genome.fa.s10.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  127  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42335500--42335578	23	3.3	23	77	8	79	51	1	1	45	1.17
42335591--42335694	10	11.2	9	68	12	50	75	3	4	15	1.11
42339382--42339425	20	2.2	20	84	8	54	52	2	18	27	1.57
42340160--42340218	31	1.9	31	85	0	82	42	5	15	37	1.69
42344811--42344860	19	2.7	19	85	11	61	10	4	8	78	1.09
42349897--42349939	22	2.0	21	86	4	59	39	0	4	55	1.20
42352270--42352315	18	2.5	18	89	3	65	10	4	2	82	0.89
42352274--42352315	6	6.8	6	86	2	57	11	2	2	83	0.84
42352305--42352352	25	1.9	25	83	8	62	18	8	4	68	1.31
42352304--42352358	25	2.2	25	77	6	58	21	7	3	67	1.31
42355909--42355985	25	3.1	25	94	0	136	29	16	28	24	1.97
42355979--42356101	25	4.9	25	74	5	106	36	19	24	19	1.95
42355909--42356011	50	2.1	50	86	0	143	31	18	27	23	1.97
42362534--42362610	31	2.5	30	72	6	73	25	11	12	49	1.75
42362739--42363114	192	2.0	193	83	1	477	40	13	21	25	1.89
42367357--42367399	20	2.2	20	87	8	61	34	2	0	62	1.08
42369961--42370005	23	2.0	23	95	0	81	11	24	26	37	1.89
42370070--42370127	26	2.3	26	85	8	86	17	24	20	37	1.93
42376181--42376241	21	2.9	21	79	13	63	34	0	18	47	1.49
42376955--42377149	45	4.3	45	91	0	300	18	20	20	40	1.92
42377129--42377171	6	7.2	6	94	0	77	18	16	13	51	1.77
42377335--42377617	18	15.3	18	72	12	189	35	11	15	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42381294--42381976	317	2.1	320	82	5	848	27	16	25	30	1.97
42384183--42384211	14	2.0	15	93	6	51	44	0	6	48	1.29
42387782--42387835	28	1.9	28	85	7	74	35	11	3	50	1.56
42392095--42392125	14	2.3	13	94	5	53	16	0	0	83	0.64
42392094--42392128	13	2.7	13	87	12	54	22	0	0	77	0.78
42393706--42393767	24	2.6	24	84	0	70	29	16	11	43	1.82
42397251--42397313	31	2.0	31	96	0	117	42	9	23	23	1.83
42407609--42407640	8	4.0	8	100	0	64	12	0	0	87	0.54
42409506--42409624	32	3.8	32	83	9	154	41	11	9	37	1.74
42412541--42412622	42	2.0	42	92	0	137	37	18	9	34	1.84
42413877--42413939	30	2.1	30	96	0	117	23	3	15	57	1.53
42413877--42413956	30	2.7	30	86	5	83	23	3	15	57	1.54
42414060--42414089	11	2.7	11	89	0	51	66	0	0	33	0.92
42416514--42416548	11	3.0	12	91	8	63	48	0	0	51	1.00
42427229--42427311	44	1.9	44	85	2	114	22	6	7	63	1.42
42429972--42430017	20	2.3	21	82	14	62	26	17	28	28	1.98
42436600--42436659	29	2.0	30	83	3	77	28	6	13	51	1.66
42438961--42439003	14	2.9	14	86	6	50	62	6	2	27	1.33
42439033--42439101	31	2.3	31	89	2	104	52	7	17	23	1.69
42445208--42445232	12	2.1	12	100	0	50	60	16	16	8	1.58
42449601--42449648	20	2.4	20	82	0	60	41	2	0	56	1.11
42449763--42449815	28	2.1	27	83	16	69	64	5	3	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42452249--42452307	20	2.9	21	72	10	59	33	0	8	57	1.29
42453065--42453118	27	2.0	27	96	0	99	33	24	14	27	1.94
42457535--42457631	48	2.0	48	100	0	194	18	18	21	41	1.91
42467850--42467916	12	5.5	12	70	20	50	64	0	2	32	1.09
42468017--42468041	12	2.1	12	100	0	50	60	0	8	32	1.26
42468082--42468127	11	3.9	11	78	15	56	69	0	2	28	1.00
42468077--42468161	25	3.4	25	80	6	93	64	1	2	31	1.13
42474632--42474667	18	2.1	18	89	5	56	5	25	0	69	1.10
42474744--42474811	23	2.8	23	75	16	59	51	2	2	42	1.32
42474744--42474788	18	2.4	19	88	3	65	51	4	0	44	1.21
42476390--42476420	16	1.9	16	93	0	53	48	6	12	32	1.67
42479535--42479580	24	1.9	24	95	0	83	28	0	0	71	0.86
42480826--42480852	11	2.5	11	100	0	54	33	0	0	66	0.92
42483314--42483345	15	2.1	16	88	11	50	65	3	6	25	1.31
42499653--42499696	18	2.5	18	85	3	63	50	2	2	45	1.27
42500367--42500432	33	2.0	33	96	0	123	53	6	6	34	1.51
