genome.fa.s10.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  62  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20306808--20307737	50	18.6	50	94	1	1566	24	16	29	29	1.97
20310764--20310828	15	4.4	14	78	16	69	10	10	12	66	1.46
20312947--20313882	101	9.3	101	97	0	1712	25	19	25	28	1.99
20331216--20331359	40	3.6	40	86	5	184	24	28	22	25	1.99
20332320--20332514	98	2.0	98	98	0	381	46	20	12	21	1.83
20335933--20336110	27	6.6	27	82	3	178	29	28	15	26	1.96
20342676--20342797	43	2.9	42	80	7	140	31	18	22	27	1.97
20342881--20342926	20	2.3	20	80	0	56	30	4	36	28	1.76
20345488--20345710	39	5.7	40	85	8	266	25	22	27	24	2.00
20345488--20345710	79	2.8	81	84	9	282	25	22	27	24	2.00
20345488--20345743	79	3.3	79	81	10	217	26	21	27	24	1.99
20353396--20353580	79	2.3	81	84	7	236	24	22	27	25	2.00
20353397--20353580	40	4.6	40	83	9	216	24	22	27	25	2.00
20353397--20353613	79	2.7	79	81	7	201	25	22	27	24	2.00
20357875--20357985	45	2.5	45	83	2	143	27	12	21	38	1.89
20361397--20361510	27	4.2	27	82	3	115	37	21	23	17	1.94
20361397--20361510	55	2.1	53	82	9	133	37	21	23	17	1.94
20366139--20366196	27	2.2	27	93	3	100	12	24	24	39	1.89
20369671--20369901	40	5.8	40	88	2	313	24	23	28	23	2.00
20371384--20371416	12	2.8	12	95	0	57	36	27	36	0	1.57
20373524--20373654	66	2.0	66	92	0	217	28	11	9	50	1.70
20376864--20376978	49	2.3	49	82	2	133	21	18	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20384225--20384313	36	2.5	36	94	1	153	22	3	25	48	1.66
20384652--20384734	42	2.0	42	100	0	166	25	21	26	26	2.00
20387369--20387546	27	6.6	27	83	3	205	26	15	28	29	1.96
20387370--20387525	82	1.9	81	88	3	233	26	15	28	29	1.96
20387366--20387546	82	2.2	81	83	2	229	27	15	27	29	1.96
20395557--20395734	27	6.6	27	83	3	205	26	15	28	29	1.96
20395558--20395713	82	1.9	81	88	3	233	26	15	28	29	1.96
20395554--20395734	82	2.2	81	83	2	229	27	15	27	29	1.96
20398746--20398802	27	2.1	27	87	6	80	15	21	52	10	1.72
20398919--20399032	50	2.3	51	76	8	119	59	0	38	0	1.09
20399451--20399486	17	2.1	17	89	0	54	25	2	2	69	1.15
20399597--20399820	110	2.0	112	87	3	328	33	4	7	55	1.47
20401865--20401971	33	3.2	33	73	5	108	20	40	15	23	1.91
20401864--20402021	66	2.4	66	81	2	174	22	37	15	24	1.92
20402390--20402609	64	3.5	64	96	1	390	45	8	6	40	1.61
20405451--20405488	9	4.2	9	83	12	51	0	26	0	73	0.83
20405451--20405488	18	2.1	19	95	5	69	0	26	0	73	0.83
20405565--20405660	27	3.6	27	94	0	156	22	28	25	23	2.00
20408466--20408666	99	2.0	99	96	0	366	23	21	14	40	1.90
20409833--20410053	91	2.4	92	84	3	277	33	10	15	39	1.82
20412836--20412915	32	2.4	33	75	8	83	42	15	8	33	1.77
20427290--20427397	26	4.2	26	93	0	189	32	7	24	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20429723--20430127	45	9.0	45	86	1	553	22	19	28	29	1.98
20434664--20434798	69	1.9	71	83	5	177	42	17	9	29	1.81
20441552--20441619	31	2.3	31	84	5	86	41	5	5	47	1.52
20441552--20441620	30	2.3	31	85	5	88	40	5	5	47	1.51
20443251--20443295	17	2.6	17	85	0	54	40	17	6	35	1.76
20446085--20446220	47	2.7	49	78	10	150	26	16	23	33	1.96
20450862--20451037	46	3.8	46	77	8	187	27	19	31	21	1.98
20450872--20451128	46	5.5	45	73	9	149	29	19	29	21	1.98
20450867--20451128	140	1.9	140	81	4	323	29	19	29	22	1.98
20453445--20453530	7	10.4	8	71	21	54	36	4	0	59	1.18
20453827--20453864	16	2.4	16	86	4	51	26	0	5	68	1.11
20458075--20458299	40	5.6	40	94	1	389	27	27	22	22	1.99
20468380--20468896	44	11.8	43	88	3	705	29	16	27	26	1.97
20470483--20470593	12	9.1	12	71	15	59	36	6	0	56	1.31
20470483--20470593	7	14.9	7	68	20	57	36	6	0	56	1.31
20470483--20470573	30	3.2	29	76	15	84	37	5	0	57	1.22
