genome.fa.s10.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  153  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50127953--50128023	6	11.7	6	76	13	65	78	4	4	12	1.03
50134726--50134797	3	24.0	3	81	5	83	27	5	1	65	1.23
50136345--50136400	6	9.3	6	88	0	76	16	3	3	76	1.06
50136357--50136413	18	3.1	18	82	7	71	14	5	3	77	1.08
50136345--50136426	36	2.3	35	81	12	94	17	6	4	71	1.24
50139934--50139959	7	3.7	7	100	0	52	15	0	15	69	1.20
50141981--50142029	20	2.4	21	76	10	57	40	10	12	36	1.77
50143536--50143576	21	2.0	21	100	0	82	53	7	0	39	1.29
50146353--50146389	18	2.1	18	90	5	58	27	2	10	59	1.44
50155559--50155624	22	3.0	23	74	26	70	42	4	0	53	1.21
50155555--50155630	29	2.7	27	77	18	77	44	3	0	51	1.20
50156606--50156638	17	2.1	16	88	11	50	30	0	0	69	0.88
50156685--50156743	21	2.8	22	80	7	61	22	0	8	69	1.15
50156714--50156762	26	2.0	24	88	8	71	30	0	6	63	1.19
50156968--50157054	41	2.1	41	97	2	167	40	13	8	37	1.75
50165286--50165318	13	2.6	13	90	4	50	39	0	12	48	1.40
50170823--50170861	6	6.5	6	90	0	60	15	5	0	79	0.90
50174574--50174651	26	2.9	26	77	11	86	39	17	0	42	1.50
50174574--50174651	27	2.9	28	77	9	90	39	17	0	42	1.50
50178779--50178881	38	2.7	38	83	0	125	16	21	28	33	1.95
50178813--50178891	38	2.1	38	87	0	113	16	21	27	34	1.95
50178831--50179016	60	3.0	60	82	6	230	17	18	28	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50178927--50178975	24	2.1	23	88	7	73	20	18	26	34	1.95
50178861--50178975	22	5.4	22	71	17	82	19	17	26	36	1.94
50178960--50179037	40	2.0	40	89	0	120	15	16	32	35	1.90
50182292--50182344	24	2.2	24	89	0	79	39	3	7	49	1.49
50185975--50186026	24	2.2	24	85	0	68	34	5	7	51	1.54
50188400--50188514	42	2.8	42	82	1	133	48	18	6	26	1.71
50194821--50194870	23	2.2	23	85	7	66	66	6	2	26	1.26
50196760--50196815	29	1.9	29	85	0	76	33	10	1	53	1.46
50197014--50197040	10	2.7	10	100	0	54	48	0	7	44	1.31
50197034--50197059	13	2.0	13	100	0	52	30	0	0	69	0.89
50197718--50198052	109	3.1	107	92	2	546	29	17	18	34	1.94
50200239--50200497	107	2.4	108	88	2	389	29	16	18	35	1.93
50203361--50203393	7	4.7	7	100	0	66	27	0	0	72	0.85
50204022--50204059	17	2.4	16	86	8	51	42	0	2	55	1.14
50204081--50204137	21	2.7	20	72	20	53	50	0	1	47	1.11
50210045--50210093	16	2.9	18	76	14	59	53	10	0	36	1.35
50210049--50210112	33	1.9	34	84	9	87	51	7	3	37	1.47
50210510--50210549	19	2.1	19	86	9	55	30	2	0	67	1.04
50212251--50212651	67	6.0	67	87	0	570	37	2	18	42	1.63
50212251--50212634	134	2.9	134	94	0	653	36	2	18	42	1.63
50212858--50212936	23	3.5	22	75	14	63	24	26	17	31	1.97
50213106--50213170	20	3.3	19	76	4	67	35	4	16	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50214849--50214907	27	2.2	27	81	6	66	23	20	15	40	1.90
50215049--50215212	58	2.8	58	78	2	177	27	24	15	32	1.95
50223375--50223428	20	2.7	19	83	16	65	66	1	1	29	1.12
50226390--50226434	22	2.0	22	91	8	74	24	20	8	46	1.78
50226565--50226598	17	1.9	18	88	5	52	52	2	0	44	1.16
50228931--50228988	23	2.6	23	81	10	66	44	17	1	36	1.59
50230423--50230454	15	2.1	15	100	0	64	62	0	12	25	1.30
50230876--50230958	41	2.0	41	90	0	130	37	18	6	38	1.75
50233097--50233160	22	3.0	22	84	4	69	12	34	25	28	1.92
50244201--50244259	21	2.8	20	80	7	73	37	23	5	33	1.77
50246536--50246701	56	3.0	56	91	3	266	35	16	12	34	1.87
50251769--50254079	953	2.4	958	91	2	3765	34	22	13	30	1.92
50254546--50254590	20	2.2	20	88	4	63	51	13	0	35	1.41
50263413--50263465	24	2.2	23	83	12	63	54	0	1	43	1.11
50268558--50268650	18	5.2	18	84	5	125	26	22	17	33	1.96
50274502--50274698	98	2.0	98	93	0	340	37	23	10	28	1.87
