genome.fa.s10.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  116  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38646608--38646647	20	2.0	20	100	0	80	50	0	0	50	1.00
38646602--38646647	20	2.4	18	83	13	65	47	2	0	50	1.13
38648997--38649052	6	9.3	6	92	0	85	37	0	62	0	0.95
38648997--38649052	18	3.1	18	92	0	94	37	0	62	0	0.95
38652223--38652262	14	2.9	14	92	7	64	35	20	12	32	1.90
38657177--38657202	7	3.7	7	100	0	52	84	0	0	15	0.62
38658894--38658951	29	1.9	30	89	6	91	22	12	13	51	1.74
38667729--38667776	24	2.0	26	88	12	75	27	4	6	62	1.38
38677241--38677378	52	2.6	53	83	3	163	26	16	26	30	1.97
38681478--38681542	18	3.8	17	77	18	73	53	0	1	44	1.09
38681840--38681876	3	12.3	3	94	0	65	35	0	0	64	0.94
38687240--38687484	71	3.6	70	79	4	232	27	17	14	40	1.89
38692867--38692908	20	2.1	20	100	0	84	50	23	4	21	1.68
38699634--38699661	14	2.0	14	100	0	56	50	0	14	35	1.43
38702874--38703191	157	2.0	157	99	0	629	31	5	21	42	1.74
38705479--38705510	16	2.0	16	100	0	64	25	6	18	50	1.70
38708244--38708401	42	3.6	42	75	12	138	28	18	26	26	1.98
38708103--38708401	90	3.2	90	75	7	244	29	19	25	25	1.99
38708090--38708363	48	5.8	48	73	12	183	29	18	25	26	1.98
38711142--38711175	10	3.5	10	84	8	52	67	5	0	26	1.13
38712648--38712717	20	3.5	20	71	11	63	28	22	21	27	1.99
38715088--38715158	36	2.0	36	100	0	142	46	8	8	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38716387--38716472	44	2.0	44	86	2	120	41	10	15	32	1.81
38720308--38720359	23	2.3	23	93	0	86	21	25	21	32	1.98
38720329--38720431	24	4.4	24	78	14	99	27	22	16	33	1.95
38720636--38720715	20	4.0	20	83	0	106	36	7	22	33	1.82
38720641--38720731	40	2.3	40	88	0	137	36	7	21	34	1.82
38720697--38720799	40	2.6	39	75	14	102	35	8	19	35	1.83
38720699--38720785	20	4.3	20	72	8	52	36	9	19	34	1.84
38722487--38722527	20	2.0	21	90	4	66	73	0	26	0	0.84
38724382--38724509	46	2.8	46	86	2	168	38	15	23	22	1.92
38724769--38724800	17	1.9	17	93	6	57	46	0	15	37	1.46
38727016--38727150	42	3.2	42	77	8	116	43	17	22	16	1.87
38727980--38728097	57	2.1	57	90	6	186	38	10	21	30	1.86
38735894--38736041	63	2.3	63	79	12	156	25	28	15	31	1.96
38736745--38736805	30	2.0	30	83	0	77	31	22	8	37	1.84
38738990--38739033	22	2.0	22	86	8	63	50	0	4	45	1.22
38744236--38744284	6	8.2	6	93	0	80	46	16	4	32	1.65
38744858--38744890	16	2.1	16	94	0	57	75	0	24	0	0.80
38744971--38745008	13	2.8	13	92	4	58	23	5	5	65	1.34
38747107--38747147	21	2.0	21	95	0	73	29	9	7	53	1.60
38748593--38748733	55	2.5	55	82	8	144	34	15	21	27	1.94
38749622--38749647	3	8.7	3	100	0	52	34	0	0	65	0.93
38749756--38749818	31	2.0	30	85	11	83	39	0	7	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38750915--38750958	18	2.6	18	80	20	58	50	0	18	31	1.47
38752291--38752524	90	2.6	89	79	7	269	29	6	13	51	1.65
38752563--38752596	16	2.1	17	88	5	52	29	5	5	58	1.45
38755649--38755683	16	2.2	16	94	0	61	37	8	11	42	1.72
38767721--38767785	29	2.2	29	83	5	76	38	3	13	44	1.60
38768079--38768120	21	2.0	21	86	13	61	33	0	2	64	1.07
38769744--38769806	28	2.3	28	81	5	76	33	3	0	63	1.10
38772411--38772473	28	2.3	28	81	5	76	33	3	0	63	1.10
38776118--38776157	20	2.0	20	85	0	53	45	2	10	42	1.51
38778812--38778839	11	2.5	11	100	0	56	17	0	21	60	1.36
38779004--38779033	15	1.9	16	93	6	53	23	0	23	53	1.46
38782530--38782581	18	2.8	18	83	11	61	80	3	1	13	0.93
38784218--38784329	21	5.1	22	84	12	126	65	0	1	33	1.03
38784260--38784329	3	23.3	3	100	0	140	67	0	0	32	0.91
38786319--38786435	43	2.7	43	84	6	166	29	23	14	31	1.94
38789347--38789624	139	2.0	139	100	0	556	35	15	18	30	1.92
