genome.fa.s10.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  97  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32713725--32713854	59	2.2	59	92	0	215	26	5	11	56	1.56
32714966--32714996	16	1.9	16	93	0	53	35	22	0	41	1.54
32714963--32715002	20	2.0	20	85	0	53	37	22	0	40	1.54
32715233--32715379	53	2.7	54	76	3	152	26	23	15	34	1.95
32715234--32715430	108	1.8	110	84	4	274	25	24	15	34	1.94
32718540--32718575	19	1.9	18	88	5	54	19	11	8	61	1.54
32724054--32724229	56	3.1	56	99	0	343	45	9	22	22	1.80
32733010--32733194	79	2.3	81	84	7	236	24	22	27	25	2.00
32733011--32733194	40	4.6	40	83	9	216	24	22	27	25	2.00
32733063--32733227	79	2.1	79	84	6	210	26	21	27	25	1.99
32742293--32742410	59	2.0	59	100	0	236	37	11	15	35	1.84
32745028--32745159	40	3.3	39	80	5	149	23	21	27	28	1.99
32750017--32750095	38	2.1	38	82	0	95	43	13	12	30	1.82
32752499--32752707	41	5.1	40	87	5	251	38	22	21	18	1.94
32752864--32752957	14	6.7	14	69	18	52	27	1	26	44	1.61
32753040--32753083	21	2.1	21	86	0	61	22	2	36	38	1.67
32758895--32758925	10	3.1	10	100	0	62	38	19	9	32	1.84
32759641--32759669	15	1.9	15	100	0	58	27	3	20	48	1.66
32760401--32760445	15	2.9	15	87	9	56	44	0	0	55	0.99
32766374--32766623	50	5.0	50	74	9	213	30	24	17	28	1.97
32771010--32771048	20	2.0	20	89	0	60	33	12	2	51	1.54
32779858--32780033	56	3.1	56	99	0	343	45	9	22	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779858--32780068	112	1.9	112	81	7	259	48	8	21	20	1.76
32782550--32782701	40	3.8	41	88	3	202	24	21	28	26	1.99
32782550--32782721	80	2.2	80	82	3	204	23	20	27	27	1.99
32784110--32784151	15	2.8	15	82	10	50	61	7	2	28	1.35
32787985--32788043	31	1.9	31	96	0	109	47	1	5	45	1.34
32790039--32790118	40	2.0	40	95	0	142	20	27	15	37	1.92
32794338--32794431	28	3.4	28	88	2	118	26	12	27	32	1.93
32794366--32794447	27	3.0	27	85	5	76	30	12	24	32	1.92
32801966--32801991	12	2.2	12	100	0	52	50	7	0	42	1.31
32802434--32802531	27	3.5	28	88	5	128	27	13	27	31	1.94
32802462--32802544	27	3.0	27	87	5	96	30	12	25	32	1.92
32802434--32802545	28	4.0	27	83	6	98	29	12	25	33	1.92
32805029--32805064	18	2.0	18	88	0	54	83	0	16	0	0.65
32808579--32808612	18	1.9	18	88	5	52	41	2	0	55	1.15
32809950--32810070	47	2.6	46	78	15	133	27	19	29	23	1.98
32811003--32811028	3	8.7	3	100	0	52	69	0	0	30	0.89
32813198--32813357	39	4.1	39	90	0	239	21	21	30	27	1.98
32824926--32825098	46	3.7	45	79	17	162	27	20	29	22	1.98
32824977--32825145	46	3.7	46	83	9	184	26	19	30	23	1.98
32829149--32829354	40	5.2	40	92	0	333	27	25	23	23	2.00
32830733--32830758	13	2.0	13	100	0	52	61	7	0	30	1.24
32835185--32835336	40	3.8	40	89	1	207	24	28	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32837184--32837459	145	1.9	145	100	0	552	30	23	15	30	1.95
32837440--32837507	29	2.3	29	85	5	93	27	30	13	27	1.94
32837297--32837656	174	2.1	174	97	0	675	30	25	14	29	1.95
32837616--32837687	29	2.5	30	82	13	96	30	29	12	27	1.93
32843152--32843419	40	6.7	40	95	0	455	30	20	26	21	1.98
32850574--32850791	40	5.5	40	90	2	298	24	28	24	22	2.00
32855349--32855406	13	4.6	12	79	10	53	29	3	12	55	1.53
32855822--32855938	58	2.0	59	95	5	211	39	16	11	33	1.84
32862088--32862199	43	2.6	42	79	5	127	28	22	16	33	1.95
32864358--32864402	22	2.0	22	87	8	65	68	2	6	22	1.24
32868275--32868319	23	2.0	23	100	0	90	28	26	13	31	1.94
32875933--32876110	27	6.6	27	83	3	196	26	15	28	29	1.96
32875934--32876084	82	1.9	81	88	4	232	27	16	27	28	1.97
32883994--32884171	27	6.6	27	83	3	205	26	15	28	29	1.96
32883995--32884150	82	1.9	81	88	3	233	26	15	28	29	1.96
32883991--32884171	82	2.2	81	83	2	229	27	15	27	29	1.96
