genome.fa.s10.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  150  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49081779--49081939	75	2.1	76	82	6	193	29	19	18	32	1.96
49081631--49082565	168	5.6	168	83	8	778	30	16	18	34	1.93
49081970--49082112	75	1.9	75	84	2	189	28	19	20	30	1.97
49082112--49082521	80	5.2	80	82	4	499	30	16	18	34	1.93
49082114--49082576	160	2.9	158	85	4	619	30	15	18	34	1.92
49082134--49082567	80	5.4	79	80	8	404	31	16	18	33	1.93
49081946--49082612	159	4.1	155	82	9	645	29	16	17	35	1.93
49083092--49083137	16	2.8	17	86	6	76	67	15	6	10	1.40
49091416--49091469	25	2.2	25	96	0	99	48	20	5	25	1.71
49094966--49095109	55	2.6	54	84	3	182	41	17	24	16	1.89
49096235--49096975	180	4.2	179	83	6	923	30	17	23	28	1.97
49096518--49096601	43	2.0	43	86	9	118	32	13	26	28	1.93
49096287--49097037	355	2.1	356	89	1	1130	30	18	23	27	1.97
49098059--49098108	26	2.0	24	88	7	73	64	6	0	30	1.18
49098079--49098137	21	2.8	21	78	12	59	69	8	0	22	1.15
49100716--49100780	14	4.6	14	73	11	53	10	3	7	78	1.06
49100716--49100754	16	2.4	16	91	4	60	7	2	7	82	0.94
49100716--49100775	27	2.2	27	79	5	68	10	3	8	78	1.07
49104764--49104820	25	2.2	26	84	9	73	12	3	10	73	1.21
49105479--49105503	2	12.5	2	100	0	50	52	0	0	48	1.00
49108352--49108466	57	2.0	57	98	0	221	22	32	13	32	1.92
49111473--49111540	16	4.2	16	96	0	127	38	35	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49114162--49114295	68	1.9	70	85	5	184	44	4	4	46	1.43
49122559--49122612	23	2.4	22	78	9	56	25	9	9	55	1.61
49133907--49134163	122	2.1	122	84	5	342	39	15	9	35	1.80
49136995--49137025	15	2.1	15	93	0	53	35	0	0	64	0.94
49142784--49142856	36	2.0	36	100	0	146	24	13	16	45	1.84
49143355--49143497	68	2.1	68	97	0	268	27	11	32	27	1.92
49144049--49144092	20	2.3	18	88	7	61	52	0	2	45	1.13
49144057--49144102	20	2.2	21	88	7	76	47	0	0	52	1.00
49144304--49144348	19	2.4	18	86	13	65	66	0	33	0	0.92
49145992--49146184	21	9.1	21	89	2	278	32	25	25	16	1.96
49145992--49146184	42	4.5	42	94	1	314	32	25	25	16	1.96
49146555--49146612	15	3.8	15	86	2	80	53	12	0	34	1.38
49146848--49146897	24	2.2	22	82	7	55	2	36	4	58	1.29
49146919--49146950	5	6.2	5	96	3	55	56	0	0	43	0.99
49146973--49147001	8	3.6	8	100	0	58	62	0	0	37	0.96
49150520--49150565	20	2.3	20	88	3	67	41	13	28	17	1.86
49151862--49152407	273	2.0	273	97	0	1029	41	8	18	30	1.80
49152806--49153538	46	16.0	46	88	0	1002	41	14	23	21	1.89
49164100--49164132	5	6.8	5	93	6	59	18	0	0	81	0.68
49164101--49164131	14	2.2	14	100	0	62	19	0	0	80	0.71
49168646--49168725	39	2.1	39	100	0	160	41	23	12	22	1.88
49176511--49176544	12	2.9	12	86	4	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49176668--49176729	30	2.1	30	93	0	106	59	11	3	25	1.46
49177497--49177552	18	3.2	17	80	16	69	53	1	0	44	1.11
49179392--49179632	112	2.1	112	95	0	428	43	13	7	35	1.74
49188654--49188736	35	2.4	35	84	9	109	43	30	6	20	1.76
49188705--49188762	21	2.8	21	79	10	57	44	31	3	20	1.68
49189240--49189292	10	5.1	10	82	8	70	37	1	1	58	1.20
49189415--49189448	18	1.9	18	94	5	61	32	5	8	52	1.56
49205510--49205670	51	3.2	51	94	0	259	27	22	16	32	1.96
49212592--49212701	51	2.2	51	91	0	175	32	21	11	33	1.90
49213785--49213830	23	2.0	23	95	0	83	39	19	13	28	1.89
49214469--49214623	60	2.6	59	80	7	170	53	1	0	43	1.16
49216571--49216596	2	13.0	2	100	0	52	50	50	0	0	1.00
49221759--49221803	19	2.3	20	92	3	74	68	2	0	28	1.01
49221736--49221812	29	2.7	29	74	8	75	66	3	1	28	1.17
49221768--49221814	19	2.5	20	86	6	62	72	2	2	23	1.06
49222340--49222418	40	2.0	40	97	0	149	39	7	15	37	1.76