42500570--42500634	31	2.1	31	82	5	78	49	10	4	35	1.58
42516538--42516570	13	2.5	13	95	0	57	45	6	24	24	1.75
42522085--42522142	22	2.6	23	78	10	66	22	17	15	44	1.86
42526291--42526361	20	3.6	19	79	9	63	53	5	4	36	1.44
42526318--42526366	19	2.6	19	84	9	57	53	4	2	40	1.32
42526357--42526403	19	2.6	18	86	6	67	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42526357--42526398	19	2.3	19	91	4	68	52	0	0	47	1.00
42526394--42526434	20	2.0	21	85	4	57	68	2	0	29	1.03
42526730--42526769	21	1.9	21	90	10	64	55	10	12	22	1.67
42529429--42529712	48	5.9	48	71	5	216	25	28	18	27	1.98
42529430--42529713	96	3.0	96	84	1	356	26	28	18	27	1.98
42530270--42530326	30	1.9	30	100	0	114	42	17	3	36	1.67
42531969--42532047	41	2.0	40	85	7	106	21	12	29	36	1.90
42539078--42539155	41	1.9	41	91	0	129	17	10	33	38	1.84
42541170--42541214	22	2.0	22	100	0	90	40	20	4	35	1.72
42545936--42545974	17	2.2	18	86	4	53	71	5	0	23	1.05
42546072--42546106	17	2.0	18	88	5	54	65	11	2	20	1.37
42550783--42550867	27	3.2	26	77	9	73	69	1	4	24	1.15
42551768--42551806	6	6.5	6	90	0	51	20	23	12	43	1.86
42555232--42555453	111	2.0	111	100	0	444	31	16	21	30	1.95
42565484--42565553	4	17.5	4	100	0	140	50	24	0	25	1.50
42566351--42566407	30	1.9	30	85	7	80	21	31	28	19	1.97
42571750--42571793	22	2.0	22	83	16	56	59	0	0	40	0.98
42574862--42574978	55	2.1	55	93	1	207	42	11	2	42	1.55
42574873--42574962	29	3.2	29	66	15	89	41	11	2	45	1.52
42590229--42590527	153	1.9	153	82	7	365	23	25	16	34	1.95
42596716--42596781	31	2.1	31	85	0	87	48	16	6	28	1.70
42602861--42602933	37	2.0	37	97	0	137	42	5	23	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42603544--42603582	20	2.0	20	94	0	69	61	5	12	20	1.50
42605117--42605152	3	12.3	3	88	5	56	36	0	0	63	0.94
42605228--42605296	33	2.1	33	84	10	88	53	1	1	43	1.18
42605904--42605937	17	1.9	18	88	5	52	41	0	23	35	1.55
42607873--42607910	17	2.2	17	86	9	51	31	10	2	55	1.48
42609462--42609514	21	2.5	21	87	0	70	16	24	26	32	1.97
42614807--42615037	112	2.0	113	90	3	367	38	9	15	36	1.80
42616355--42616405	20	2.7	19	76	8	50	25	15	3	54	1.58
42618199--42618249	11	4.5	11	79	11	50	84	1	7	5	0.85
42618202--42618246	15	2.9	15	86	3	63	84	2	8	4	0.84
42618194--42618250	24	2.3	24	84	6	78	82	1	7	8	0.91
42618866--42618931	23	3.0	21	82	8	62	34	6	1	57	1.33
42619051--42619096	23	2.0	23	84	12	60	32	2	4	60	1.28
42619057--42619113	28	2.1	28	90	3	89	36	0	5	57	1.21
42619247--42619288	21	2.0	21	85	0	57	38	9	7	45	1.64
42623886--42624101	75	2.9	73	88	1	297	27	16	24	31	1.96
42623886--42624101	73	2.9	73	86	4	283	27	16	24	31	1.96
42624100--42624255	74	2.1	74	90	4	244	30	13	18	37	1.89
42624265--42624428	79	2.1	78	86	1	220	28	17	21	32	1.96
42641836--42641868	13	2.6	13	90	4	50	33	0	0	66	0.92
42642979--42643044	34	2.0	34	96	3	125	42	16	9	31	1.80
42648742--42648851	26	4.2	26	94	2	186	35	4	23	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42652885--42652949	29	2.2	28	81	7	76	38	7	13	40	1.74
42655069--42655113	2	22.5	2	81	0	54	44	4	4	46	1.43
42656741--42656765	10	2.5	10	100	0	50	60	0	0	40	0.97
42658259--42658301	12	3.5	12	79	17	52	48	0	0	51	1.00
42659683--42659716	17	2.0	17	100	0	68	11	0	0	88	0.52
42670162--42670217	19	2.6	21	70	18	53	46	1	5	46	1.36
42683414--42683452	15	2.7	16	81	18	50	46	0	0	53	1.00
42683538--42683585	18	2.6	18	80	16	53	47	0	0	52	1.00
42686791--42686816	6	4.3	6	100	0	52	46	15	19	19	1.85
42687737--42687774	8	4.8	8	83	9	51	39	0	2	57	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172