genome.fa.s10.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  122  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40685101--40685159	10	6.0	10	75	11	50	35	3	0	61	1.13
40685266--40685312	24	2.0	22	88	8	67	53	2	0	44	1.12
40685303--40685342	21	2.0	21	90	9	66	45	2	0	52	1.14
40687123--40687193	18	3.9	18	79	0	79	40	12	7	39	1.70
40687528--40687569	20	2.1	21	91	8	70	42	11	4	40	1.63
40689208--40689276	6	11.3	6	76	14	70	49	14	18	17	1.80
40689229--40689306	31	2.6	30	85	6	95	48	12	20	17	1.80
40689425--40689484	27	2.3	26	85	2	75	35	20	23	21	1.96
40689452--40689593	67	2.1	67	88	5	203	30	22	28	18	1.97
40689523--40689574	27	2.0	26	84	3	68	34	21	26	17	1.95
40690080--40690349	27	9.9	27	78	5	186	31	10	19	38	1.86
40690166--40690385	81	2.7	81	78	10	218	30	9	22	38	1.85
40690348--40690565	27	8.1	27	81	2	222	36	5	23	33	1.78
40692027--40692149	27	4.6	27	79	8	108	28	8	20	43	1.80
40692028--40692177	81	1.9	81	81	8	189	29	9	18	42	1.81
40692311--40692431	27	4.5	27	87	0	161	36	7	27	28	1.84
40692310--40692458	54	2.8	54	83	2	174	34	8	26	30	1.85
40692328--40692476	27	5.5	26	83	4	111	31	6	26	34	1.83
40692311--40692476	81	2.0	81	83	0	206	33	7	26	33	1.84
40693467--40693534	16	4.1	16	70	21	50	45	5	1	47	1.36
40693616--40693649	4	8.0	4	87	12	50	23	2	0	73	0.97
40693616--40693649	9	4.0	8	88	11	50	23	2	0	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40693615--40693649	13	2.7	13	90	0	61	22	5	0	71	1.07
40695081--40695132	24	2.1	26	82	7	63	48	1	5	44	1.38
40696489--40696584	15	5.8	16	76	20	81	42	3	4	50	1.37
40696490--40696586	7	12.9	7	69	25	56	42	3	4	50	1.37
40696544--40696586	18	2.5	17	84	3	50	39	4	2	53	1.34
40698774--40698815	15	2.6	17	81	7	52	45	9	0	45	1.36
40710484--40710517	18	1.9	17	88	5	50	23	0	44	32	1.54
40714022--40714076	22	2.5	22	87	0	83	34	21	1	41	1.64
40714553--40714590	19	2.0	19	85	10	51	47	5	0	47	1.24
40721657--40721707	17	2.8	19	74	17	54	45	3	1	49	1.32
40722332--40722387	16	3.4	16	82	2	67	46	1	19	32	1.61
40722536--40722612	26	2.9	26	70	20	70	46	2	0	50	1.15
40722566--40722594	15	1.9	15	100	0	58	55	0	0	44	0.99
40727955--40728212	46	5.6	45	75	8	209	26	20	29	23	1.98
40727958--40728128	94	1.8	92	86	2	243	28	18	29	22	1.98
40728143--40728255	44	2.5	43	81	9	129	23	20	30	25	1.98
40734930--40734970	20	2.0	20	85	9	55	48	0	2	48	1.14
40735568--40735789	111	2.0	111	90	0	345	36	32	8	22	1.84
40738613--40738815	43	4.7	42	81	4	203	32	20	19	27	1.97
40738613--40738815	85	2.4	85	82	4	230	32	20	19	27	1.97
40739109--40739156	21	2.3	21	92	0	78	0	58	18	22	1.39
40744060--40744225	9	17.6	9	74	11	136	31	3	19	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40744406--40744895	241	2.0	241	96	1	903	33	13	17	35	1.89
40745104--40745435	183	1.8	183	95	0	601	42	14	16	26	1.86
40748375--40748417	22	2.0	22	95	0	77	48	25	11	13	1.77
40748910--40749053	77	1.9	77	94	0	252	36	21	9	33	1.85
40749890--40750089	80	2.4	83	87	4	282	27	22	15	35	1.94
40751213--40751511	41	7.3	41	85	2	354	19	23	23	34	1.96
40758311--40758368	29	2.0	29	93	0	98	27	3	27	41	1.72
40758320--40758384	29	2.2	29	80	0	76	26	4	27	41	1.75
40763593--40763665	6	12.5	6	73	5	51	73	8	2	15	1.17
40767340--40767387	21	2.3	20	79	10	51	77	4	4	14	1.08
40770570--40770598	10	2.7	11	94	5	51	41	0	20	37	1.53
40771125--40771204	24	3.2	24	72	10	72	16	27	21	35	1.94
40787623--40787932	155	2.0	155	94	0	541	35	15	18	30	1.92
40809720--40809769	26	2.0	24	88	7	73	64	6	0	30	1.18
40809740--40809796	21	2.7	21	76	12	55	70	7	0	22	1.11
40816877--40816941	15	4.4	15	81	9	80	9	13	13	63	1.53
