380--12309433	20	2.7	20	70	0	54	20	1	5	72	1.14
12310279--12310340	17	3.8	17	82	6	83	54	0	6	38	1.26
12311280--12311438	79	2.0	79	98	0	309	42	13	11	31	1.81
12311777--12311910	50	2.7	50	98	0	259	30	10	21	37	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172