genome.fa.s10.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  92  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30893905--30894231	73	4.5	73	78	5	329	26	22	14	36	1.93
30893905--30894188	36	7.8	35	75	12	186	25	22	14	36	1.93
30894032--30894095	34	1.9	33	90	3	101	28	25	18	28	1.98
30893920--30894188	145	1.9	144	82	3	344	26	21	15	36	1.93
30898552--30898582	6	5.2	6	96	0	53	35	16	29	19	1.93
30910225--30910303	37	2.1	37	85	0	104	25	30	20	24	1.98
30910422--30910623	47	4.3	47	88	1	280	27	29	9	32	1.89
30910422--30910623	93	2.2	94	87	0	280	27	29	9	32	1.89
30910777--30910852	23	3.3	23	63	23	59	30	31	5	32	1.80
30910778--30910868	47	1.9	47	97	0	173	28	31	7	31	1.85
30910525--30911033	256	2.0	256	95	1	914	34	22	10	33	1.88
30913544--30913672	46	2.8	46	93	0	213	29	28	21	20	1.98
30919794--30919961	43	3.9	43	75	6	126	29	14	23	32	1.95
30922526--30922556	6	5.2	6	96	0	53	35	16	29	19	1.93
30925966--30926014	25	2.0	25	83	0	62	36	14	20	28	1.92
30950470--30950550	20	4.4	19	76	18	75	44	0	2	53	1.14
30950818--30950860	17	2.4	18	80	11	52	62	6	0	30	1.21
30964126--30964165	21	2.0	20	85	14	55	30	22	12	35	1.91
30968973--30969156	40	4.6	40	84	9	241	24	23	27	25	2.00
30968973--30969156	80	2.3	80	88	5	266	24	23	27	25	2.00
30987051--30987085	17	2.0	18	94	5	63	48	5	11	34	1.63
30995894--30995986	47	2.0	47	93	0	159	41	12	11	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000557--31000629	37	2.0	36	94	0	119	30	24	17	26	1.97
31000829--31000949	43	2.8	43	75	5	120	27	20	24	27	1.99
31000839--31000931	42	2.2	43	80	5	109	30	19	22	27	1.98
31009102--31009288	40	4.7	40	91	0	311	29	20	28	21	1.98
31024474--31024562	30	3.0	30	77	8	92	57	14	16	11	1.65
31024474--31024553	15	5.4	15	77	7	83	58	12	17	11	1.62
31024485--31024562	15	5.2	15	74	9	61	56	14	16	12	1.68
31028679--31028791	27	4.2	28	85	3	135	31	21	27	19	1.97
31034785--31034863	15	5.4	15	80	7	83	59	13	16	10	1.60
31048383--31048542	43	3.8	42	77	11	164	28	14	24	32	1.94
31051330--31051385	20	2.8	20	91	2	85	33	32	17	16	1.92
31053700--31053729	10	3.1	10	95	4	53	33	0	20	46	1.51
31054064--31054127	32	2.0	33	81	9	78	39	17	20	23	1.92
31054560--31054623	32	2.0	33	81	9	78	23	20	17	39	1.92
31055640--31055784	50	2.9	50	75	8	141	33	15	18	32	1.92
31064944--31065028	26	3.4	25	87	9	111	27	22	22	28	1.99
31064957--31065052	26	3.8	26	90	2	126	26	22	23	27	2.00
31071492--31071564	34	2.1	34	82	0	83	23	23	23	30	1.99
31074287--31074329	21	2.0	21	86	8	61	32	4	44	18	1.71
31075992--31076213	40	5.6	40	87	5	308	27	26	22	23	1.99
31075992--31076213	80	2.8	80	91	0	347	27	26	22	23	1.99
31080087--31080244	43	3.7	43	83	2	176	26	19	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31097979--31098020	16	2.5	17	92	7	77	4	33	45	16	1.69
31127236--31127489	127	2.0	127	94	0	445	26	9	22	41	1.84
31138480--31138657	27	6.6	27	82	3	178	28	28	15	26	1.96
31138501--31138656	82	1.9	81	85	3	215	28	28	16	26	1.97
31138480--31138656	54	3.3	54	81	6	196	28	28	15	26	1.96
31153485--31153573	44	2.0	44	93	0	151	14	17	33	33	1.91
31160589--31160698	42	2.5	44	84	5	136	23	20	25	30	1.98
31160589--31160733	42	3.4	43	77	6	134	24	19	25	30	1.98
31164857--31164980	62	2.0	62	91	0	203	25	26	17	29	1.98
31170048--31170186	70	2.0	70	95	0	251	27	16	17	38	1.91
31171693--31171857	83	2.0	83	96	0	303	36	22	12	28	1.90
31175889--31176064	46	3.8	45	81	10	221	22	21	28	28	1.99
31175886--31176056	93	1.8	93	96	0	315	22	21	28	27	1.99
31177985--31178077	39	2.4	39	87	3	134	32	19	24	23	1.98
31178070--31178246	39	4.5	39	91	1	282	19	23	28	27	1.99
31185607--31186007	201	2.0	200	98	0	775	36	17	23	22	1.95