40816872--40816941	30	2.4	29	83	9	97	8	12	17	61	1.55
40838342--40838376	8	4.4	8	100	0	70	37	0	37	25	1.57
40858132--40858179	20	2.4	20	100	0	96	4	27	16	52	1.62
40858665--40858834	85	2.0	85	98	0	331	29	12	25	32	1.93
40867756--40867825	35	2.0	35	94	0	122	32	21	15	30	1.94
40869931--40870103	46	3.7	46	78	13	210	21	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40869928--40870098	93	1.8	93	96	0	315	21	21	28	28	1.99
40886521--40886693	46	3.7	46	72	10	145	31	26	17	23	1.97
40894112--40894279	46	3.6	45	76	12	162	29	29	19	22	1.98
40894113--40894283	93	1.8	93	89	0	270	29	29	19	21	1.98
40912748--40912827	40	2.0	40	100	0	160	25	10	27	37	1.88
40912748--40912837	40	2.2	40	94	0	144	24	11	25	38	1.88
40915477--40915545	34	2.0	34	94	0	120	36	15	28	18	1.92
40921144--40921180	15	2.5	15	95	0	65	35	10	5	48	1.61
40921509--40921551	18	2.4	18	77	14	54	53	0	6	39	1.28
40925167--40925626	232	2.0	232	95	0	830	41	21	7	28	1.80
40926093--40926240	46	3.2	46	76	11	151	32	19	22	25	1.98
40926089--40926250	23	7.1	23	74	14	97	33	19	22	24	1.97
40927133--40927194	31	2.0	31	100	0	124	45	19	0	35	1.51
40928667--40928706	16	2.5	16	95	0	71	52	2	0	45	1.14
40928675--40928712	16	2.4	17	91	8	62	57	0	0	42	0.98
40928667--40928712	16	2.9	16	81	18	60	54	2	0	43	1.12
40928734--40928775	13	2.9	14	80	13	50	54	0	0	45	0.99
40928738--40928774	16	2.3	16	86	13	58	59	0	0	40	0.97
40932915--40932952	18	2.1	18	90	0	58	28	28	2	39	1.70
40933396--40933451	21	2.6	22	72	8	62	17	12	42	26	1.85
40933453--40933492	21	1.9	21	89	0	62	7	22	35	35	1.82
40934733--40934852	40	3.0	40	95	2	206	22	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40937355--40937572	46	4.7	46	95	0	382	29	27	21	21	1.98
40942939--40942966	8	3.5	8	100	0	56	42	21	21	14	1.88
40943080--40943119	21	2.0	20	90	5	62	20	20	40	20	1.92
40943310--40943373	31	2.1	31	90	0	101	39	15	21	23	1.92
40946712--40947244	265	2.0	265	96	0	976	41	12	18	27	1.86
40949557--40949708	27	5.6	27	93	3	232	30	28	13	26	1.94
40949557--40949733	55	3.2	55	90	0	264	31	29	13	25	1.94
40955296--40955473	40	4.4	40	91	0	284	30	29	19	19	1.97
40978622--40978757	43	3.2	43	75	10	127	28	25	17	28	1.98
40981240--40981309	30	2.3	30	100	0	140	64	14	5	15	1.47
40991368--40991393	8	3.2	8	100	0	52	84	0	0	15	0.62
40998224--40998300	34	2.3	34	86	4	102	24	25	24	24	2.00
40998237--40998315	34	2.4	33	83	8	97	27	21	24	26	1.99
41001909--41001939	16	1.9	16	93	0	53	35	16	19	29	1.93
41002687--41002751	27	2.4	27	82	5	78	21	24	18	35	1.96
41002687--41002788	27	3.8	26	70	17	73	23	20	19	36	1.95
41002805--41002909	27	3.9	27	75	14	99	34	9	16	40	1.81
41002877--41003004	27	4.8	26	74	13	98	30	12	18	38	1.88
41002994--41003089	27	3.5	27	87	2	138	40	6	26	27	1.79
41012500--41012571	23	3.0	24	88	10	103	27	22	20	29	1.99
41012621--41012659	20	2.0	20	100	0	78	30	20	12	35	1.90
41015206--41015345	31	4.6	30	81	11	96	27	26	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41015233--41015344	31	3.7	31	90	5	169	26	25	17	30	1.97
41015565--41015634	25	2.8	25	91	0	104	24	24	24	27	2.00
41016447--41016519	26	2.8	25	74	17	76	20	17	21	39	1.92
41016560--41016685	27	4.6	27	76	11	103	31	7	19	41	1.80
41016622--41016746	27	4.7	26	80	6	115	29	7	21	41	1.80
41017615--41017766	56	2.6	57	91	4	243	31	23	15	29	1.95
41041306--41041413	53	2.0	54	96	1	200	23	18	19	38	1.93
41045745--41045873	46	2.8	45	87	4	161	27	17	28	25	1.98
41045942--41046058	49	2.4	49	81	2	128	29	18	28	23	1.98
41047274--41047313	21	2.0	21	85	5	55	15	40	25	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172