genome.fa.s10.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  164  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53628120--53628158	11	3.7	11	86	6	55	0	17	0	82	0.68
53628275--53628328	23	2.3	24	93	6	101	0	25	9	64	1.23
53628283--53628339	13	4.7	13	74	20	52	0	21	7	71	1.08
53628293--53628340	11	4.2	11	76	10	51	0	18	8	72	1.08
53628437--53628480	9	4.8	9	77	5	52	0	20	0	79	0.73
53628434--53628477	13	3.2	13	87	12	70	0	18	0	81	0.68
53628434--53628490	15	4.1	14	82	17	66	0	22	0	77	0.77
53628428--53628494	33	2.0	33	82	5	82	1	23	0	74	0.90
53628849--53628965	30	3.9	29	77	11	94	44	3	22	29	1.69
53628864--53628965	30	3.4	30	84	2	134	44	3	22	29	1.71
53644561--53644596	14	2.6	14	91	4	56	0	19	5	75	1.00
53644567--53644607	14	3.0	13	89	7	55	0	14	9	75	1.04
53645131--53645232	30	3.4	30	84	2	125	46	3	21	28	1.69
53650712--53650761	20	2.4	21	83	10	66	16	2	14	68	1.31
53652962--53653004	21	2.0	21	86	8	61	44	25	0	30	1.55
53655578--53655636	31	1.9	31	89	0	91	72	0	5	22	1.03
53661360--53661770	209	2.0	210	88	1	619	34	19	13	32	1.90
53679883--53679943	18	3.4	18	86	0	86	32	16	13	37	1.87
53683763--53683797	17	2.0	18	88	5	54	71	0	28	0	0.86
53685873--53685930	28	2.1	27	93	3	98	36	22	18	22	1.95
53685901--53686064	46	3.6	46	87	3	222	39	15	21	22	1.92
53692441--53692486	23	2.0	23	83	8	58	30	2	10	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53692718--53692754	19	1.9	19	88	0	56	40	2	5	51	1.39
53698102--53698201	43	2.3	43	89	0	155	26	30	21	23	1.99
53698465--53698511	19	2.5	19	76	10	51	72	4	2	21	1.12
53698748--53698996	23	10.9	23	80	7	256	40	22	4	31	1.74
53698810--53698866	22	2.5	23	80	2	71	49	22	0	28	1.50
53702614--53702738	41	3.0	40	83	4	124	25	18	15	40	1.89
53702871--53702895	8	3.1	8	100	0	50	12	0	12	76	1.04
53702884--53702931	7	6.7	7	92	4	78	25	0	2	72	0.95
53702885--53702930	15	3.3	14	84	6	58	26	0	2	71	0.97
53702891--53702957	7	8.2	8	79	12	59	28	1	2	67	1.14
53703572--53703616	14	3.2	14	87	6	65	51	24	0	24	1.49
53703710--53703757	14	3.4	14	77	13	53	41	33	0	25	1.55
53703814--53703845	11	2.9	11	95	0	55	37	40	0	21	1.54
53704050--53704107	31	1.9	31	82	10	75	29	6	3	60	1.39
53704291--53704571	116	2.4	115	88	2	411	31	20	20	27	1.97
53704387--53704724	155	2.2	154	91	1	543	31	20	20	26	1.98
53704509--53704610	40	2.6	40	90	1	152	31	21	20	26	1.98
53704271--53704839	269	2.1	269	90	1	899	31	20	20	27	1.98
53704543--53704953	115	3.6	115	93	1	707	31	21	20	26	1.98
53710085--53710128	21	2.1	21	91	0	70	29	20	29	20	1.98
53712191--53712258	18	3.7	18	76	5	57	58	4	2	33	1.33
53713156--53713213	16	3.6	16	67	4	53	17	6	50	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53713163--53713230	33	2.1	33	100	0	136	11	8	55	23	1.63
53716952--53717089	68	2.0	68	97	0	258	39	15	15	29	1.88
53717339--53717403	32	2.0	32	96	0	121	44	15	9	30	1.78
53719215--53719275	30	2.0	31	87	3	88	44	6	22	26	1.77
53719539--53719573	17	2.0	18	88	5	54	37	2	5	54	1.39
53727366--53727409	17	2.5	17	88	7	61	75	4	13	6	1.17
53727543--53727593	17	2.7	19	85	11	61	60	0	39	0	0.97
53727557--53727590	15	2.4	14	86	13	52	64	0	35	0	0.94
53727684--53727749	26	2.7	26	88	6	93	34	7	9	48	1.63
53731572--53731610	17	2.3	17	91	8	62	33	10	10	46	1.72
53732145--53732288	71	2.0	72	82	4	175	34	17	24	23	1.96
53733908--53733966	16	3.8	16	66	8	50	22	6	5	66	1.36
53734069--53734130	13	4.5	13	77	16	54	29	3	1	66	1.17
53734094--53734130	13	2.9	13	96	4	67	29	0	0	70	0.88
53734357--53734415	16	3.8	16	66	8	50	23	5	5	66	1.32
53734330--53735917	151	10.7	150	88	4	2239	29	7	7	56	1.54
