genome.fa.s10.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  157  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51419194--51419290	42	2.3	41	78	16	99	53	1	3	42	1.23
51419264--51419304	22	2.0	21	85	9	57	63	0	0	36	0.95
51419312--51419388	24	3.3	23	71	12	59	64	3	1	29	1.19
51419367--51419400	15	2.3	15	90	10	52	67	0	0	32	0.91
51422115--51422196	43	1.9	43	89	0	128	28	25	20	25	1.99
51423772--51423809	17	2.2	17	90	0	58	31	5	28	34	1.80
51423797--51423832	17	2.1	17	89	0	54	27	5	22	44	1.75
51429561--51429600	20	2.0	20	95	0	71	45	17	20	17	1.86
51433717--51433763	21	2.2	22	92	3	78	21	19	38	21	1.94
51436807--51436853	21	2.2	22	92	3	78	21	19	38	21	1.94
51440017--51440063	21	2.2	22	92	3	78	21	19	38	21	1.94
51443227--51443273	21	2.2	22	92	3	78	21	19	38	21	1.94
51446437--51446483	21	2.2	22	92	3	78	21	19	38	21	1.94
51449647--51449693	21	2.2	22	92	3	78	21	19	38	21	1.94
51463050--51463091	20	2.0	20	86	4	57	50	4	2	42	1.36
51479250--51479323	39	1.9	39	84	13	100	56	4	2	36	1.32
51487117--51487176	18	3.3	18	73	19	54	55	1	3	40	1.27
51487130--51487176	17	2.8	16	78	18	51	53	2	4	40	1.32
51487412--51487449	18	2.1	18	90	9	60	60	5	5	28	1.40
51489979--51490021	18	2.4	18	80	0	50	58	0	0	41	0.98
51490039--51490095	19	3.1	19	82	7	64	36	0	8	54	1.32
51490179--51490241	23	2.7	23	78	9	67	42	17	1	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51496545--51496609	33	2.0	33	96	0	121	26	16	10	46	1.80
51501401--51501554	52	2.9	52	80	6	168	31	26	16	25	1.96
51506860--51506912	25	2.1	26	86	10	74	41	16	3	37	1.67
51507779--51507839	26	2.3	26	88	0	86	40	16	18	24	1.90
51513944--51513983	21	1.9	21	89	0	62	42	10	17	30	1.82
51520377--51520418	21	2.0	21	86	4	59	21	23	21	33	1.97
51521653--51521757	34	3.2	34	89	9	173	56	16	4	22	1.59
51521661--51521757	30	3.1	30	92	5	149	56	16	4	22	1.57
51521787--51521829	22	2.0	22	85	0	59	55	11	11	20	1.66
51526835--51526868	15	2.3	15	89	0	50	58	8	14	17	1.61
51527872--51527907	9	4.0	9	89	10	56	88	11	0	0	0.50
51527875--51527900	11	2.4	11	100	0	52	92	7	0	0	0.39
51528222--51528262	16	2.6	16	84	0	55	82	2	0	14	0.76
51532919--51533065	43	3.4	43	85	2	188	31	25	14	27	1.95
51542306--51542392	40	2.2	40	82	0	102	41	17	6	34	1.76
51543090--51543120	16	2.0	15	93	6	53	0	29	0	70	0.87
51543471--51543531	24	2.5	23	80	15	61	49	4	0	45	1.23
51543479--51543558	35	2.4	34	85	8	101	50	5	0	45	1.23
51545847--51545883	12	3.2	12	96	3	67	8	43	0	48	1.32
51545921--51545945	3	8.3	3	100	0	50	0	36	0	64	0.94
51555915--51555953	21	1.9	20	94	5	69	35	5	10	48	1.59
51557453--51557491	17	2.3	17	86	8	53	17	10	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51557543--51557571	13	2.2	13	100	0	58	68	0	0	31	0.89
51557543--51557595	15	3.9	14	80	20	51	71	3	0	24	1.02
51557681--51557715	11	3.2	11	88	11	54	0	54	0	45	0.99
51558242--51558284	11	3.9	11	81	0	50	34	0	4	60	1.17
51558342--51558412	29	2.6	25	74	20	63	40	7	2	49	1.45
51560751--51560819	23	3.0	22	79	12	77	40	4	1	53	1.30
51572248--51572298	18	2.8	17	80	16	57	62	1	0	35	1.06
51572935--51572982	17	2.9	17	82	14	57	31	0	2	66	1.03
51575865--51575919	22	2.5	22	82	8	67	47	7	7	38	1.59
51576034--51576087	3	17.7	3	81	11	56	62	3	0	33	1.12
51576054--51576096	12	3.6	12	87	0	59	65	6	2	25	1.30
51576141--51576186	17	2.8	17	77	9	51	63	0	4	32	1.14
51576259--51576352	3	30.3	3	72	12	66	58	3	6	31	1.39
51576377--51576409	16	2.1	16	88	5	50	66	0	0	33	0.92
51576949--51576994	20	2.3	20	85	7	58	58	0	41	0	0.98
51578382--51578410	14	2.0	15	93	6	51	48	6	31	13	1.69
