genome.fa.s10.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  129  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42917540--42917586	22	2.2	22	88	3	69	51	8	0	40	1.33
42920337--42920362	11	2.4	11	100	0	52	92	7	0	0	0.39
42921757--42921845	43	2.1	43	91	0	142	34	22	17	24	1.96
42922697--42922853	43	3.6	43	79	12	153	33	26	17	22	1.96
42922697--42922858	86	1.9	85	84	3	218	33	25	17	22	1.96
42923944--42923968	13	1.9	13	100	0	50	40	24	4	32	1.73
42935869--42935898	6	5.2	6	96	4	53	16	0	13	70	1.18
42939671--42939715	23	1.9	23	86	13	65	13	0	40	46	1.43
42940603--42940663	31	2.0	31	100	0	122	45	9	11	32	1.73
42942066--42942139	35	2.1	35	97	0	139	32	8	10	48	1.67
42942095--42942446	176	2.0	176	100	0	704	39	14	12	33	1.84
42942718--42942761	16	2.9	16	90	9	67	50	0	11	38	1.39
42943727--42943819	38	2.5	38	79	6	109	32	10	20	36	1.87
42944663--42944717	25	2.3	25	84	6	69	56	5	1	36	1.33
42944698--42944725	14	2.0	14	100	0	56	50	7	7	35	1.57
42951561--42951742	46	4.0	46	87	1	240	41	14	23	20	1.89
42951561--42951737	92	1.9	92	88	2	266	42	14	23	19	1.88
42953270--42953308	20	1.9	21	89	5	62	46	15	0	38	1.46
42957508--42957615	26	4.2	26	93	0	189	32	7	24	36	1.83
42963746--42963786	21	2.0	21	85	9	57	51	7	0	41	1.30
42968460--42968583	32	3.9	32	95	0	221	25	14	16	44	1.85
42987052--42987091	19	2.1	19	86	9	55	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42987844--42987879	17	2.1	17	94	0	63	30	0	0	69	0.89
42987851--42987885	17	2.1	17	88	0	52	40	0	0	60	0.97
42989227--42989287	13	4.5	14	76	21	67	24	0	0	75	0.80
42989230--42989284	5	10.4	5	98	2	83	23	0	0	76	0.79
42990022--42990171	47	3.2	46	88	3	219	40	23	19	17	1.92
42991320--42991432	5	22.6	5	100	0	226	60	0	0	39	0.97
42996671--42996820	27	5.5	27	78	4	133	28	28	16	26	1.97
43004648--43004682	18	1.9	18	94	0	61	31	0	5	62	1.18
43004708--43004740	17	1.9	17	88	11	50	54	9	0	36	1.32
43004737--43004807	11	6.5	11	70	20	51	61	2	2	32	1.24
43005556--43005603	23	2.1	23	84	0	60	58	0	4	37	1.18
43008478--43008523	21	2.2	21	100	0	92	45	15	19	19	1.85
43012682--43012732	23	2.2	23	86	6	68	47	13	27	11	1.78
43015112--43015263	58	2.7	57	82	5	175	41	0	3	54	1.19
43015354--43015442	44	2.0	44	84	4	115	37	24	5	32	1.79
43015424--43015493	32	2.2	32	87	5	106	31	27	2	38	1.71
43015424--43015494	16	4.4	16	83	3	90	30	26	4	38	1.76
43024730--43024756	13	2.1	13	100	0	54	29	22	22	25	1.99
43025120--43025168	25	2.0	25	84	4	64	63	8	0	28	1.23
43025132--43025196	25	2.9	23	80	15	66	66	7	0	26	1.19
43025158--43025196	19	2.0	20	90	5	62	71	7	0	20	1.10
43037046--43037202	43	3.7	42	79	9	165	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037046--43037210	42	3.8	43	75	10	149	30	25	18	25	1.98
43040935--43041197	132	2.0	132	87	3	386	31	18	20	29	1.96
43045007--43045050	21	2.1	21	87	4	63	20	2	0	77	0.88
43046190--43046218	12	2.5	12	94	5	51	82	0	10	6	0.83
43049610--43049664	23	2.4	24	84	9	78	63	12	14	9	1.51
43057061--43057145	39	2.2	40	85	6	111	29	17	22	30	1.97
43067232--43067298	34	2.0	34	93	0	116	50	19	7	22	1.72
43069330--43069840	3	169.3	3	68	10	177	27	8	2	60	1.40
43069380--43069545	34	4.6	37	70	21	97	24	7	3	65	1.32
43069426--43069488	31	2.1	31	84	3	83	25	7	1	65	1.29
43069440--43069545	34	3.2	31	79	20	110	25	6	0	66	1.21
43069617--43069678	23	2.7	21	81	16	70	27	6	1	64	1.27
43069560--43069679	58	2.1	58	83	9	147	29	8	1	60	1.35
43070048--43070238	3	63.7	3	73	10	104	30	8	0	60	1.31
43075296--43075541	64	3.8	64	98	0	474	30	21	13	34	1.92
43075629--43075771	44	3.3	44	66	11	132	27	24	28	18	1.98