32885598--32886047	224	2.0	224	98	0	864	28	13	25	33	1.93
32886011--32886231	43	5.1	43	89	0	343	11	24	32	31	1.91
32886011--32886225	86	2.5	86	96	0	394	11	25	31	31	1.91
32889011--32889162	27	5.6	27	93	3	241	30	28	13	26	1.94
32889011--32889162	55	2.8	55	94	0	259	30	28	13	26	1.94
32894248--32894331	43	2.0	43	97	0	159	9	26	34	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32894296--32894358	27	2.3	27	97	0	117	7	25	33	33	1.85
32894253--32894401	70	2.1	70	96	0	271	10	24	32	32	1.88
32894323--32894452	43	3.0	43	91	0	224	11	24	32	31	1.91
32896121--32896714	293	2.0	294	97	0	1127	33	16	11	38	1.86
32897587--32897853	46	5.8	46	72	16	237	29	29	20	21	1.98
32897595--32897852	93	2.8	93	93	0	435	29	29	20	21	1.98
32897641--32897809	47	3.6	47	75	16	188	30	28	19	21	1.97
32903543--32903567	13	1.9	13	100	0	50	56	20	0	24	1.43
32904865--32904915	14	3.4	15	78	15	61	43	5	0	50	1.26
32907367--32907488	27	4.6	27	78	9	117	40	20	9	29	1.85
32907474--32907705	27	8.6	27	85	1	295	37	19	18	25	1.94
32907444--32907723	27	10.4	27	79	7	162	36	18	18	25	1.94
32908007--32908054	20	2.4	20	82	0	69	10	18	33	37	1.85
32908309--32908394	27	3.2	26	81	4	73	22	20	19	37	1.95
32908562--32908692	6	21.3	6	74	16	108	21	18	12	47	1.82
32908540--32908671	31	4.3	31	81	11	153	21	21	12	44	1.85
32908512--32908579	25	2.7	25	83	0	91	22	22	11	44	1.85
32908571--32908640	25	2.8	25	86	0	95	20	20	12	47	1.82
32908540--32908616	37	2.1	37	87	0	109	19	22	14	44	1.86
32908512--32908645	62	2.2	62	90	0	205	21	20	11	45	1.83
32908574--32908665	25	3.7	25	82	8	91	21	19	13	45	1.84
32915589--32915741	46	3.3	46	81	4	146	35	21	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32921627--32921764	67	2.1	67	90	0	213	23	22	17	36	1.94
32922473--32922516	16	2.8	16	89	0	61	43	0	31	25	1.55
32926389--32926476	44	2.0	44	95	0	158	27	20	29	22	1.99
32935688--32935888	45	4.6	45	83	6	243	35	25	15	22	1.94
32936982--32937010	14	2.0	15	93	6	51	51	20	0	27	1.47
32941901--32941939	20	1.9	21	89	5	62	38	10	2	48	1.51
32945735--32945821	43	2.0	43	82	4	104	25	25	12	36	1.91
32960877--32960981	44	2.4	44	88	3	149	25	17	26	30	1.97
32960877--32960995	44	2.7	44	85	5	134	26	18	26	29	1.98
32962117--32962222	53	2.0	53	100	0	212	18	20	33	26	1.96
32968705--32968825	43	2.8	43	82	7	131	23	17	28	31	1.97
32968625--32968825	44	4.7	43	71	13	144	22	18	27	30	1.98
32972503--32972593	47	1.9	47	100	0	182	17	28	5	48	1.69
32973488--32973566	29	2.8	29	86	7	101	24	13	35	26	1.93
32983996--32984020	10	2.5	10	100	0	50	68	8	0	24	1.16
32984772--32984883	38	2.9	37	84	2	134	16	21	29	33	1.95
32987860--32987921	30	2.1	29	87	3	88	27	30	30	11	1.91
32988679--32988799	50	2.6	49	82	12	130	24	28	19	28	1.98
32988717--32988847	46	2.9	43	80	8	122	23	28	20	27	1.99
32994742--32994850	40	2.8	40	81	1	121	26	28	21	23	1.99
32994822--32994881	29	2.1	29	90	3	95	26	25	25	23	2.00
32996088--32996163	38	2.0	38	100	0	152	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33002817--33002997	40	4.6	40	81	4	197	24	27	23	24	2.00
33016550--33016580	15	2.1	15	100	0	62	41	25	19	12	1.87
33025811--33025974	86	1.9	85	83	6	215	32	23	17	26	1.97
33027290--33027349	32	1.9	31	83	6	77	20	23	33	23	1.97
33028910--33029071	32	5.0	33	87	4	188	33	20	12	33	1.90
33029064--33029162	29	3.4	29	88	2	153	26	31	8	34	1.85
33033642--33033675	16	2.1	17	88	5	52	8	14	2	73	1.19
33043111--33043204	40	2.3	40	79	0	116	27	14	26	30	1.95
33044128--33044153	13	2.0	13	100	0	52	30	0	7	61	1.24
33045521--33045726	40	5.2	40	92	1	326	23	21	27	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172