51578402--51578540	73	1.9	73	93	0	242	30	25	17	27	1.97
51578229--51578577	178	2.0	178	93	2	603	28	21	17	32	1.96
51578553--51578603	24	2.1	24	88	3	75	39	3	17	39	1.68
51578743--51578966	72	3.1	71	84	5	279	33	19	16	30	1.94
51578959--51579022	33	2.0	31	87	6	92	43	7	12	35	1.71
51579000--51579160	72	2.2	72	88	3	234	36	16	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51588356--51588413	30	1.9	30	89	0	89	41	3	24	31	1.71
51593088--51593129	19	2.4	19	80	11	54	59	2	0	38	1.10
51593443--51593482	9	4.4	9	93	0	53	65	5	2	27	1.27
51593419--51593473	3	17.7	3	78	14	58	63	1	0	34	1.05
51593645--51594024	3	124.3	3	70	17	218	59	3	5	31	1.36
51593661--51593842	75	2.4	75	96	0	339	59	2	5	32	1.35
51593967--51594019	22	2.3	23	90	3	81	62	7	3	26	1.39
51593732--51594074	179	1.9	176	90	4	533	60	4	4	30	1.34
51594050--51594082	16	2.1	16	88	5	50	66	0	0	33	0.92
51595423--51595461	20	2.0	19	85	14	53	43	2	2	51	1.29
51596673--51596892	21	10.5	21	76	5	176	19	19	13	47	1.82
51596673--51596895	42	5.3	42	80	3	243	19	19	13	47	1.83
51605326--51605357	16	2.0	16	100	0	64	37	6	18	37	1.76
51610501--51610560	30	2.0	30	96	0	111	68	20	8	3	1.30
51615910--51615970	17	3.8	17	78	18	60	36	6	3	54	1.43
51625300--51625357	15	3.8	15	88	2	89	51	12	0	36	1.39
51626627--51626719	5	18.4	5	98	1	177	59	0	0	40	0.98
51629149--51629178	14	2.1	14	93	0	51	23	6	3	66	1.30
51629106--51629659	87	6.6	87	80	7	541	29	15	19	35	1.93
51629440--51629704	79	3.4	75	79	6	246	33	16	18	30	1.94
51629940--51630028	30	3.0	29	83	6	115	28	25	3	42	1.71
51630272--51630315	15	2.7	17	82	10	65	63	11	6	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51631066--51631126	17	3.8	17	78	18	60	36	6	3	54	1.43
51631187--51631291	57	1.9	58	81	12	134	35	3	4	56	1.39
51641467--51641674	58	3.6	56	71	16	174	34	18	19	27	1.95
51641418--51641674	116	2.2	118	91	2	419	35	18	17	27	1.94
51645113--51645436	26	12.4	24	72	16	145	30	5	3	60	1.35
51645292--51645428	55	2.5	55	83	7	161	27	5	4	63	1.34
51645293--51645441	27	5.4	28	67	20	75	25	5	4	65	1.32
51652146--51652181	14	2.6	14	86	0	54	41	11	11	36	1.76
51658412--51658468	19	2.8	20	76	10	55	35	0	7	57	1.26
51659364--51659412	17	2.9	17	90	0	71	32	16	12	38	1.86
51661088--51661149	31	2.0	31	90	0	97	35	11	9	43	1.73
51664419--51664445	7	3.9	7	100	0	54	14	14	11	59	1.62
51674148--51674174	2	13.5	2	100	0	54	48	0	0	51	1.00
51678240--51678287	21	2.5	18	78	18	60	50	2	0	47	1.12
51678248--51678287	21	1.9	21	94	0	71	50	2	0	47	1.14
51681466--51681556	25	3.7	25	73	14	82	54	5	5	34	1.46
51681546--51681570	10	2.5	10	100	0	50	52	8	0	40	1.31
51681552--51681597	23	2.0	23	84	16	60	58	8	0	32	1.28
51681797--51681850	23	2.3	24	83	3	65	51	5	7	35	1.53
51681817--51681960	22	6.4	21	75	16	96	57	5	6	30	1.46
51682115--51682215	15	6.7	14	73	16	78	55	7	1	34	1.40
51682316--51682351	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51685188--51685238	17	2.9	17	75	13	50	64	1	0	33	1.05
51706883--51706965	42	2.0	42	97	0	157	44	6	19	30	1.74
51706890--51706957	20	3.3	20	69	15	57	45	5	19	29	1.73
51711402--51711442	21	2.0	21	90	0	64	36	12	26	24	1.91
51716408--51716434	4	6.8	4	100	0	54	25	22	0	51	1.48
51734868--51734898	2	15.5	2	100	0	62	51	0	48	0	1.00
51739694--51739727	17	2.1	16	89	10	52	41	0	11	47	1.40
51741723--51741756	11	3.0	11	86	4	50	32	0	32	35	1.58
51751017--51751051	16	2.2	16	100	0	70	31	22	20	25	1.98
51757323--51757372	25	2.0	25	84	7	66	52	2	4	42	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172