genome.fa.s10.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  5  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395362--1395480	25	4.8	24	74	12	89	26	22	20	31	1.98
1403017--1403149	49	2.7	49	81	3	151	26	22	20	30	1.98
1403017--1403144	25	5.2	24	70	11	89	25	22	21	30	1.99
1414092--1414148	21	2.6	22	83	5	71	17	31	35	15	1.92
1415920--1415963	23	1.9	23	81	9	54	36	11	6	45	1.67
1415949--1415988	20	2.0	21	90	5	64	32	15	2	50	1.57
1425221--1425588	184	2.0	184	100	0	736	35	18	9	36	1.83
1427304--1427336	17	1.9	17	93	0	57	21	18	21	39	1.93
1428117--1428150	16	2.1	17	89	10	54	23	14	0	61	1.33
1428546--1428574	14	2.1	14	100	0	58	34	31	0	34	1.58
1432583--1432625	22	2.0	22	90	0	68	39	27	23	9	1.85
1432871--1432923	27	2.0	27	84	0	70	28	13	22	35	1.92
1434583--1434661	28	2.8	28	86	0	104	34	11	25	29	1.91
1436634--1436878	57	4.3	56	86	3	321	19	18	32	29	1.96
1436721--1436935	85	2.5	85	85	0	277	19	18	33	29	1.95
1436693--1436962	142	1.9	143	91	3	445	18	18	33	29	1.95
1436807--1436953	57	2.6	57	86	1	188	17	19	34	29	1.95
1441902--1441980	28	2.8	28	86	0	104	34	11	25	29	1.91
1449731--1449775	16	2.9	16	93	3	74	57	0	0	42	0.98
1449731--1449775	5	8.6	5	90	9	72	57	0	0	42	0.98
1450708--1450737	15	2.0	15	93	0	51	53	16	0	30	1.44
1450711--1450968	86	3.0	86	98	0	491	41	17	3	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1460229--1460416	49	3.8	49	89	2	234	28	26	18	26	1.98
1468494--1468576	25	3.3	24	81	5	85	27	48	6	18	1.71
1469035--1469098	29	2.1	31	83	11	80	35	0	3	60	1.12
1469076--1469100	8	3.1	8	100	0	50	24	0	0	76	0.80
1473801--1473841	21	1.9	22	85	5	57	31	24	4	39	1.76
1474257--1474319	28	2.2	28	91	0	99	30	25	11	33	1.90
1480438--1480507	25	2.8	25	91	6	115	25	24	22	27	2.00
1480437--1480520	25	3.4	24	85	10	109	28	22	22	26	1.99
1480438--1480532	50	1.9	50	82	8	122	27	23	23	26	2.00
1480727--1480810	31	2.7	31	88	1	125	32	15	26	26	1.96
1485333--1485362	14	2.1	14	100	0	60	30	10	33	26	1.89
1487013--1487053	21	1.9	22	85	5	57	31	24	4	39	1.76
1487192--1487306	41	2.9	39	75	8	108	27	29	20	21	1.98
1487476--1487548	28	2.6	28	84	0	101	30	23	12	34	1.91
1488526--1489774	624	2.0	623	97	0	2372	37	19	9	33	1.84
1498317--1498771	228	2.0	228	92	0	766	34	23	16	25	1.95
1500081--1500269	40	4.7	40	81	7	240	25	26	22	24	2.00
1500081--1500265	80	2.3	80	89	3	275	25	27	23	23	2.00
1502796--1502931	60	2.3	61	83	8	172	27	25	18	27	1.98
1502925--1502968	20	2.3	19	84	11	54	27	29	18	25	1.98
1504862--1504890	15	1.9	15	100	0	58	58	0	0	41	0.98
1513644--1513733	40	2.3	40	86	1	119	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513773--1513884	40	2.8	40	93	0	179	27	20	28	23	1.99
1513763--1513911	80	1.9	78	81	2	181	25	18	28	27	1.98
1514107--1514506	200	2.0	200	98	0	773	29	13	21	36	1.91
1520827--1520905	39	2.0	39	95	0	140	31	16	13	37	1.88
1522538--1522770	40	5.8	40	88	4	342	24	22	29	24	1.99
1522538--1522770	82	2.9	80	89	5	351	24	22	29	24	1.99
1522538--1522770	122	1.9	122	89	1	360	24	22	29	24	1.99
1539008--1539069	22	2.8	22	85	0	79	12	3	51	32	1.56
1542005--1542198	47	4.1	47	88	0	271	33	10	28	27	1.90
1542169--1543030	97	8.9	97	99	0	1667	36	7	25	29	1.83
1543177--1543285	37	2.9	37	91	0	173	22	19	30	27	1.98
1544653--1545482	62	13.4	62	99	0	1635	24	24	16	35	1.95
1545700--1545768	25	2.8	25	93	0	120	27	21	24	26	1.99
1550220--1550303	31	2.7	31	78	7	82	25	26	15	33	1.95
1550516--1550567	25	2.1	25	85	3	70	30	19	17	32	1.95
