genome.fa.s10.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  102  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34293597--34293711	43	2.7	43	88	0	113	20	26	34	19	1.96
34297040--34297073	16	2.3	14	90	10	50	70	2	0	26	1.01
34297909--34297968	24	2.5	24	76	12	61	40	1	3	55	1.27
34298868--34298937	35	2.0	35	97	0	131	32	8	22	35	1.85
34300597--34300786	96	2.0	96	92	0	317	12	33	16	37	1.85
34306004--34306066	30	2.1	30	93	0	108	49	9	17	23	1.76
34308213--34308252	19	2.1	19	100	0	80	42	5	25	27	1.75
34311985--34312154	46	3.7	46	77	14	188	23	17	26	32	1.97
34311979--34312149	93	1.8	93	92	2	290	22	18	26	31	1.97
34318787--34318915	47	2.8	47	78	8	147	29	24	20	24	1.99
34318785--34318932	46	3.2	46	73	13	144	29	27	19	24	1.99
34321341--34321560	47	4.7	46	73	10	164	28	17	29	24	1.97
34321340--34321613	94	2.9	93	77	12	283	30	16	28	24	1.97
34322903--34322977	31	2.4	31	90	0	114	28	25	18	28	1.98
34323004--34323092	42	2.1	42	95	0	160	40	20	11	28	1.86
34323237--34323384	26	5.8	26	90	1	221	27	23	22	26	1.99
34324194--34324250	27	2.1	27	100	0	114	17	29	22	29	1.97
34324289--34324621	27	12.3	27	78	5	233	30	8	21	39	1.83
34324376--34324608	81	2.9	81	85	1	263	28	8	21	42	1.81
34324291--34324675	54	7.1	54	77	7	244	32	8	20	38	1.83
34324402--34324648	134	1.8	134	80	3	291	30	8	21	38	1.84
34324573--34324705	54	2.5	53	86	2	176	41	6	19	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34324599--34324723	27	4.6	27	88	2	146	43	7	19	30	1.78
34327210--34327291	43	1.9	43	87	0	119	21	20	29	28	1.98
34331630--34331729	39	2.6	39	88	3	148	24	23	26	27	2.00
34338492--34338573	43	1.9	43	89	0	128	20	20	31	26	1.98
34347155--34347192	12	3.2	12	92	0	58	36	18	0	44	1.50
34357652--34357735	34	2.5	33	80	3	114	27	21	25	26	1.99
34361313--34361625	46	6.7	46	72	15	218	24	29	18	27	1.98
34361310--34361625	47	6.7	46	72	15	208	24	29	18	27	1.98
34361779--34361834	28	2.0	28	100	0	112	32	14	14	39	1.86
34365630--34365678	15	3.3	15	82	0	53	57	10	18	14	1.65
34366888--34366959	36	2.0	36	97	0	135	27	27	12	31	1.93
34369484--34369615	43	3.0	42	83	5	165	33	28	15	22	1.95
34373657--34373888	49	4.7	49	84	3	293	29	27	17	25	1.97
34373657--34373887	100	2.3	99	85	2	302	29	27	17	25	1.98
34396956--34397030	28	2.7	27	77	4	96	24	22	14	38	1.92
34399678--34399739	31	2.0	31	100	0	124	45	16	9	29	1.79
34399942--34400159	45	4.9	45	91	1	332	25	28	22	22	1.99
34399897--34400159	135	2.0	130	84	5	339	25	28	21	23	1.99
34412641--34412672	16	1.9	17	93	6	57	0	18	0	81	0.70
34416774--34417011	49	4.8	49	86	2	314	26	18	26	28	1.98
34416767--34417011	99	2.5	100	85	2	332	26	18	27	27	1.98
34419982--34420050	30	2.3	31	80	14	83	10	13	15	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34420878--34421048	86	2.0	86	97	0	324	38	9	16	36	1.81
34422267--34422510	49	4.9	49	83	2	283	24	18	28	29	1.98
34422266--34422510	99	2.5	101	85	2	336	24	17	28	28	1.98
34423975--34424037	27	2.3	27	80	0	72	34	15	20	28	1.94
34425363--34425452	43	2.1	42	85	6	119	25	18	24	31	1.98
34429341--34429502	43	3.8	44	78	9	147	24	14	25	35	1.94
34435268--34435547	48	5.8	48	77	5	262	23	27	20	27	1.99
34435259--34435548	96	3.0	95	81	5	291	24	27	20	27	1.99
34435268--34435547	144	1.9	144	82	5	352	23	27	20	27	1.99
34436220--34436343	37	3.4	37	100	0	248	48	12	12	25	1.77
34437457--34437676	43	5.2	43	68	14	170	24	27	19	28	1.98
34437455--34437680	84	2.7	84	92	0	380	24	27	19	28	1.98
34437455--34437644	41	4.5	41	69	13	129	25	27	18	27	1.98
34439574--34439603	15	2.1	15	93	6	53	36	26	6	30	1.82
34442527--34442594	34	2.0	34	97	0	127	36	14	25	23	1.93
