genome.fa.s10.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  154  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50419813--50419919	52	2.1	52	96	0	196	34	11	17	36	1.86
50424360--50424462	54	1.9	54	87	0	152	28	19	22	30	1.98
50433323--50433405	22	3.7	23	80	7	98	40	6	0	53	1.26
50433707--50433752	24	1.9	24	90	0	74	30	8	2	58	1.40
50440534--50440596	30	2.1	30	93	0	108	28	3	12	55	1.52
50440719--50440752	12	3.1	11	91	8	52	61	2	0	35	1.11
50441614--50441666	24	2.2	25	82	3	63	50	26	5	16	1.67
50442885--50443159	137	2.0	138	84	3	358	29	26	22	21	1.99
50446832--50446891	31	1.9	32	82	3	77	35	11	13	40	1.81
50465773--50465817	21	2.1	21	83	0	54	22	11	8	57	1.60
50468520--50468560	19	2.2	18	86	4	55	68	7	4	19	1.32
50468527--50468562	18	1.9	19	94	5	65	66	11	5	16	1.40
50478329--50478385	6	9.2	6	81	7	60	19	0	3	77	0.92
50478326--50478383	13	4.5	13	72	14	57	18	0	3	77	0.91
50478329--50478377	19	2.3	21	86	13	66	18	0	4	77	0.92
50479420--50479473	4	13.5	4	76	21	51	74	0	5	20	1.02
50499739--50499832	48	2.0	48	87	8	138	19	12	27	40	1.88
50500229--50500253	5	5.0	5	100	0	50	40	0	0	60	0.97
50509215--50509264	17	2.7	20	78	18	70	10	0	44	46	1.37
50513186--50513578	156	2.6	146	90	6	569	34	15	20	28	1.94
50513652--50514090	144	3.0	144	93	0	727	33	18	20	26	1.96
50516737--50516786	19	2.7	18	81	6	55	66	2	4	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50519274--50519471	98	2.0	97	95	1	297	36	24	11	27	1.89
50520627--50520751	19	6.1	21	80	9	86	36	16	8	38	1.79
50520654--50520766	19	5.8	19	86	4	163	37	15	10	37	1.82
50520654--50520765	40	2.8	40	93	2	183	37	14	10	37	1.81
50522515--50522836	166	1.9	166	86	2	459	36	18	14	30	1.91
50524390--50524426	12	3.0	12	92	4	56	45	8	13	32	1.73
50526394--50526553	80	2.0	80	97	0	302	24	31	11	33	1.90
50527180--50527848	144	4.6	144	97	0	1232	35	15	20	29	1.93
50530718--50530767	19	2.7	18	81	6	55	66	2	4	28	1.21
50533256--50533453	98	2.0	97	95	1	297	36	24	11	27	1.89
50534607--50534731	19	6.1	21	80	9	86	36	16	8	38	1.79
50534634--50534746	19	5.8	19	86	4	163	37	15	10	37	1.82
50534634--50534745	40	2.8	40	93	2	183	37	14	10	37	1.81
50536495--50536816	166	1.9	166	86	2	459	36	18	14	30	1.91
50538370--50538406	12	3.0	12	92	4	56	45	8	13	32	1.73
50551137--50551168	9	3.6	9	100	0	64	12	0	9	78	0.97
50552442--50552489	19	2.6	19	80	9	55	35	2	14	47	1.56
50552499--50552593	42	2.3	43	88	3	140	32	4	12	50	1.59
50555962--50556202	121	2.0	121	99	0	473	31	14	15	38	1.88
50567816--50567993	73	2.5	71	80	5	200	26	16	23	32	1.96
50568011--50568854	75	11.0	74	82	9	836	28	17	20	33	1.95
50568235--50569288	159	6.7	157	80	9	984	28	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50568680--50568714	14	2.5	14	95	0	61	17	11	5	65	1.43
50568542--50568782	86	2.8	84	85	6	283	25	16	19	38	1.92
50568542--50569100	71	6.8	83	74	15	330	26	17	20	35	1.94
50568448--50568941	245	2.0	244	82	7	599	26	17	20	36	1.94
50567997--50569287	549	2.4	518	75	14	1210	29	17	19	33	1.95
50569035--50569287	73	3.5	72	89	3	364	33	17	17	31	1.94
50570326--50570355	9	3.4	9	90	9	53	80	0	0	20	0.72
50577664--50577739	40	1.9	40	89	5	118	26	17	27	28	1.97
50583591--50583639	7	6.6	7	80	13	53	48	0	0	51	1.00
50583599--50583632	17	2.0	17	94	0	59	50	0	0	50	1.00
50583592--50583641	24	2.1	24	100	0	100	48	0	0	52	1.00
50584428--50584463	6	6.0	6	100	0	72	33	0	50	16	1.46
50586177--50586304	64	2.0	64	95	0	229	38	10	14	35	1.82
50589593--50589904	126	2.5	128	86	4	409	38	19	14	27	1.91
50591974--50592203	40	5.6	38	63	19	95	17	22	23	36	1.95
