genome.fa.s10.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  136  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44761681--44762008	164	2.0	164	98	0	629	39	10	9	39	1.73
44763785--44763823	20	2.0	20	85	10	53	33	5	15	46	1.68
44772869--44772920	3	17.3	3	95	0	95	65	0	0	34	0.93
44777686--44777737	3	17.3	3	95	0	95	65	0	0	34	0.93
44782373--44782429	30	1.9	30	85	0	78	15	28	31	24	1.96
44784196--44784220	11	2.3	11	100	0	50	72	0	0	28	0.86
44785378--44785483	42	2.5	42	81	4	133	27	20	27	24	1.99
44792521--44792581	30	2.0	30	83	0	77	31	22	8	37	1.84
44793780--44794178	44	8.9	44	77	6	345	32	17	21	29	1.96
44793798--44794110	89	3.6	84	78	7	302	31	16	22	29	1.96
44793798--44794046	86	2.9	85	79	5	284	30	17	22	29	1.97
44795815--44795859	4	11.2	4	81	9	56	22	0	4	73	1.01
44795818--44795856	21	1.9	20	89	5	60	20	0	5	74	1.01
44800316--44800350	14	2.5	14	90	0	52	25	22	31	20	1.98
44810220--44810270	10	5.2	9	78	21	50	35	0	1	62	1.06
44810220--44810270	20	2.5	21	81	15	63	35	0	1	62	1.06
44812369--44812412	16	2.6	17	82	13	56	18	6	4	70	1.27
44818331--44818367	18	2.0	19	89	5	58	21	8	5	64	1.40
44818330--44818367	19	2.0	19	90	10	60	21	7	5	65	1.38
44819100--44819176	31	2.5	31	81	6	86	45	10	6	37	1.64
44819154--44819221	31	2.3	29	81	18	88	47	16	4	32	1.66
44823121--44823145	11	2.3	11	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44829479--44829532	27	2.0	27	100	0	108	29	0	18	51	1.46
44832624--44832682	31	1.9	30	82	3	73	27	13	16	42	1.86
44837413--44837515	51	2.0	51	88	0	152	37	13	19	29	1.90
44840939--44841016	31	2.5	31	81	6	88	23	15	29	32	1.95
44843028--44843327	163	1.8	165	85	4	428	27	11	21	40	1.87
44848628--44848703	39	1.9	40	97	2	145	51	7	18	22	1.72
44852047--44852080	11	2.8	12	91	8	52	32	2	0	64	1.08
44854873--44854924	26	2.0	26	100	0	104	34	19	11	34	1.88
44856343--44856412	35	2.0	35	100	0	140	28	5	2	62	1.32
44861191--44861233	21	2.0	21	100	0	86	41	13	9	34	1.77
44862941--44862970	14	2.1	14	93	0	51	36	20	13	30	1.90
44864453--44864507	24	2.3	24	84	6	67	29	3	5	61	1.35
44867246--44867310	34	1.9	33	84	9	87	36	9	12	41	1.75
44867388--44867440	20	2.4	23	79	20	69	43	3	0	52	1.19
44870276--44870359	17	5.1	17	72	5	82	34	35	8	21	1.84
44870275--44870359	33	2.6	33	78	0	107	34	36	8	21	1.83
44881296--44881343	24	2.0	24	100	0	96	45	4	20	29	1.70
44885023--44885175	24	6.4	23	71	15	80	34	22	24	17	1.96
44885330--44885376	24	1.9	24	82	4	58	36	19	27	17	1.93
44888556--44888658	45	2.3	45	82	0	134	44	16	16	22	1.86
44888545--44888664	45	2.5	51	73	16	126	45	15	16	22	1.85
44888642--44888673	6	5.3	6	100	0	64	50	15	15	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44892161--44892191	14	2.2	14	100	0	62	45	0	22	32	1.53
44895267--44895364	23	4.3	23	86	2	144	33	25	20	20	1.97
44895274--44895362	45	2.0	45	90	0	142	33	25	21	19	1.97
44898523--44898576	23	2.3	23	93	3	90	38	22	0	38	1.54
44901668--44901736	24	2.9	24	74	6	70	50	2	0	46	1.16
44902183--44902230	20	2.4	20	74	22	55	39	18	4	37	1.70
44903538--44903675	69	2.0	69	100	0	276	30	24	17	27	1.97
44904579--44904618	14	2.9	14	88	0	62	40	0	2	57	1.12
44904813--44904882	23	3.2	23	62	25	60	40	7	22	30	1.81
44909244--44910032	222	3.5	220	77	8	695	21	14	17	46	1.84
44912356--44912399	18	2.4	19	81	11	56	36	0	4	59	1.18
44912769--44912816	25	2.0	23	84	11	62	52	12	0	35	1.40
44925035--44925116	40	2.0	40	97	0	155	21	10	14	52	1.72
44928146--44928202	27	2.1	28	81	12	66	43	1	8	45	1.45
44930487--44930511	3	8.3	3	100	0	50	32	0	0	68	0.90
44938735--44938764	15	2.0	15	93	0	51	40	6	10	43	1.64