31186043--31186181	69	2.0	69	98	0	269	31	26	14	27	1.95
31186348--31186570	79	2.8	78	82	9	256	25	27	21	25	2.00
31186348--31186570	39	5.7	40	86	8	257	25	27	21	25	2.00
31189962--31190227	94	2.8	91	81	9	263	25	19	28	25	1.99
31192903--31193093	40	4.8	40	88	1	276	25	27	21	24	2.00
31194507--31194819	47	6.6	48	89	4	438	28	28	7	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31194507--31194819	96	3.3	96	92	0	495	28	28	7	35	1.85
31200858--31201041	40	4.6	41	82	12	208	26	22	27	24	2.00
31200910--31201074	79	2.1	79	82	8	194	27	21	27	24	1.99
31208810--31208994	79	2.3	81	83	9	229	24	22	27	25	2.00
31208811--31208994	40	4.6	39	81	11	189	25	22	27	25	2.00
31208811--31209027	79	2.7	79	80	9	194	26	22	27	24	2.00
31216918--31217143	54	4.2	54	85	4	294	26	12	20	40	1.88
31216918--31217146	81	2.8	81	84	1	298	26	12	20	40	1.88
31216918--31217146	27	8.5	27	84	1	262	26	12	20	40	1.88
31221035--31221135	43	2.3	43	84	5	141	32	16	15	34	1.91
31224751--31225016	94	2.8	92	80	10	265	25	19	28	25	1.98
31229208--31229378	27	6.3	27	79	6	141	29	28	15	25	1.96
31229208--31229378	54	3.1	54	79	5	175	29	28	15	25	1.96
31229519--31229696	27	6.6	27	81	3	178	29	28	15	26	1.96
31229068--31229689	311	2.0	311	98	0	1210	29	28	16	25	1.96
31229540--31229695	82	1.9	81	85	3	215	28	28	16	26	1.97
31235572--31235651	27	3.0	27	81	0	97	28	35	16	20	1.94
31235617--31235694	27	2.9	27	73	7	68	19	30	20	29	1.97
31236786--31236823	20	1.9	20	89	10	60	76	0	2	21	0.91
31236839--31236883	22	2.0	22	83	8	56	55	4	0	40	1.20
31237602--31237654	27	2.0	27	84	0	70	41	16	1	39	1.60
31243927--31243951	6	4.2	6	100	0	50	32	16	0	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31244289--31244331	13	3.3	13	78	12	52	30	20	0	48	1.50
31247204--31247378	46	3.8	46	77	13	178	29	29	20	20	1.98
31247211--31247383	93	1.9	93	90	0	274	28	30	20	20	1.98
31251582--31251614	15	2.2	15	100	0	66	24	6	6	63	1.40
31252678--31252852	46	3.8	46	77	13	196	28	29	21	20	1.98
31252685--31252857	93	1.9	93	92	0	292	27	30	21	21	1.98
31252681--31252872	46	4.2	45	68	18	108	28	28	20	21	1.98
31254373--31254435	32	2.0	32	100	0	126	33	6	22	38	1.79
31262683--31263397	48	14.9	48	79	0	721	29	18	25	26	1.98
31262683--31263395	96	7.4	96	94	0	1129	29	18	24	26	1.98
31263846--31263871	9	2.9	9	100	0	52	19	0	11	69	1.18
31263909--31264025	50	2.3	53	88	8	172	35	13	13	37	1.85
31266484--31266542	6	9.3	6	75	17	57	76	1	18	3	1.02
31266493--31266563	27	2.6	28	86	8	101	73	2	19	4	1.13
31266536--31266581	21	2.2	21	84	0	56	65	4	23	6	1.35
31266887--31266913	13	2.1	13	100	0	54	18	7	29	44	1.77
31268212--31268343	50	2.6	51	84	3	176	35	15	12	37	1.84
31268968--31268996	12	2.4	12	100	0	58	37	6	24	31	1.82
31270480--31270518	21	1.9	20	84	5	51	17	38	23	20	1.93
31272582--31272875	50	5.8	50	82	5	297	30	26	17	24	1.97
31272643--31272824	101	1.8	101	87	4	278	31	26	17	24	1.97
31279637--31279924	50	5.7	50	76	6	242	32	26	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31279697--31279878	101	1.8	101	87	0	274	30	26	17	25	1.97
31279646--31279927	151	1.9	149	82	3	359	32	26	15	25	1.95
31282802--31282896	26	3.7	25	77	13	79	24	21	12	42	1.87
31288179--31288342	41	4.0	41	100	0	328	26	14	17	41	1.88
31291982--31292027	24	1.9	24	86	0	65	47	0	2	50	1.13
31296820--31296883	33	1.9	34	90	3	103	25	26	23	25	2.00
31296849--31296912	27	2.3	29	76	17	73	26	26	23	23	2.00
31297072--31297149	27	2.9	27	86	0	102	34	20	23	21	1.97
31297286--31297448	27	6.1	27	79	4	143	25	20	19	34	1.96
31297301--31297448	54	2.8	53	84	6	158	25	20	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172