genome.fa.s10.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  125  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41759482--41761497	666	3.0	666	95	2	3539	30	18	19	31	1.96
41764876--41764904	12	2.3	13	94	5	51	72	0	3	24	1.00
41768926--41768987	30	2.1	30	90	0	97	41	17	17	22	1.90
41776962--41777000	18	2.2	18	90	0	60	25	28	28	17	1.98
41788191--41788238	24	2.0	23	96	4	87	56	8	4	31	1.48
41791249--41791336	38	2.3	38	92	0	140	30	12	22	34	1.91
41798758--41798891	49	2.7	49	88	2	196	26	20	26	27	1.99
41798758--41798883	51	2.5	51	90	2	193	26	19	26	27	1.99
41801086--41801111	11	2.4	11	100	0	52	23	38	30	7	1.83
41802377--41802417	22	1.9	21	85	5	55	26	14	2	56	1.51
41803858--41803928	6	11.5	6	92	4	99	15	0	1	83	0.73
41807225--41807273	24	2.0	24	100	0	98	24	0	20	55	1.44
41807888--41808080	96	2.0	96	98	0	377	36	12	17	32	1.88
41827851--41828113	40	6.6	40	88	3	325	26	27	20	24	1.99
41835804--41836066	40	6.6	40	88	3	325	26	27	20	24	1.99
41847906--41847943	20	2.0	19	85	10	51	42	13	21	23	1.88
41849757--41849793	15	2.7	14	84	16	51	32	0	0	67	0.91
41849723--41849962	129	1.9	127	87	9	353	33	5	4	56	1.41
41849905--41849964	25	2.5	24	75	8	59	31	6	3	58	1.40
41850079--41850131	27	2.0	27	88	0	79	28	7	3	60	1.41
41850322--41850353	15	2.1	15	94	0	55	31	3	0	65	1.08
41864067--41864120	27	2.0	27	100	0	108	29	14	11	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41868739--41868848	18	6.1	18	81	4	132	35	15	15	33	1.89
41869341--41869385	17	2.6	18	89	10	76	51	8	8	31	1.64
41869992--41870023	15	2.0	17	88	11	50	62	6	0	31	1.20
41871012--41871047	18	1.9	19	94	5	65	5	0	30	63	1.17
41873955--41873987	16	2.1	16	88	11	50	3	15	0	81	0.80
41876019--41876082	34	1.9	34	84	12	89	39	6	3	51	1.43
41877907--41877956	17	2.7	20	78	18	70	10	0	44	46	1.37
41882546--41882595	17	2.7	20	78	18	70	10	0	44	46	1.37
41886308--41886366	10	6.1	10	78	9	52	64	0	1	33	1.04
41886309--41886360	9	5.6	9	77	13	52	63	0	1	34	1.06
41886310--41886360	18	2.7	19	85	14	70	62	0	1	35	1.06
41887977--41888015	19	1.9	19	85	10	51	28	12	0	58	1.34
41891548--41891580	3	11.0	3	100	0	66	33	0	0	66	0.92
41898448--41898519	36	2.0	35	83	5	90	61	2	2	33	1.25
41901326--41901367	3	14.0	3	100	0	84	66	0	0	33	0.92
41903245--41903401	43	3.7	43	71	12	108	26	21	27	25	1.99
41905166--41905210	23	2.0	23	95	0	81	33	24	6	35	1.82
41908201--41908243	20	2.2	20	83	8	52	27	2	6	62	1.33
41911819--41911866	21	2.3	22	79	17	57	47	2	2	47	1.25
41912763--41912825	29	2.2	29	82	5	74	61	9	4	23	1.45
41914847--41914908	29	2.1	30	87	3	90	58	14	3	24	1.51
41924297--41924397	51	2.0	51	98	0	193	42	5	27	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41925434--41925466	15	2.1	16	88	5	50	15	0	21	63	1.30
41938003--41938378	199	1.9	199	92	1	628	33	21	15	28	1.94
41943926--41943959	10	3.5	10	84	8	52	35	0	2	61	1.11
41944041--41944188	12	13.2	12	68	23	58	64	1	2	32	1.14
41944097--41944209	19	5.8	19	68	8	75	62	2	1	32	1.19
41944005--41944230	78	2.9	79	89	7	340	61	3	2	32	1.23
41944175--41944207	10	3.4	10	83	8	50	63	3	0	33	1.10
41944266--41944325	29	2.0	30	96	3	113	33	16	23	26	1.96
41969915--41969979	34	1.9	33	84	12	87	30	1	4	63	1.24
41969956--41969986	9	3.4	9	95	0	53	25	0	3	70	1.02
41969954--41970003	18	2.7	19	78	9	59	26	0	6	68	1.13
41970199--41970239	18	2.3	18	80	16	50	46	9	0	43	1.36
41970757--41970801	23	2.0	23	100	0	90	44	26	0	28	1.55
41971215--41971290	31	2.5	31	78	4	82	50	5	3	40	1.44
41971337--41971362	11	2.4	11	100	0	52	92	0	0	7	0.39
41971912--41971974	26	2.4	27	78	7	67	58	4	1	34	1.29