20470483--20470564	12	5.9	14	76	18	66	37	3	0	58	1.16
20470483--20470559	10	7.5	10	71	14	50	37	3	0	58	1.17
20470857--20470937	6	12.5	6	75	19	51	18	1	3	76	1.00
20470852--20470897	17	2.5	19	82	13	60	23	2	2	71	1.08
20470861--20470938	15	5.3	15	72	7	52	17	1	3	76	1.00
20472381--20472406	13	2.0	13	100	0	52	30	23	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20479086--20479205	46	2.6	46	83	10	156	25	30	17	25	1.97
20479086--20479256	92	1.8	92	86	5	245	23	29	18	27	1.98
20486620--20486931	156	2.0	156	98	0	606	35	16	9	37	1.82
20493930--20494012	42	2.0	42	92	0	139	26	28	20	24	1.99
20493934--20494029	42	2.3	42	85	0	129	26	27	20	26	1.99
20495084--20495175	42	2.2	42	86	0	121	27	22	29	20	1.99
20502235--20502302	16	4.2	16	96	0	127	26	0	35	38	1.57
20502539--20502573	18	2.0	17	88	5	52	54	0	0	45	0.99
20502426--20502742	157	2.0	157	96	0	580	44	3	5	47	1.41
20502676--20502717	15	2.7	16	82	14	52	52	2	0	45	1.13
20502685--20502726	15	2.9	15	82	10	52	52	0	0	47	1.00
20502745--20502956	106	2.0	106	88	8	319	49	5	3	41	1.44
20502478--20502808	157	2.1	155	82	6	369	47	4	3	44	1.41
20502816--20502850	18	2.0	17	88	5	52	54	0	0	45	0.99
20502831--20502886	24	2.4	24	79	11	62	50	7	3	39	1.47
20502917--20502955	17	2.5	15	80	15	51	51	0	5	43	1.24
20502922--20502955	17	2.0	17	94	0	59	50	0	5	44	1.26
20505244--20505297	28	1.9	28	92	0	90	64	5	27	1	1.26
20506097--20506130	18	1.9	18	88	5	52	29	14	14	41	1.86
20507268--20507367	29	3.5	29	88	2	148	31	27	13	29	1.93
20507255--20507363	57	1.9	57	86	3	157	29	30	13	26	1.94
20515029--20515216	68	2.7	69	82	4	236	25	28	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20515027--20515242	69	3.1	69	82	4	256	23	28	16	31	1.96
20515251--20515381	45	3.0	44	78	11	142	22	24	14	38	1.91
20524624--20524682	29	2.0	29	93	0	100	27	6	18	47	1.74
20525398--20525671	46	5.8	45	73	14	144	30	20	26	22	1.98
20525399--20525713	48	6.6	48	74	11	190	29	19	26	23	1.98
20525398--20525711	97	3.3	96	79	7	279	29	19	27	23	1.98
20525545--20525671	49	2.6	49	81	8	143	29	22	26	21	1.99
20528692--20528733	20	2.1	20	95	0	75	28	7	9	54	1.59
20529538--20529620	35	2.3	35	89	2	121	45	27	9	16	1.79
20537265--20537398	68	2.0	69	87	1	198	22	27	16	33	1.95
20538812--20539117	47	6.5	47	71	10	169	23	28	20	28	1.99
20557355--20557413	29	2.0	29	96	0	109	27	6	16	49	1.71
20558124--20558252	46	2.9	43	86	9	152	30	17	28	23	1.97
20558182--20558443	141	1.9	138	83	7	341	27	19	27	24	1.99
20558320--20558436	49	2.4	49	80	7	132	30	22	25	21	1.98
20558863--20558931	34	2.0	34	97	0	129	43	2	26	27	1.69
20561498--20561539	20	2.1	20	95	0	75	28	7	9	54	1.59
20562344--20562427	35	2.4	35	93	2	141	44	28	11	15	1.82
20570078--20570213	69	2.0	68	83	4	166	22	26	17	33	1.96
20571718--20571984	47	5.8	46	72	11	163	23	28	19	27	1.99
20571718--20571984	94	2.9	93	83	6	312	23	28	19	27	1.99
20580838--20581301	48	9.7	48	74	8	298	25	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20580839--20581251	144	2.8	144	82	2	479	25	29	18	27	1.98
20580885--20581305	96	4.4	94	79	7	393	25	29	18	26	1.98
20580838--20581297	144	3.2	144	80	5	461	26	28	18	26	1.98
20585780--20585825	19	2.4	19	96	0	83	73	8	2	15	1.16
20591915--20591964	26	1.9	26	83	0	64	16	16	26	42	1.88
20592951--20593077	49	2.6	49	87	3	175	22	27	20	29	1.98
20592950--20593266	48	6.7	47	75	11	202	24	27	19	28	1.99
20596203--20596241	7	5.6	7	85	11	53	10	0	2	87	0.65
20596202--20596236	15	2.4	15	95	4	63	11	0	0	88	0.51
20599090--20599256	47	3.6	47	77	11	164	22	31	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172