genome.fa.s10.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  108  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36183075--36183117	21	2.0	22	81	4	52	32	0	30	37	1.58
36186974--36187017	21	2.2	20	87	4	61	6	34	0	59	1.24
36187282--36187473	78	2.5	78	90	1	289	39	18	14	28	1.89
36191948--36192031	40	2.2	40	82	4	100	46	11	8	33	1.71
36195999--36196030	3	10.7	3	100	0	64	65	0	0	34	0.93
36203214--36203341	64	2.0	64	98	0	247	42	3	7	46	1.51
36209077--36209145	19	3.4	19	69	19	50	56	21	1	20	1.50
36209090--36209153	18	3.2	18	70	21	56	57	21	0	20	1.40
36209118--36209180	32	2.0	32	84	6	83	61	22	1	14	1.41
36211909--36211952	11	3.9	11	82	5	61	15	2	6	75	1.12
36211902--36211953	23	2.3	23	93	0	86	13	1	7	76	1.07
36211902--36211955	11	4.7	12	76	17	60	14	1	7	75	1.09
36213892--36213937	22	2.1	22	83	0	56	43	8	4	43	1.55
36218840--36218871	10	3.3	10	91	8	57	62	0	0	37	0.95
36218857--36218898	22	1.9	22	90	0	66	71	4	0	23	1.05
36218951--36219009	23	2.4	25	83	5	77	72	8	3	15	1.21
36223585--36223637	17	3.1	17	80	2	61	22	28	32	16	1.96
36224086--36224161	35	2.2	35	82	0	89	21	21	25	32	1.97
36225567--36225595	14	2.0	15	93	6	51	27	10	41	20	1.85
36232230--36232264	18	2.0	18	88	5	54	82	8	2	5	0.91
36240015--36240044	4	7.5	4	92	0	51	73	0	3	23	0.98
36247320--36247411	27	3.4	28	80	5	91	58	14	7	19	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36264286--36264337	15	3.2	15	73	19	50	44	0	1	53	1.11
36264393--36264428	18	1.9	18	88	5	54	58	0	0	41	0.98
36264392--36264468	31	2.5	32	74	23	83	53	0	0	46	1.00
36264421--36264470	16	3.2	16	70	18	52	52	0	0	48	1.00
36264402--36264467	29	2.2	30	86	10	91	54	0	0	45	0.99
36265178--36265373	99	2.0	99	95	0	356	39	22	29	8	1.84
36266736--36266773	1	38.0	1	94	0	67	0	2	0	97	0.18
36270212--36270281	23	3.0	23	80	0	68	48	12	18	20	1.80
36271926--36272001	36	2.1	36	100	0	152	51	14	5	28	1.64
36285070--36285169	42	2.3	43	79	5	114	28	18	25	29	1.98
36289405--36289585	40	4.6	40	78	10	192	26	28	20	24	1.99
36289405--36289585	79	2.3	80	80	8	199	26	28	20	24	1.99
36292709--36292752	19	2.3	19	84	7	54	56	25	2	15	1.51
36295410--36295845	91	4.7	91	90	5	658	47	10	9	31	1.71
36295412--36295845	190	2.3	182	90	3	663	48	10	9	31	1.71
36296156--36296196	17	2.4	17	95	0	73	39	9	0	51	1.35
36296566--36296627	19	3.2	19	67	13	54	51	12	14	20	1.75
36299601--36299641	22	1.9	22	90	5	66	12	39	26	21	1.89
36300627--36300664	20	1.9	20	88	0	58	34	34	2	28	1.71
36300750--36300871	43	2.9	42	81	2	163	29	23	14	31	1.95
36308073--36308196	43	2.9	43	80	2	142	33	28	16	22	1.95
36311320--36311445	49	2.6	49	87	3	173	23	26	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36312284--36312331	26	1.9	24	91	8	78	39	14	0	45	1.45
36312300--36312359	16	3.6	17	70	18	54	38	20	0	41	1.52
36319097--36319222	49	2.6	49	84	3	164	22	26	20	30	1.98
36325981--36326015	18	1.9	19	88	11	56	40	2	25	31	1.70
36328350--36328519	43	4.0	43	79	6	166	32	26	15	25	1.95
36350361--36350394	17	1.9	18	94	5	61	55	29	0	14	1.40
36353035--36353132	35	2.8	35	92	3	162	42	29	12	15	1.83
36353272--36353346	36	2.1	36	92	0	123	45	22	2	29	1.66
36353441--36353557	35	3.3	35	85	3	146	43	27	11	17	1.84
36360516--36360693	46	3.8	45	70	12	119	29	19	26	24	1.98
36360676--36360747	34	2.1	34	97	0	135	27	20	27	23	1.99
36362087--36362128	15	2.8	15	88	0	66	30	7	0	61	1.22
36365946--36366057	10	11.5	10	71	12	72	68	2	3	25	1.18
36365870--36366065	19	10.3	19	66	14	82	66	2	3	28	1.20
36365945--36366112	29	5.8	29	72	10	110	64	3	4	27	1.28
36365963--36366112	58	2.5	60	84	7	184	65	4	4	26	1.28