50591965--50592298	84	4.0	84	92	0	560	16	21	24	36	1.94
50592366--50592493	64	2.0	64	92	0	211	37	17	16	28	1.91
50602249--50602601	126	2.8	126	78	6	302	37	18	15	27	1.92
50602290--50602587	126	2.3	127	85	5	370	37	20	15	27	1.92
50608331--50608361	10	2.9	11	90	9	55	35	0	29	35	1.58
50608331--50608372	21	2.0	21	85	0	57	38	0	23	38	1.55
50608713--50608759	25	1.9	25	86	4	69	19	25	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50610484--50610606	39	3.2	39	80	3	124	26	29	22	21	1.99
50616369--50616508	39	3.6	39	82	3	124	27	27	21	23	1.99
50616402--50616525	39	3.2	39	84	0	149	28	28	20	23	1.99
50619570--50619656	21	4.0	23	79	10	92	39	25	19	16	1.92
50620027--50620084	15	3.8	15	88	2	89	51	12	0	36	1.39
50621340--50621376	5	7.2	5	96	3	65	56	0	0	43	0.99
50627473--50627562	33	2.8	33	83	8	121	33	24	10	32	1.88
50627475--50627588	33	3.5	33	80	7	97	32	23	10	33	1.89
50629811--50629842	16	1.9	17	93	6	57	56	0	0	43	0.99
50629821--50629864	22	2.0	21	86	4	61	43	0	0	56	0.99
50629879--50629920	13	2.9	14	80	13	50	54	0	0	45	0.99
50629883--50629919	16	2.3	16	86	13	58	59	0	0	40	0.97
50629952--50630008	15	3.5	15	73	17	60	50	0	0	49	1.00
50633489--50633588	50	2.0	50	100	0	200	36	16	24	24	1.94
50635538--50635580	22	1.9	22	85	4	59	74	2	16	6	1.14
50636112--50636140	14	2.1	14	100	0	58	48	0	0	51	1.00
50636216--50636240	6	4.2	6	100	0	50	52	0	0	48	1.00
50640894--50640964	33	2.1	34	84	7	92	28	1	15	54	1.49
50642410--50642440	6	5.2	6	96	0	53	0	45	16	38	1.47
50647664--50647709	23	2.0	23	87	4	67	45	8	6	39	1.61
50647671--50647715	23	2.0	23	86	0	63	40	11	8	40	1.72
50647824--50647849	12	2.2	12	100	0	52	7	15	30	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50647881--50648245	41	8.9	41	89	0	525	35	21	22	20	1.96
50648286--50648333	22	2.1	22	84	3	60	50	25	0	25	1.50
50648527--50648569	22	2.0	22	86	9	61	20	0	30	48	1.50
50648948--50649004	15	3.8	14	90	9	78	68	3	3	24	1.21
50648948--50649004	8	7.6	7	96	4	78	68	3	3	24	1.21
50648949--50648997	22	2.2	22	89	10	73	69	2	4	24	1.17
50651686--50651723	17	2.2	18	95	4	69	42	0	13	44	1.43
50651713--50651742	16	1.9	15	93	6	51	46	3	6	43	1.46
50659597--50659665	36	1.9	36	93	0	120	37	26	8	27	1.86
50673174--50673230	30	1.9	30	85	0	78	12	29	33	24	1.92
50676464--50676507	21	2.1	21	82	0	52	59	13	4	22	1.53
50699977--50700102	64	2.0	64	82	6	157	34	16	26	21	1.95
50704172--50704200	3	9.7	3	100	0	58	34	0	65	0	0.93
50729017--50729239	39	5.7	39	91	2	324	19	22	28	29	1.98
50732915--50732951	16	2.2	18	85	9	51	72	0	27	0	0.84
50735118--50735162	21	2.1	21	91	0	72	31	20	17	31	1.96
50746845--50746881	20	1.9	18	89	10	56	43	0	21	35	1.53
50748715--50748909	43	4.5	43	92	1	284	31	14	20	33	1.93
50749077--50749199	45	2.8	45	84	8	148	23	22	29	24	1.99
50757423--50757453	14	2.2	14	100	0	62	35	6	12	45	1.68
50758702--50758760	30	2.0	30	86	6	84	42	3	22	32	1.70
50774348--50774517	91	1.9	91	91	0	277	35	15	9	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50775665--50775742	2	43.5	2	68	29	52	43	0	3	52	1.19
50775696--50775741	5	8.6	5	95	4	65	41	0	0	58	0.98
50775665--50775742	9	8.7	10	68	30	52	43	0	3	52	1.19
50776015--50776046	13	2.5	13	94	0	55	31	0	12	56	1.37
50776140--50776381	50	4.7	50	84	4	288	26	23	29	20	1.99
50776144--50776389	100	2.4	104	86	6	349	25	23	28	21	1.99
50778606--50778633	7	4.0	7	100	0	56	42	28	14	14	1.84
50788307--50788342	12	2.9	12	91	4	54	5	16	2	75	1.12
50789545--50789585	20	2.2	20	91	8	68	73	0	26	0	0.84
50790876--50790915	21	2.0	19	85	9	53	42	0	15	42	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172