50276442--50276483	17	2.5	17	88	0	57	2	16	38	42	1.61
50282447--50282511	7	8.9	7	72	21	53	72	0	4	23	1.03
50282447--50282514	17	4.0	17	77	14	70	72	0	4	23	1.03
50286802--50286843	22	1.9	22	90	0	66	35	7	21	35	1.81
50289010--50289106	48	2.0	48	97	0	185	39	4	27	28	1.75
50300535--50300575	21	2.0	21	81	18	50	31	19	26	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50303414--50303444	16	1.9	16	93	0	53	19	19	35	25	1.95
50310245--50310285	21	2.0	21	90	0	64	19	29	21	29	1.98
50314738--50314771	16	2.1	16	88	0	50	50	14	17	17	1.79
50325267--50325319	23	2.4	22	76	20	56	9	18	1	69	1.25
50327844--50328335	114	4.3	112	78	10	451	30	17	23	28	1.97
50328479--50328514	18	2.0	18	89	10	56	25	0	5	69	1.10
50333964--50334127	72	2.3	72	84	4	206	55	13	5	25	1.59
50335494--50335525	15	2.2	14	94	5	55	53	12	28	6	1.62
50337668--50337699	7	4.6	7	96	0	55	53	15	31	0	1.43
50338035--50338137	41	2.5	41	76	4	102	35	28	18	17	1.94
50338182--50338303	40	3.1	39	82	5	154	22	18	19	38	1.93
50339004--50339028	13	1.9	13	100	0	50	16	24	40	20	1.91
50339544--50339891	44	7.5	44	67	18	181	32	19	20	27	1.97
50339483--50340049	94	6.1	94	70	11	286	32	18	21	28	1.97
50339732--50340049	92	3.4	92	76	6	302	32	19	21	27	1.97
50342740--50342864	35	3.4	35	67	21	94	31	16	20	32	1.95
50347017--50347078	30	2.0	31	84	9	83	24	3	38	33	1.71
50347807--50347845	10	3.9	10	80	12	53	20	7	2	69	1.26
50350829--50350863	2	17.5	2	93	0	61	51	2	0	45	1.16
50351638--50351723	38	2.3	36	84	4	109	19	10	26	43	1.84
50352377--50352445	21	3.5	20	70	5	52	11	11	39	37	1.78
50353118--50353214	39	2.5	39	89	1	149	49	20	8	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50355413--50355482	28	2.5	28	77	13	81	57	4	7	31	1.45
50357211--50357382	6	28.0	6	72	9	87	54	16	8	20	1.69
50357219--50357394	12	14.8	12	72	9	119	53	15	9	21	1.69
50357331--50357394	6	10.7	6	80	6	58	57	12	9	20	1.62
50359025--50359069	21	2.1	21	87	0	63	42	8	8	40	1.67
50364128--50364190	30	2.1	30	96	0	117	23	3	15	57	1.53
50364768--50364797	15	2.0	15	93	0	51	50	0	10	40	1.36
50368736--50368800	4	15.5	4	80	17	71	24	3	0	72	0.99
50368735--50368800	21	3.1	21	81	14	82	24	3	0	72	0.98
50368733--50368808	18	4.2	19	73	21	74	25	3	0	71	1.03
50369827--50369887	16	3.8	16	76	20	56	73	1	1	22	1.01
50369827--50369873	10	4.7	10	79	7	51	74	2	0	23	0.93
50370436--50370470	15	2.4	15	90	4	54	48	0	8	42	1.33
50375182--50375278	33	2.8	35	72	20	89	50	1	3	45	1.24
50376340--50376393	27	2.0	27	100	0	108	40	7	11	40	1.69
50378051--50378143	25	3.8	24	71	8	71	31	21	25	21	1.98
50378603--50378651	21	2.5	20	83	6	55	44	14	0	40	1.45
50380526--50380567	22	2.0	21	86	9	59	26	0	2	71	0.98
50380643--50380873	76	3.0	76	87	3	336	27	8	10	53	1.63
50381455--50381488	14	2.4	14	90	9	52	32	44	0	23	1.54
50381488--50381528	21	2.0	20	85	4	55	39	41	0	19	1.52
50381519--50381560	14	2.9	14	82	6	57	35	35	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50381515--50381561	15	3.3	15	82	8	62	40	31	0	27	1.57
50381747--50381816	15	4.8	15	74	13	65	35	42	0	21	1.53
50382113--50382643	114	4.7	113	82	5	644	26	25	22	25	2.00
50383548--50383587	20	2.0	20	90	0	62	47	2	2	47	1.29
50384281--50384330	23	2.2	23	85	7	75	60	2	2	36	1.20
50407357--50407463	57	1.9	56	82	5	135	42	15	5	36	1.71
50416725--50416784	20	3.0	21	72	22	65	56	0	0	43	0.99
50417592--50417635	19	2.3	19	88	11	63	68	0	0	31	0.90
50417592--50417636	20	2.3	19	84	3	63	68	0	0	31	0.89
50418953--50419168	108	2.0	108	98	0	414	37	20	14	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172