36365970--36366075	10	10.7	10	73	7	56	65	2	2	29	1.21
36366299--36366354	19	2.8	20	83	5	78	37	0	0	62	0.95
36366281--36366333	28	1.9	27	88	3	79	37	1	0	60	1.08
36366306--36366366	19	3.2	19	83	2	77	40	0	0	59	0.98
36366365--36366548	90	2.0	90	83	4	228	34	9	21	34	1.87
36367279--36367325	14	3.1	15	75	9	51	23	2	4	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36368679--36368769	27	3.6	27	67	24	81	29	9	12	48	1.73
36368661--36368785	47	2.7	46	92	3	205	28	8	12	51	1.67
36368660--36368821	47	3.5	47	86	5	204	29	8	12	50	1.70
36383697--36383843	43	3.4	42	80	7	163	33	25	17	23	1.96
36383697--36383842	44	3.4	42	78	10	154	32	25	17	23	1.97
36394434--36394469	18	2.0	18	88	0	54	25	22	0	52	1.47
36401577--36401616	20	2.0	20	85	9	55	35	10	12	42	1.76
36403387--36403434	24	2.0	25	91	4	80	20	25	2	52	1.58
36412818--36412878	30	2.0	30	90	0	95	40	6	22	29	1.79
36423824--36423858	3	11.7	3	100	0	70	31	0	0	68	0.90
36428031--36428115	41	2.1	41	93	0	143	35	21	20	23	1.96
36439109--36439167	23	2.4	25	81	13	61	49	6	3	40	1.46
36440097--36440136	19	2.0	20	85	4	55	45	0	27	27	1.54
36440338--36440374	9	4.1	9	92	0	65	29	10	13	45	1.77
36443451--36443512	25	2.5	25	97	0	115	33	1	3	61	1.22
36450139--36450211	38	1.9	38	94	0	128	36	13	23	26	1.92
36450271--36450446	46	3.8	46	80	7	212	22	20	27	29	1.98
36450267--36450439	93	1.9	93	95	0	310	22	20	28	28	1.99
36452854--36452901	21	2.4	20	86	6	62	22	25	10	41	1.85
36453073--36453142	19	3.5	20	90	7	108	42	21	24	11	1.85
36453073--36453151	21	4.0	20	90	6	108	43	20	24	12	1.86
36460088--36460136	21	2.4	20	83	12	64	22	26	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36463061--36463285	119	1.9	120	82	6	287	26	27	21	24	1.99
36463042--36463285	40	6.1	40	83	6	282	26	27	21	25	2.00
36472551--36472871	48	6.9	48	69	14	199	28	26	18	26	1.98
36473781--36473827	23	2.0	23	100	0	94	38	17	23	21	1.93
36475679--36475717	6	6.5	6	100	0	78	33	33	0	33	1.58
36475741--36475770	12	2.5	12	88	0	51	20	13	13	53	1.72
36475813--36475860	15	3.1	15	74	14	53	0	20	2	77	0.88
36482386--36482412	13	2.1	13	100	0	54	14	29	33	22	1.94
36497163--36497354	93	2.1	93	97	0	366	45	18	7	27	1.77
36497422--36497448	2	13.5	2	100	0	54	48	0	0	51	1.00
36502092--36502134	20	2.2	20	86	0	59	34	4	2	58	1.32
36503965--36504021	29	2.0	29	92	0	96	35	28	10	26	1.89
36507387--36507454	30	2.3	30	82	5	75	48	5	17	27	1.70
36511465--36511571	19	5.8	18	67	18	51	48	2	3	44	1.35
36518470--36518540	35	2.0	35	94	0	124	42	23	14	19	1.88
36520684--36520722	19	2.1	19	95	0	69	33	28	20	17	1.96
36526124--36526206	22	3.8	22	80	0	94	40	14	25	19	1.89
36526124--36526230	22	4.9	22	79	4	90	41	12	24	22	1.88
36530674--36530803	20	6.2	20	75	10	107	15	16	20	47	1.82
36544916--36545048	70	1.9	67	87	4	194	43	14	11	30	1.80
36545669--36545724	29	2.0	27	86	13	78	57	7	0	35	1.26
36545675--36545716	19	2.2	19	91	0	66	57	7	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36545715--36545744	16	1.9	16	93	6	53	43	0	0	56	0.99
36547167--36547221	16	3.4	16	85	5	76	41	7	21	29	1.80
36547207--36547295	44	2.0	45	84	8	119	33	3	24	38	1.72
36551060--36551102	21	2.0	21	86	9	59	37	4	6	51	1.50
36557324--36557350	8	3.4	8	100	0	54	55	0	0	44	0.99
36562213--36562299	3	30.3	3	68	21	53	31	1	4	63	1.22
36562213--36562279	19	3.5	19	72	25	52	28	1	4	65	1.21
36562205--36562299	40	2.4	39	78	16	97	32	1	4	62	1.22
36563774--36563830	28	2.0	28	86	0	78	42	3	14	40	1.62
36570544--36570617	34	2.2	34	95	2	132	37	9	0	52	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172