43075673--43075807	42	3.2	42	65	12	121	28	24	25	21	1.99
43075609--43076394	87	9.0	86	93	1	1051	31	21	25	21	1.98
43076408--43077083	68	9.9	68	88	1	942	25	24	22	27	2.00
43076415--43077083	202	3.3	202	92	1	1059	25	24	22	27	2.00
43077062--43077305	44	5.4	44	72	13	120	31	19	20	27	1.97
43077196--43077376	85	2.1	84	81	7	213	33	20	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43077979--43078137	5	31.8	5	88	7	234	18	1	1	77	0.96
43078446--43078947	3	168.3	3	69	10	169	29	7	2	60	1.37
43078568--43078663	34	2.7	35	80	15	108	25	6	1	67	1.20
43078678--43078799	59	2.1	59	82	7	144	29	8	1	60	1.35
43080535--43080593	30	2.0	29	86	3	82	32	1	1	64	1.13
43080539--43080592	9	5.5	10	75	18	51	29	1	1	66	1.12
43082018--43082074	28	2.0	28	100	0	114	31	17	17	33	1.93
43082299--43082336	18	2.1	18	90	0	58	34	18	18	28	1.95
43083030--43083102	38	1.9	39	86	5	105	52	16	6	24	1.68
43087769--43088378	302	2.0	302	91	1	992	30	19	22	27	1.98
43090446--43090503	30	1.9	30	89	0	89	41	3	24	31	1.71
43090715--43090746	13	2.5	13	94	0	55	31	0	12	56	1.37
43090849--43090926	26	3.0	26	61	17	63	28	25	26	19	1.99
43097178--43097225	15	3.3	15	73	5	53	29	0	27	43	1.55
43097174--43097231	29	2.0	29	93	0	98	27	0	29	43	1.55
43098612--43099431	131	6.3	131	84	3	988	39	12	17	29	1.87
43098617--43099419	393	2.0	392	89	0	1212	39	12	17	29	1.87
43099834--43099884	20	2.5	20	84	12	61	35	0	7	56	1.28
43104948--43105041	47	2.0	46	91	2	152	18	19	21	41	1.90
43111059--43111133	29	2.6	28	82	12	89	30	5	5	58	1.43
43116449--43116497	24	2.0	24	92	7	82	28	4	0	67	1.09
43120150--43120467	157	2.0	157	97	0	600	41	16	5	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43120766--43120825	30	2.0	29	87	3	84	13	40	16	28	1.86
43124909--43126869	984	2.0	984	95	0	3494	25	22	16	35	1.95
43130094--43130259	38	4.3	39	79	3	156	19	20	26	33	1.96
43132010--43132121	57	1.9	59	87	3	165	24	19	28	27	1.99
43133348--43133392	23	2.0	23	95	0	81	42	13	2	42	1.56
43134876--43134913	19	2.0	19	89	0	58	34	18	13	34	1.89
43136376--43136505	63	2.1	63	94	0	224	43	11	26	18	1.84
43136439--43136532	42	2.2	42	88	0	134	41	13	26	18	1.88
43136457--43136545	42	2.1	42	85	4	117	41	17	28	12	1.86
43144741--43144927	62	3.0	62	97	1	349	37	12	6	43	1.69
43153253--43153307	29	2.0	27	85	7	74	67	0	1	30	1.01
43153271--43153315	23	2.0	23	90	0	72	66	0	2	31	1.04
43156401--43156531	46	2.8	47	87	3	176	19	21	24	34	1.97
43159139--43159165	6	4.5	6	100	0	54	0	29	33	37	1.58
43171639--43171685	15	3.1	15	70	11	51	36	0	8	55	1.31
43183084--43183109	7	3.7	7	100	0	52	57	0	0	42	0.98
43186706--43186746	20	2.0	20	100	0	82	39	29	14	17	1.89
43187465--43187642	97	1.8	97	85	2	250	26	21	9	42	1.83
43189669--43189788	45	2.8	44	83	7	140	25	29	20	25	1.99
43189796--43190055	38	7.1	38	82	10	308	30	24	22	22	1.99
43189906--43189958	27	2.0	27	96	0	97	32	30	18	18	1.96
43189906--43189965	27	2.2	27	90	0	93	31	28	21	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43189868--43189996	65	2.0	65	92	0	213	31	26	20	20	1.98
43189830--43190034	103	2.0	103	93	0	347	31	25	21	21	1.98
43199104--43199159	21	2.5	23	80	13	73	51	0	8	39	1.33
43199171--43199215	23	2.0	23	100	0	90	51	17	0	31	1.46
43199536--43199609	18	4.1	18	73	3	67	31	6	16	45	1.73
43199629--43199681	18	2.9	18	82	0	70	37	7	13	41	1.72
43199616--43199702	36	2.4	36	79	9	97	39	8	12	40	1.73
43200308--43200428	35	3.5	35	88	2	181	30	24	12	32	1.92
43208737--43208770	17	2.0	17	88	0	50	17	8	5	67	1.37
43212393--43212514	60	2.0	61	98	1	237	36	16	19	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172