genome.fa.s10.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  103  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34611436--34612253	31	26.4	31	99	0	1618	25	16	25	31	1.96
34614560--34614718	27	5.9	27	83	0	201	31	20	6	40	1.79
34614549--34614743	54	3.6	54	85	0	228	33	20	7	38	1.80
34614547--34614743	81	2.4	81	78	0	223	34	20	7	38	1.80
34614709--34614913	80	2.5	81	85	3	254	40	21	8	28	1.83
34614704--34615027	27	12.0	27	78	9	187	39	19	9	31	1.83
34615066--34615127	27	2.3	27	100	0	124	30	22	29	17	1.97
34615058--34615149	27	3.4	27	87	3	114	33	18	26	21	1.96
34615464--34615503	21	2.0	21	95	5	73	25	20	32	22	1.98
34615886--34615916	16	1.9	16	93	0	53	29	19	16	35	1.93
34615950--34616124	26	6.8	26	88	0	255	28	22	21	28	1.99
34616343--34616447	31	3.4	31	95	0	183	26	17	26	29	1.97
34617323--34617430	43	2.5	42	80	7	121	33	34	17	14	1.91
34617333--34617430	42	2.3	43	80	5	119	32	35	17	14	1.90
34621825--34623325	660	2.3	660	99	0	2957	32	23	13	30	1.93
34633411--34633503	43	2.2	43	84	3	116	26	15	23	34	1.94
34635190--34635220	16	1.9	16	93	0	53	45	6	19	29	1.75
34641536--34641708	46	3.7	46	75	14	185	22	19	27	31	1.98
34641533--34641703	93	1.8	93	92	2	290	22	19	28	30	1.98
34641932--34641969	19	2.0	20	85	15	53	36	0	23	39	1.55
34643491--34643639	43	3.5	42	79	11	135	26	18	24	31	1.97
34643491--34643629	42	3.2	43	83	7	158	26	17	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34647801--34647957	43	3.7	43	77	10	160	24	19	25	29	1.98
34658224--34658321	25	4.0	25	72	1	81	32	21	26	19	1.97
34665435--34665539	40	2.6	41	80	8	126	23	23	27	24	2.00
34666381--34666481	50	2.0	50	100	0	202	42	15	15	25	1.87
34669491--34669603	56	2.0	56	94	0	199	28	15	27	29	1.96
34669972--34670067	48	2.0	48	95	0	174	22	16	33	27	1.96
34673804--34674026	39	5.7	40	84	8	257	25	22	27	25	2.00
34673804--34674026	79	2.8	80	84	7	285	25	22	27	25	2.00
34673804--34674059	79	3.3	79	82	8	222	26	21	27	24	2.00
34677777--34677820	22	2.0	22	90	0	70	15	34	31	18	1.92
34681780--34681857	29	2.7	28	84	11	104	25	14	30	29	1.94
34681810--34682137	174	1.9	174	96	0	611	30	14	24	31	1.94
34683218--34683390	55	3.2	54	71	5	161	20	23	18	36	1.94
34686722--34686793	36	2.0	36	100	0	144	33	22	5	38	1.77
34687251--34687356	53	2.0	53	83	7	135	27	3	22	46	1.69
34687965--34688231	133	2.0	133	100	0	534	32	11	18	36	1.88
34690201--34690252	26	2.0	26	100	0	104	53	23	3	19	1.61
34692832--34692977	43	3.4	42	84	3	184	32	22	15	28	1.95
34693510--34693550	18	2.3	18	100	0	82	36	14	9	39	1.79
34697052--34697147	49	2.0	49	97	0	183	34	22	6	36	1.80
34698602--34698646	22	2.0	22	91	0	72	37	24	4	33	1.76
34713598--34713624	9	3.0	9	100	0	54	55	0	33	11	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34720973--34721025	26	2.0	26	96	0	97	22	26	13	37	1.91
34736262--34736460	51	3.9	51	93	1	319	32	13	24	29	1.94
34739675--34739715	21	1.9	22	85	5	57	41	14	0	43	1.45
34740291--34741505	607	2.0	607	100	0	2430	37	18	9	34	1.84
34743507--34743561	25	2.2	24	96	3	101	36	20	10	32	1.87
34748749--34748822	34	2.2	34	85	4	96	28	25	20	25	1.99
34749598--34749697	42	2.3	44	84	6	125	35	26	15	24	1.94
34749598--34749714	44	2.7	42	81	6	128	32	25	17	23	1.97
34753755--34753919	46	3.6	45	74	15	140	20	18	29	30	1.97
34759256--34759431	46	3.8	45	81	10	212	21	21	29	28	1.98
34759252--34759423	93	1.8	93	94	0	308	20	21	30	27	1.98
34768241--34768340	24	4.0	24	76	14	103	38	13	24	25	1.91
34768232--34768331	52	1.9	52	91	0	164	38	11	25	26	1.89
34768232--34768346	52	2.2	52	85	3	160	34	13	25	26	1.92
34768376--34768523	51	2.9	51	90	2	235	31	14	25	29	1.94