34444027--34444169	40	3.6	40	90	5	218	25	28	23	22	1.99
34447000--34447126	41	3.0	41	68	13	123	26	27	18	26	1.98
34446952--34447177	84	2.7	84	94	0	389	26	27	18	27	1.98
34449195--34449337	48	3.0	47	75	6	144	28	30	16	24	1.96
34456515--34456683	46	3.7	44	78	7	169	25	30	18	24	1.98
34456516--34456729	94	2.3	90	82	6	243	25	29	18	26	1.98
34460291--34460468	27	6.6	27	82	3	178	28	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34460312--34460467	82	1.9	81	85	3	215	28	29	15	26	1.96
34467611--34467657	22	2.1	22	84	7	60	46	6	10	36	1.64
34468926--34468966	21	1.9	21	85	5	55	65	0	0	34	0.93
34474437--34474719	71	4.0	69	79	5	210	25	20	22	32	1.98
34474515--34474951	71	6.2	71	76	8	320	23	18	22	34	1.96
34474621--34474810	72	2.7	72	80	10	203	25	19	19	35	1.95
34479499--34479597	15	6.6	15	79	0	108	11	17	14	57	1.65
34479490--34479607	30	4.0	30	87	5	159	10	16	16	56	1.66
34479490--34479593	45	2.3	45	83	6	138	10	17	16	55	1.68
34481979--34482153	46	3.8	45	77	10	176	21	21	28	29	1.98
34481975--34482145	93	1.8	92	89	1	270	21	21	29	28	1.98
34482955--34483157	102	2.0	102	96	0	370	31	14	18	35	1.91
34493768--34493795	14	2.0	14	100	0	56	42	21	0	35	1.53
34495953--34495999	15	3.1	15	87	0	76	34	21	10	34	1.88
34498266--34498303	20	1.9	20	88	0	58	10	34	31	23	1.89
34516255--34516409	80	1.9	80	100	0	310	38	18	8	34	1.81
34519590--34519652	32	2.0	32	100	0	126	25	17	12	44	1.84
34522526--34522697	40	4.3	39	80	6	168	24	23	26	26	2.00
34530029--34530140	41	2.8	40	82	9	147	25	25	25	25	2.00
34530030--34530170	39	3.5	39	83	6	158	24	25	26	23	2.00
34536628--34536652	7	3.6	7	100	0	50	64	0	0	36	0.94
34558447--34558631	79	2.3	80	81	9	209	23	28	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34558428--34558631	40	5.1	40	78	12	206	23	28	23	25	1.99
34563373--34563463	41	2.2	41	92	0	155	28	26	20	24	1.99
34563619--34563658	18	2.2	18	90	0	62	25	20	15	40	1.90
34565108--34565169	27	2.3	28	88	5	92	40	16	12	30	1.86
34565528--34565587	22	2.7	22	78	0	66	25	25	18	31	1.97
34567159--34567183	13	1.9	13	100	0	50	32	0	4	64	1.12
34567878--34567978	45	2.2	45	87	3	139	23	21	10	43	1.84
34567878--34567985	47	2.4	45	85	3	126	22	21	12	43	1.86
34571226--34571316	47	2.0	47	95	2	157	40	27	9	21	1.85
34571499--34571683	40	4.6	40	82	8	223	25	27	22	24	2.00
34579393--34579577	40	4.6	40	81	3	228	24	26	23	25	2.00
34579357--34579577	80	2.8	79	83	4	241	24	25	23	26	2.00
34582874--34582927	27	2.0	27	85	0	72	40	7	12	38	1.72
34583173--34583405	49	4.7	50	79	2	254	25	18	26	29	1.98
34583173--34583451	150	1.9	150	84	4	384	26	18	26	29	1.98
34587009--34587047	19	2.1	19	95	0	69	53	12	5	28	1.60
34595882--34596145	40	6.7	40	89	5	360	25	21	27	25	1.99
34595882--34596178	119	2.5	118	81	9	338	26	21	27	25	1.99
34603814--34604036	39	5.7	40	86	7	273	25	22	27	24	2.00
34603814--34604036	79	2.8	81	85	8	282	25	22	27	24	2.00
34603814--34604069	79	3.3	79	82	9	224	26	21	27	24	1.99
34609656--34609811	27	5.9	27	83	2	190	28	21	8	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34609629--34609837	53	3.9	53	83	4	224	31	21	8	38	1.84
34609629--34609837	80	2.6	80	77	3	215	31	21	8	38	1.84
34609789--34610121	27	12.3	27	77	8	160	40	21	8	29	1.82
34609803--34610010	54	3.9	53	80	5	186	41	21	8	28	1.82
34609626--34609875	107	2.3	107	74	5	254	34	22	8	35	1.83
34609803--34610008	80	2.6	80	81	6	202	41	21	8	28	1.82
34610143--34610211	27	2.6	27	83	4	86	34	21	23	20	1.96
34610164--34610238	27	2.8	27	87	4	107	32	17	25	25	1.97
34611043--34611217	26	6.8	26	89	0	255	27	21	22	29	1.99
34611043--34611217	52	3.4	52	92	1	282	27	21	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172