49225967--49226043	27	2.8	28	72	16	72	38	1	3	55	1.26
49234885--49234911	12	2.2	12	100	0	54	22	11	22	44	1.84
49236505--49236558	26	2.1	26	100	0	108	35	20	0	44	1.52
49238091--49238115	12	2.1	12	100	0	50	40	16	16	28	1.89
49239256--49239331	27	2.7	26	84	10	89	65	2	0	31	1.06
49239282--49239342	27	2.3	26	85	5	77	62	0	3	34	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49240996--49241033	20	1.9	20	84	10	51	42	13	23	21	1.88
49242933--49243206	46	6.0	46	96	0	487	37	15	23	22	1.93
49245068--49245097	14	2.1	14	100	0	60	30	20	13	36	1.90
49249367--49249411	14	3.0	14	78	15	54	68	0	6	24	1.13
49250397--49250434	18	2.1	19	85	5	51	26	7	5	60	1.46
49250564--49250605	20	2.1	21	82	8	52	35	0	9	54	1.33
49256310--49256341	12	2.6	13	85	14	50	15	12	31	40	1.85
49261950--49262103	80	1.9	81	81	4	186	42	9	5	42	1.58
49261950--49262127	80	2.3	81	77	7	179	44	10	4	41	1.58
49263398--49263484	23	3.8	22	68	22	56	41	1	10	47	1.45
49265709--49265744	15	2.6	13	84	16	54	69	0	2	27	1.02
49265709--49265744	14	2.6	14	87	12	56	69	0	2	27	1.02
49266217--49266270	13	4.2	13	80	2	65	37	3	1	57	1.27
49272507--49272654	51	2.9	51	84	2	190	28	23	15	32	1.95
49272678--49272794	24	4.5	28	79	16	151	26	23	14	35	1.94
49272678--49272794	52	2.2	52	93	0	207	26	23	14	35	1.94
49274284--49274321	12	3.0	13	76	7	51	57	2	0	39	1.12
49275729--49275762	17	1.9	18	94	5	61	76	5	5	11	1.14
49275694--49275766	32	2.3	32	83	9	87	71	5	5	17	1.25
49275806--49275835	13	2.3	13	100	0	60	60	0	6	33	1.23
49276457--49276539	41	2.0	41	100	0	166	33	16	16	32	1.92
49277905--49278010	7	15.1	7	92	0	167	44	3	27	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49280446--49280483	19	2.0	20	85	15	53	7	0	7	84	0.79
49280445--49280508	28	2.3	27	81	7	74	10	1	7	79	0.99
49281821--49281868	20	2.5	20	86	3	62	64	2	6	27	1.28
49282673--49282708	14	2.6	14	100	0	72	36	19	8	36	1.82
49283543--49283619	33	2.3	33	84	0	91	22	41	18	18	1.90
49287532--49287581	12	4.2	12	80	10	66	62	18	0	20	1.34
49287535--49287588	12	4.5	12	79	9	65	61	16	0	22	1.35
49287876--49287918	13	3.2	13	80	12	52	2	25	0	72	0.97
49287938--49287984	11	4.4	11	86	5	51	2	27	0	70	0.99
49288778--49288814	13	2.5	15	87	12	51	51	0	5	43	1.24
49288802--49288839	20	1.9	20	94	0	67	55	0	5	39	1.23
49295773--49295831	18	3.2	18	70	15	57	35	16	10	37	1.83
49296373--49296423	24	2.1	24	85	7	68	80	1	5	11	0.97
49301021--49301115	18	5.3	18	75	0	82	36	15	12	34	1.86
49301015--49301132	36	3.3	35	75	2	110	34	15	12	37	1.85
49302559--49302600	13	3.2	13	81	18	52	52	2	0	45	1.13
49304722--49304750	13	2.1	14	93	6	51	51	6	0	41	1.28
49314881--49314987	53	2.0	54	90	5	173	34	17	12	35	1.87
49317655--49317690	2	18.0	2	100	0	72	50	0	50	0	1.00
49335431--49335830	133	3.0	134	86	4	508	36	18	18	27	1.94
49344188--49344227	19	2.2	18	86	4	53	42	10	5	42	1.60
49353425--49353522	42	2.3	42	85	3	144	50	12	5	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49353539--49353578	19	2.2	18	90	4	62	42	12	2	42	1.56
49369122--49369363	121	2.0	121	95	1	441	38	5	11	43	1.64
49369851--49369898	3	16.0	3	100	0	96	0	33	33	33	1.58
49371399--49371433	16	2.2	16	94	0	61	48	20	11	20	1.79
49377836--49377888	23	2.4	22	76	20	56	9	18	1	69	1.25
49384643--49384682	20	2.0	20	90	0	62	50	2	32	15	1.57
49409428--49409475	12	4.3	12	75	20	59	47	12	0	39	1.41
49409440--49409478	20	2.0	20	100	0	78	43	10	0	46	1.37
49411122--49411197	29	2.6	29	100	0	152	26	10	13	50	1.73
49421324--49421361	17	2.3	17	86	4	51	47	2	2	47	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172