34774990--34775031	21	2.0	21	100	0	84	19	0	23	57	1.41
34778134--34778311	27	6.6	27	84	3	205	29	28	15	26	1.96
34778155--34778310	82	1.9	81	88	3	233	29	28	15	26	1.96
34786324--34786502	27	6.6	27	83	5	191	29	27	15	27	1.96
34786345--34786500	82	1.9	81	86	3	224	28	28	15	27	1.96
34787051--34787075	13	1.9	13	100	0	50	32	16	20	32	1.94
34791203--34791232	15	2.0	15	93	0	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34794408--34794568	61	2.6	61	85	4	225	26	21	24	27	1.99
34796998--34797291	38	7.0	38	71	20	194	30	25	13	29	1.94
34797013--34797211	85	2.3	85	92	0	344	31	25	14	29	1.94
34797128--34797256	48	2.7	48	87	3	181	31	24	14	30	1.95
34798531--34798555	13	1.9	13	100	0	50	44	16	8	32	1.76
34810605--34810683	20	4.0	20	66	9	54	10	21	13	54	1.69
34809907--34814780	730	6.7	734	82	5	5510	25	17	17	39	1.91
34814272--34814320	25	2.0	25	100	0	98	8	20	20	51	1.73
34815133--34815190	27	2.1	27	100	0	116	37	3	6	51	1.46
34816704--34816763	23	2.5	25	73	18	63	8	1	30	60	1.36
34816711--34816759	22	2.2	23	88	3	73	10	2	30	57	1.43
34816710--34816785	24	3.2	23	80	10	73	7	1	26	64	1.29
34819581--34819627	19	2.5	19	89	6	69	27	21	8	42	1.81
34822416--34822451	6	6.0	6	100	0	72	50	16	33	0	1.46
34823642--34823768	66	1.9	66	91	0	209	33	19	9	37	1.84
34823873--34824469	87	6.9	87	72	12	440	36	20	22	20	1.95
34823832--34824777	43	21.6	44	73	9	537	36	20	21	21	1.95
34823828--34824690	132	6.6	132	83	5	1025	36	20	21	20	1.95
34823828--34824690	261	3.3	261	89	2	1225	36	20	21	20	1.95
34824002--34824776	87	8.9	87	69	8	288	36	20	21	21	1.95
34824795--34824993	68	2.9	69	88	3	296	28	23	21	26	1.99
34825105--34825348	44	5.6	43	77	9	235	29	19	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34825046--34825340	88	3.4	88	73	10	305	29	20	23	26	1.98
34825136--34825404	132	2.0	132	97	0	511	31	18	23	26	1.98
34825046--34825407	44	8.2	43	76	7	214	30	19	23	25	1.98
34825865--34825941	23	3.4	22	80	8	75	9	3	28	58	1.47
34825897--34825941	21	2.1	22	88	8	67	6	4	26	62	1.39
34825858--34825941	22	3.7	22	75	12	71	8	3	28	59	1.43
34826269--34826354	3	29.3	3	73	19	60	29	3	1	66	1.16
34826269--34826358	18	4.7	18	77	13	83	30	3	1	65	1.16
34826560--34826616	17	3.1	19	78	14	66	31	0	7	61	1.23
34826701--34826730	12	2.5	12	94	0	51	46	6	0	46	1.29
34827825--34827865	14	3.1	14	73	20	52	58	0	0	41	0.98
34827814--34827889	35	2.2	35	81	11	86	55	2	0	42	1.14
34832129--34832169	22	1.9	21	90	5	64	43	0	4	51	1.23
34832157--34832236	26	3.1	27	70	15	78	55	2	0	42	1.13
34834386--34834417	9	3.6	9	95	0	55	6	21	0	71	1.07
34838399--34838425	8	3.4	8	100	0	54	33	51	0	14	1.43
34839664--34839715	27	1.9	27	88	0	77	48	13	7	30	1.71
34841537--34841659	46	2.7	46	90	0	210	27	26	23	21	1.99
34843062--34843118	27	2.1	27	93	0	96	33	17	19	29	1.95
34850785--34850838	27	2.0	27	92	3	92	35	16	14	33	1.90
34857599--34857627	8	3.6	8	100	0	58	34	51	0	13	1.42
34873839--34873873	13	2.7	13	90	0	52	25	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34887339--34887395	15	3.9	15	88	2	89	35	0	12	52	1.39
34887767--34887853	21	4.0	23	80	10	92	14	21	25	37	1.92
34889919--34889992	37	2.0	36	92	2	121	44	8	22	24	1.80
34895649--34895716	34	2.1	32	82	15	93	22	22	7	48	1.75
34901410--34901473	32	2.1	30	82	11	76	46	9	1	42	1.45
34907562--34907627	34	2.0	33	82	11	82	42	0	3	54	1.15
34907739--34907783	15	3.0	15	80	0	54	77	4	0	17	0.92
34912674--34912705	16	1.9	17	93	6	57	18	0	6	75	1.01
34916079--34916184	45	2.4	45	86	0	140	42	16	16	24	1.88
34917174--34917211	18	2.1	19	85	14	53	0	23	0	76	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172