1550510--1550568	24	2.4	23	78	10	64	28	22	18	30	1.97
1551848--1551874	14	1.9	14	100	0	54	70	0	29	0	0.88
1552907--1552937	3	10.3	3	100	0	62	64	0	0	35	0.94
1554182--1554267	40	2.2	40	97	2	165	45	9	9	36	1.69
1555066--1555151	31	2.8	31	84	8	122	22	26	19	31	1.98
1555362--1555413	25	2.1	25	89	3	79	28	19	19	32	1.96
1555342--1555414	25	3.0	23	80	9	74	27	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1560392--1560716	40	8.1	40	90	1	476	26	27	21	24	1.99
1577906--1578083	27	6.6	27	96	1	311	26	14	29	29	1.95
1583280--1583307	7	4.0	7	100	0	56	71	0	0	28	0.86
1584921--1585001	34	2.3	35	89	2	119	46	6	4	41	1.50
1586501--1586557	27	2.1	27	100	0	114	28	17	15	38	1.91
1596360--1596389	15	2.0	15	93	0	51	43	0	0	56	0.99
1599062--1599098	18	2.1	18	100	0	74	27	10	10	51	1.70
1601475--1601523	19	2.5	19	80	9	55	57	4	2	36	1.30
1602391--1602441	26	2.0	26	84	7	68	37	13	7	41	1.74
1603742--1603790	19	2.4	20	80	13	55	38	0	0	61	0.96
1604226--1604289	30	2.1	30	85	11	85	57	7	0	34	1.27
1605159--1605240	24	3.3	24	67	26	62	54	9	8	26	1.61
1609028--1609061	15	2.3	15	89	0	50	50	17	11	20	1.77
1611286--1611470	79	2.3	81	83	7	227	24	22	27	24	2.00
1611287--1611470	40	4.6	40	82	9	207	25	22	27	24	2.00
1611339--1611503	79	2.1	79	83	6	201	26	21	27	24	1.99
1614773--1614856	44	1.9	44	82	0	105	30	15	23	29	1.95
1634132--1634290	47	3.4	47	72	14	175	22	16	30	30	1.96
1634078--1634304	93	2.4	93	98	0	436	22	17	29	30	1.97
1634086--1634243	46	3.4	46	72	14	171	22	17	28	31	1.97
1640216--1640379	38	4.2	38	86	4	229	20	20	26	32	1.97
1640373--1640500	46	2.9	45	84	7	140	25	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1643776--1643880	43	2.5	42	81	4	122	35	29	13	21	1.92
1653895--1654078	79	2.3	82	83	10	231	25	27	22	25	2.00
1653895--1654078	40	4.7	40	84	8	218	25	27	22	25	2.00
1662323--1662507	79	2.3	82	83	7	229	24	27	22	24	2.00
1662304--1662507	40	5.1	40	81	8	229	24	27	22	25	2.00
1668595--1668644	26	1.9	26	84	8	66	40	22	16	22	1.91
1669711--1669786	24	3.3	23	85	7	84	44	11	30	13	1.79
1669731--1669786	24	2.4	24	90	3	87	46	10	30	12	1.76
1673311--1673353	19	2.4	18	84	7	52	48	0	11	39	1.40
1679075--1679342	43	6.2	42	74	12	195	24	16	26	32	1.96
1679075--1679275	43	4.7	42	79	7	219	24	18	26	30	1.98
1679075--1679275	84	2.4	84	89	4	280	24	18	26	30	1.98
1680706--1680738	13	2.4	14	90	5	50	24	0	12	63	1.28
1681887--1682121	48	4.9	48	70	14	146	27	27	20	23	1.99
1681887--1682142	94	2.7	92	76	12	223	27	26	21	24	1.99
1684714--1684749	17	2.1	18	89	5	56	27	30	16	25	1.97
1685929--1686200	81	3.4	80	86	2	346	21	17	20	40	1.92
1685929--1686200	27	10.1	27	86	1	312	21	17	20	40	1.92
1689123--1689201	38	2.1	38	100	0	158	31	27	16	24	1.96
1689735--1689807	34	2.1	34	87	0	101	23	23	20	32	1.98
1692147--1692231	44	1.9	44	87	0	125	28	11	24	35	1.91
1695723--1695907	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1695724--1695907	40	4.6	39	83	9	212	24	22	27	25	2.00
1695776--1695940	79	2.1	79	83	6	201	25	21	27	26	1.99
1696748--1696774	13	2.1	13	100	0	54	55	22	7	14	1.64
1703681--1703945	40	6.7	40	88	4	349	24	21	28	25	1.99
1710665--1711080	47	8.8	47	94	2	688	29	27	9	33	1.88
1714753--1714880	39	3.3	39	91	0	202	21	28	21	28	1.99
1717205--1717369	43	3.9	43	79	10	178	27	15	24	32	1.96
1719704--1719836	45	3.0	44	71	9	112	30	27	18	24	1.98
1720131--1720172	20	2.1	20	100	0	84	52	9	4	33	1.55
1727563--1727694	44	3.0	45	71	15	118	32	26	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172