53734695--53734730	13	2.8	13	87	4	56	22	0	2	75	0.94
53734806--53734866	16	3.9	16	68	8	54	21	6	4	67	1.33
53734968--53735027	13	4.5	13	73	15	52	26	3	3	66	1.23
53734466--53735917	297	4.9	299	92	3	2279	29	7	6	56	1.53
53735949--53736001	15	3.5	15	76	5	61	20	1	3	73	1.08
53736489--53736531	17	2.6	15	80	20	50	2	32	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53736474--53736539	23	2.9	22	81	4	78	1	31	0	66	1.01
53736452--53736538	9	10.3	9	69	18	53	1	37	0	60	1.04
53736685--53736733	19	2.6	18	80	9	53	6	8	10	75	1.18
53736679--53736733	18	2.9	18	75	21	51	7	7	9	76	1.16
53747090--53747292	94	2.2	94	85	1	273	32	16	13	37	1.88
53749488--53749515	10	2.8	10	100	0	56	35	21	10	32	1.88
53749735--53749856	31	3.9	31	84	0	154	28	24	17	29	1.97
53755516--53755560	21	2.0	23	83	12	58	60	4	2	33	1.29
53757263--53757392	18	7.4	17	68	8	55	20	23	23	33	1.97
53757263--53757297	17	2.1	16	89	5	52	20	22	22	34	1.97
53757306--53757398	36	2.6	36	80	0	105	20	23	22	33	1.97
53762349--53762389	17	2.4	17	88	8	57	75	0	17	7	1.02
53762418--53762456	16	2.4	16	86	0	51	69	0	28	2	1.02
53764050--53764231	46	4.0	46	90	1	249	39	14	24	21	1.91
53767057--53767091	18	1.9	18	88	11	54	42	0	2	54	1.15
53768274--53768333	24	2.5	24	83	8	77	38	1	1	58	1.18
53771778--53771862	39	2.2	40	86	2	118	29	31	21	17	1.96
53775888--53775925	3	12.7	3	94	0	67	31	2	0	65	1.06
53778140--53778194	16	3.4	16	80	5	58	29	21	7	41	1.80
53795565--53795604	18	2.3	17	91	4	62	32	0	0	67	0.91
53801292--53801365	33	2.2	33	87	0	103	36	10	9	43	1.72
53804589--53804643	28	2.0	28	100	0	110	34	14	14	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53806206--53806290	30	2.9	29	89	5	125	17	49	5	27	1.69
53806795--53806874	3	26.3	3	72	20	53	30	3	1	65	1.18
53806786--53806874	9	9.4	9	72	16	56	28	3	1	67	1.14
53806784--53806835	15	3.6	14	76	7	50	23	1	0	75	0.91
53806799--53806878	18	4.4	18	74	16	67	31	3	1	63	1.20
53806794--53806874	12	6.8	12	75	12	78	29	3	1	65	1.17
53810510--53810539	12	2.5	12	94	0	51	46	0	6	46	1.29
53810774--53810989	3	70.0	3	68	21	71	61	2	6	29	1.35
53811498--53811579	30	2.7	30	96	0	146	25	7	51	15	1.69
53811496--53811578	18	5.3	18	62	31	55	26	7	50	15	1.70
53833432--53834401	139	7.0	139	98	0	1856	38	4	13	42	1.65
53834785--53834825	10	4.0	11	75	18	52	21	9	7	60	1.52
53845526--53845583	3	19.3	3	100	0	116	67	0	0	32	0.91
53845706--53845730	10	2.5	10	100	0	50	64	0	0	36	0.94
53846088--53846149	31	2.0	32	81	9	74	58	6	1	33	1.34
53849531--53849620	27	3.2	27	87	4	126	24	47	6	21	1.74
53849528--53849622	30	3.3	29	86	5	131	24	49	6	20	1.71
53850960--53851466	250	2.0	250	96	0	942	21	20	20	37	1.95
53861381--53861556	73	2.4	72	92	3	300	57	10	23	8	1.58
53861488--53861521	12	2.7	13	81	9	52	79	0	20	0	0.73
53862391--53862642	90	2.8	90	91	1	400	25	18	21	35	1.95
53870130--53870229	50	2.0	50	100	0	200	44	12	12	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53877381--53877423	17	2.5	18	81	11	54	39	11	20	27	1.88
53878490--53878642	33	4.7	33	82	4	157	32	15	23	29	1.95
53882983--53883007	7	3.6	7	100	0	50	28	28	12	32	1.92
53883974--53884016	22	2.0	22	100	0	86	46	9	2	41	1.48
53889917--53889955	20	2.0	19	85	5	51	33	0	5	61	1.18
53897902--53897942	18	2.3	18	80	20	50	46	4	7	41	1.53
53902086--53902126	2	20.5	2	100	0	82	51	0	48	0	1.00
53904815--53904976	83	2.0	82	85	3	218	31	8	9	50	1.64
53905832--53906131	151	2.0	151	94	0	528	40	9	9	40	1.71
53922540--53922596	26	2.2	26	96	0	105	36	17	7	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172