41978296--41978408	10	12.0	10	67	30	54	28	2	3	65	1.23
41978296--41978407	18	6.1	17	71	18	66	27	2	3	66	1.22
41982833--41982865	16	2.1	16	94	0	57	39	0	3	57	1.14
41986199--41986271	21	3.5	21	92	3	112	30	17	31	20	1.96
41989807--41989906	10	10.5	10	72	10	75	67	1	2	30	1.09
41989808--41989850	19	2.2	20	91	4	70	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41989809--41989860	19	2.7	18	79	5	59	65	1	1	30	1.14
41989847--41989922	18	4.0	19	68	11	57	68	1	3	26	1.15
41990647--41990692	24	1.9	24	86	0	65	56	4	0	39	1.19
42006795--42006860	17	3.8	18	69	20	52	34	0	3	62	1.11
42007028--42007057	16	1.9	16	93	6	53	23	0	3	73	0.98
42011148--42011265	63	1.9	61	84	6	157	37	11	31	20	1.87
42011966--42011996	16	2.0	16	93	6	55	12	25	16	45	1.83
42017268--42017306	13	3.0	13	82	10	53	43	0	0	56	0.99
42017268--42017307	14	2.9	14	85	3	55	45	0	0	55	0.99
42017325--42017371	22	2.3	22	85	10	64	48	0	2	48	1.13
42017322--42017376	20	2.5	21	80	17	58	49	0	1	49	1.11
42017422--42017453	13	2.4	14	85	15	50	43	0	0	56	0.99
42022252--42022321	26	2.7	26	100	0	140	32	10	7	50	1.63
42027704--42027762	29	2.0	29	100	0	118	55	23	3	16	1.56
42037886--42037916	10	3.1	10	100	0	62	38	9	9	41	1.71
42042455--42042514	27	2.3	25	81	13	68	60	0	0	40	0.97
42042401--42042523	42	2.7	46	76	12	139	56	1	0	41	1.09
42044785--42044827	20	2.2	20	86	0	59	41	11	6	39	1.68
42045555--42045666	36	3.0	36	79	11	118	34	23	18	23	1.96
42045688--42045799	41	2.7	40	80	5	134	33	24	17	25	1.97
42046082--42046157	28	2.7	28	78	11	75	50	22	0	27	1.50
42047738--42047767	14	2.1	15	93	6	53	50	13	0	36	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42049794--42051393	635	2.5	635	98	0	3128	24	13	18	42	1.87
42058441--42058469	14	2.1	14	93	6	51	34	0	6	58	1.25
42058881--42058931	21	2.4	21	80	0	66	29	19	49	1	1.60
42059186--42059252	31	2.2	31	83	0	80	17	4	17	59	1.53
42059327--42059446	43	2.8	42	87	3	186	22	30	20	26	1.98
42066067--42066104	18	2.1	19	90	9	62	28	13	10	47	1.76
42068666--42068690	4	6.2	4	100	0	50	0	24	0	76	0.80
42069505--42069571	31	2.2	31	80	0	80	52	8	17	20	1.72
42086069--42086107	18	2.2	17	86	13	53	33	0	20	46	1.51
42086334--42086430	23	4.3	23	88	2	142	20	21	25	31	1.98
42086335--42086423	45	2.0	45	93	0	151	20	22	25	31	1.98
42093442--42093480	18	2.2	17	86	13	53	33	0	20	46	1.51
42093707--42093803	23	4.3	23	88	2	142	20	21	25	31	1.98
42093708--42093796	45	2.0	45	93	0	151	20	22	25	31	1.98
42094974--42096134	592	2.0	592	95	0	2079	31	14	20	34	1.92
42109027--42109065	20	2.0	20	100	0	78	41	15	10	33	1.81
42113790--42113835	21	2.1	22	88	4	67	34	2	4	58	1.30
42113966--42114071	34	2.9	37	70	16	85	40	2	3	52	1.34
42116115--42116154	20	2.0	20	85	0	53	30	7	5	57	1.48
42116608--42116664	20	2.7	21	86	5	71	33	1	3	61	1.23
42116779--42117029	87	2.9	86	83	7	310	31	11	9	47	1.72
42117180--42117365	91	2.0	95	81	5	218	45	8	12	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42118631--42118669	20	2.0	20	84	0	51	41	5	5	48	1.47
42118956--42119074	58	2.1	58	95	0	211	29	14	20	36	1.92
42122996--42123033	3	12.7	3	100	0	76	68	0	0	31	0.90
42123190--42123352	3	53.0	3	69	13	82	58	3	7	30	1.42
42123605--42123676	3	23.7	3	74	13	58	65	1	4	29	1.20
42123605--42123677	20	3.8	19	82	8	85	64	1	5	28	1.24
42123612--42123676	10	6.7	10	72	18	57	67	1	3	27	1.14
42125306--42125440	67	2.0	67	92	0	225	25	22	22	29	1.99
42130157--42130360	102	2.0	102	98	0	390	27	20	25	25	1.99
42132771--42132946	71	2.5	70	86	3	221	28	14	22	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172