44941528--44941591	33	1.9	33	93	0	110	18	15	12	53	1.73
44942045--44942092	21	2.2	22	85	10	64	47	2	2	47	1.25
44946607--44946666	19	3.4	16	77	20	57	38	3	0	58	1.15
44946606--44946740	63	2.2	63	78	14	147	36	6	2	54	1.39
44952203--44952296	25	3.7	25	67	18	59	35	7	7	50	1.59
44952215--44952320	51	2.1	51	98	0	203	37	4	9	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44952487--44952553	34	1.9	35	87	3	100	46	8	8	35	1.67
44952876--44952909	2	17.0	2	93	0	59	47	0	0	52	1.00
44955641--44955701	31	2.0	31	83	0	77	40	3	11	44	1.57
44955828--44955901	29	2.4	30	77	8	78	51	12	1	35	1.48
44958451--44958497	21	2.2	21	88	0	67	27	10	10	51	1.70
44966437--44966495	31	1.9	31	82	0	73	37	10	10	42	1.73
44970912--44970994	38	2.3	36	81	6	96	61	2	1	34	1.17
44973685--44973907	44	5.1	44	66	16	138	26	27	21	24	1.99
44973572--44973969	88	4.6	88	86	2	518	28	24	21	25	1.99
44975864--44975906	18	2.6	16	81	7	50	11	13	4	69	1.33
44975966--44976180	21	9.8	21	65	21	68	25	8	3	62	1.39
44976050--44976183	3	45.7	3	72	16	86	28	7	0	63	1.26
44976053--44976082	16	1.9	15	93	6	51	23	0	0	76	0.78
44976050--44976183	14	9.4	14	69	16	71	28	7	0	63	1.26
44976092--44976175	23	3.8	23	79	4	84	30	8	1	59	1.34
44976056--44976153	20	4.9	20	75	12	76	29	7	1	62	1.29
44976327--44976422	28	3.6	26	74	13	79	32	5	4	58	1.39
44978609--44978638	15	2.0	15	93	0	51	20	0	3	76	0.92
44978854--44978897	18	2.4	19	81	7	56	43	0	0	56	0.99
44978893--44978946	6	9.5	6	76	11	60	35	1	0	62	1.06
44979127--44979174	19	2.6	19	80	12	55	75	2	10	12	1.14
44981697--44981750	24	2.2	24	87	6	74	12	27	20	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44982205--44982247	20	2.0	21	82	8	52	37	0	0	62	0.95
44988379--44988616	43	5.4	42	80	8	224	26	28	19	25	1.99
44988399--44988497	49	2.0	49	90	0	153	22	29	21	27	1.99
44988379--44988616	86	2.7	88	80	5	284	26	28	19	25	1.99
44988749--44988795	19	2.5	19	76	10	51	72	4	2	21	1.12
44991582--44991718	46	3.0	46	89	0	202	24	31	9	34	1.88
44991728--44992206	47	10.2	47	87	2	660	23	27	13	34	1.92
44991971--44992046	22	3.3	22	65	28	59	22	30	14	32	1.94
44992018--44992093	22	3.3	22	68	22	66	26	28	11	32	1.92
44994957--44994981	12	2.1	12	100	0	50	52	16	0	32	1.44
44997651--44997683	17	1.9	17	93	0	57	57	9	27	6	1.53
44998055--44998115	7	8.7	7	96	0	113	27	0	0	72	0.85
44998428--44998558	37	3.5	37	87	4	201	21	16	50	12	1.77
44998650--44998694	23	2.0	23	81	0	54	51	28	0	20	1.48
44998830--44998956	48	2.7	46	83	7	166	19	0	29	50	1.48
44998961--44999219	41	6.4	41	91	2	416	20	22	22	35	1.96
44998961--44999219	81	3.2	82	91	2	416	20	22	22	35	1.96
44998961--44999219	122	2.1	122	92	1	430	20	22	22	35	1.96
44998961--44999249	122	2.4	121	84	6	361	20	21	21	35	1.96
44999882--44999911	13	2.4	13	94	5	53	0	16	0	83	0.65
45001667--45002131	131	3.6	130	82	6	543	26	17	20	35	1.95
45013721--45014065	45	7.6	45	69	12	211	34	18	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45013716--45014155	137	3.2	137	88	1	648	34	19	18	27	1.95
45016528--45016991	131	3.6	131	85	4	613	25	18	20	35	1.95
45023584--45023702	60	2.0	60	93	0	202	54	12	0	32	1.38
45023870--45023917	3	16.3	3	85	8	55	0	31	0	68	0.90
45023876--45023944	19	3.7	19	75	18	56	0	34	0	65	0.93
45032727--45032895	43	4.0	42	75	13	157	34	23	15	26	1.94
45032727--45032888	85	1.9	85	85	7	222	34	23	16	25	1.95
45036182--45036216	16	2.1	18	89	10	56	37	14	2	45	1.59
45053464--45053547	26	3.2	26	86	3	125	34	4	23	36	1.76
45054295--45054347	26	2.0	26	85	7	72	37	22	15	24	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172