38790757--38790788	7	4.6	7	96	0	55	15	50	0	34	1.45
38796664--38796734	29	2.6	29	91	6	112	22	1	25	50	1.57
38796905--38797203	125	2.4	127	81	4	338	25	18	27	28	1.98
38796905--38797204	63	4.8	63	79	5	304	25	18	27	28	1.98
38799071--38799116	23	2.0	23	84	12	60	36	0	8	54	1.32
38803602--38803632	16	1.9	16	93	0	53	9	9	9	70	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38805092--38805137	24	1.9	24	86	8	67	10	15	43	30	1.81
38807239--38807288	19	2.6	19	96	0	91	48	16	4	32	1.64
38809087--38809139	26	2.0	26	100	0	106	18	22	7	50	1.72
38814220--38814300	42	1.9	42	85	5	110	25	32	19	22	1.98
38817727--38817759	16	2.1	16	94	0	57	51	0	0	48	1.00
38817949--38817980	5	6.4	5	100	0	64	62	0	0	37	0.95
38818447--38818535	44	2.0	44	85	8	119	20	21	24	33	1.97
38821825--38821866	22	1.9	22	85	0	57	40	26	4	28	1.76
38822775--38823181	206	2.0	206	92	0	672	16	16	36	30	1.91
38826331--38826404	17	4.8	15	78	14	71	24	2	1	71	1.07
38829567--38829606	8	4.9	8	84	6	53	80	5	15	0	0.88
38829576--38829621	17	2.7	17	86	10	67	76	4	17	2	1.06
38831461--38831503	17	2.5	18	81	7	54	53	13	2	30	1.53
38832217--38832245	13	2.1	14	93	6	51	13	13	10	62	1.55
38833620--38833676	26	2.1	28	80	6	64	49	10	5	35	1.60
38844820--38845233	135	3.0	138	87	4	640	20	24	14	40	1.90
38849315--38849518	73	2.7	73	78	13	239	51	11	5	30	1.61
38849356--38849548	82	2.4	82	89	3	291	52	11	5	30	1.60
38852232--38852285	21	2.6	20	82	8	72	44	0	1	53	1.11
38852219--38852278	21	3.0	20	80	7	70	46	0	5	48	1.24
38852308--38852346	20	2.0	20	85	9	55	33	0	0	66	0.92
38855444--38855525	43	1.9	43	80	14	98	28	29	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38855549--38855608	30	2.0	30	100	0	120	30	26	13	30	1.94
38861632--38861746	30	3.9	30	81	5	128	29	23	3	43	1.70
38861632--38861747	29	3.9	30	80	5	130	29	23	3	43	1.70
38861629--38861760	29	4.5	29	72	12	90	32	21	3	43	1.68
38861629--38861754	59	2.1	59	79	5	148	32	21	3	42	1.69
38862282--38862322	14	3.1	14	79	6	50	75	0	21	2	0.92
38862917--38862964	17	2.8	17	76	23	55	31	16	10	41	1.82
38863019--38863067	16	3.0	16	80	16	64	32	14	12	40	1.83
38863096--38863132	15	2.5	14	91	8	56	89	0	0	10	0.49
38863104--38863136	9	3.7	9	100	0	66	87	0	0	12	0.53
38863200--38863627	18	25.0	18	71	15	221	29	13	11	45	1.79
38863200--38863627	34	12.5	35	68	15	177	29	13	11	45	1.79
38863200--38863616	51	8.1	51	68	13	225	29	14	11	45	1.80
38863437--38863627	17	10.9	17	72	18	117	30	12	11	45	1.77
38875447--38875962	76	6.8	76	98	0	978	28	17	20	32	1.96
38875903--38876136	122	1.9	123	82	2	292	31	14	20	34	1.92
38875909--38876260	191	1.8	192	97	0	670	29	14	21	34	1.93
38876279--38876313	17	2.0	18	88	5	54	17	11	5	65	1.43
38876218--38876477	92	2.9	87	79	10	280	27	17	17	37	1.93
38877820--38877929	55	2.0	55	96	0	202	36	17	9	37	1.81
38883911--38883938	14	2.0	14	100	0	56	28	14	7	50	1.69
38887463--38887515	24	2.2	24	83	6	63	41	7	5	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38889619--38889643	7	3.6	7	100	0	50	16	0	0	84	0.63
38889620--38889671	14	3.5	14	77	12	50	25	0	1	73	0.94
38890696--38890744	23	2.2	23	85	3	64	71	4	2	22	1.13
38900590--38900629	21	1.9	21	94	0	71	52	0	0	47	1.00
38904759--38904826	20	3.4	20	76	10	59	19	5	4	70	1.25
38906265--38906295	4	7.8	4	100	0	62	77	0	0	22	0.77
38909407--38909446	21	1.9	21	89	0	62	12	22	12	52	1.72
38913528--38913607	39	2.1	39	92	0	133	33	15	20	31	1.93
38913574--38913759	94	2.0	94	89	0	282	34	12	20	31	1.90
38913653--38913990	130	2.6	130	84	0	435	36	13	18	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172