genome.fa.s10.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  140  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46202252--46202359	44	2.4	44	87	3	144	29	23	13	33	1.93
46209013--46209067	11	5.1	11	77	4	58	65	21	7	5	1.38
46212772--46212880	24	4.4	25	70	16	75	38	20	21	20	1.94
46212784--46212891	24	4.3	24	75	10	92	35	19	24	21	1.96
46213017--46213078	24	2.6	24	81	0	61	29	20	25	24	1.99
46217286--46217894	131	4.6	131	79	4	475	28	19	17	34	1.95
46217247--46217896	263	2.5	261	74	7	602	29	19	17	34	1.95
46219836--46219880	23	2.0	23	81	0	54	37	6	8	46	1.61
46232455--46232914	45	10.4	44	64	10	132	28	18	25	27	1.98
46232980--46233175	45	4.4	45	66	11	134	27	17	27	27	1.98
46232181--46233207	132	7.8	132	93	0	1653	28	18	24	28	1.98
46233589--46233637	25	1.9	26	87	4	73	75	20	2	2	1.00
46236078--46236562	131	3.7	131	80	5	421	28	19	16	35	1.94
46236215--46236694	263	1.8	263	81	7	598	27	19	17	35	1.94
46240659--46240782	39	3.2	39	94	4	223	37	22	25	13	1.91
46253754--46253947	100	2.0	97	92	3	325	52	12	13	21	1.74
46260769--46260909	51	2.9	47	76	18	135	33	5	4	56	1.42
46260781--46260836	26	2.3	25	79	17	64	32	5	1	60	1.29
46260770--46260844	25	2.9	27	75	15	79	33	5	1	60	1.28
46260770--46260871	51	2.0	49	85	12	136	32	5	1	59	1.32
46260780--46260971	24	7.7	23	70	19	81	31	7	4	56	1.46
46260887--46261039	24	6.3	24	72	13	91	30	8	2	58	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46260991--46261038	25	2.0	24	91	0	69	35	6	0	58	1.23
46261247--46261313	18	3.8	17	71	15	55	26	1	2	68	1.12
46261347--46261406	24	2.5	24	83	8	77	26	3	8	61	1.40
46264610--46264767	57	2.9	56	80	13	152	42	1	3	52	1.27
46264930--46264984	16	3.4	16	84	0	74	30	27	5	36	1.79
46272439--46272465	13	2.1	13	100	0	54	22	29	11	37	1.89
46272390--46272515	63	2.0	63	95	0	225	32	19	19	29	1.96
46272452--46272557	50	2.1	50	91	1	167	33	17	23	25	1.97
46272533--46272681	31	4.8	31	86	3	210	27	21	26	24	1.99
46272781--46272886	49	2.2	48	86	3	140	28	16	26	29	1.96
46272842--46272956	42	2.7	42	85	4	142	31	13	26	28	1.94
46277361--46277613	28	9.0	28	79	3	231	37	13	21	27	1.90
46277361--46277632	56	4.9	56	79	1	260	36	13	22	27	1.91
46277361--46277613	84	3.0	83	83	5	305	37	13	21	27	1.90
46277592--46277684	27	3.4	27	82	2	107	20	18	27	33	1.96
46280322--46280439	21	5.6	21	66	4	67	16	24	17	40	1.90
46280322--46280444	42	2.9	42	84	2	149	16	24	17	41	1.89
46284620--46284646	4	6.8	4	100	0	54	51	0	22	25	1.48
46285476--46285519	14	3.1	14	83	6	52	54	4	0	40	1.21
46286416--46287190	201	3.9	199	79	6	729	29	20	18	31	1.96
46287021--46287362	162	2.1	161	83	6	415	29	20	17	32	1.95
46288119--46288331	99	2.2	100	90	1	340	23	29	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46288293--46288413	33	3.7	33	76	12	115	23	28	22	24	1.99
46288286--46288413	66	1.9	66	84	3	168	25	28	21	25	1.99
46295785--46295928	71	2.0	71	98	0	279	31	20	8	38	1.83
46296984--46297023	17	2.4	17	87	8	55	35	2	2	60	1.24
46298980--46299060	27	3.0	27	85	0	117	17	29	27	25	1.97
46301793--46301839	5	9.4	5	90	9	78	78	0	21	0	0.75
46302890--46302928	17	2.3	17	86	0	51	58	2	2	35	1.25
46302918--46302949	14	2.3	14	94	0	55	40	0	9	50	1.35
46308530--46308608	28	2.8	28	86	0	104	34	11	25	29	1.91
46311116--46311149	16	2.1	16	94	0	59	38	17	20	23	1.93
46315792--46315865	29	2.7	27	71	17	62	31	6	2	59	1.37
46319021--46319082	21	2.9	20	74	9	52	35	6	0	58	1.24
46322038--46322101	31	2.0	32	93	3	112	31	1	12	54	1.47
46341325--46341783	230	2.0	230	100	0	918	35	16	19	28	1.94
46343082--46343123	22	1.9	22	85	0	57	42	23	21	11	1.86
46345163--46345222	3	19.7	3	76	10	59	30	3	5	61	1.33
46345274--46345353	27	2.9	26	78	9	70	28	6	2	62	1.32
46345932--46345964	17	2.1	17	88	11	52	48	6	3	42	1.43
46350173--46350205	15	2.3	15	89	5	50	84	0	15	0	0.61
46351065--46351213	73	2.0	73	90	0	235	24	16	23	36	1.94
46351297--46351729	88	4.9	89	87	3	561	25	16	18	39	1.91
46351384--46351776	177	2.2	176	87	4	560	24	16	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46351838--46351940	44	2.3	44	94	0	188	26	22	24	27	2.00
46353517--46353571	3	18.0	3	78	10	58	29	1	5	63	1.27
46354280--46354312	17	2.1	17	88	11	52	48	6	3	42	1.43
46355098--46355124	14	1.9	14	100	0	54	66	3	7	22	1.33
46356746--46356796	23	2.3	23	86	10	70	37	0	3	58	1.16
46356836--46356903	23	3.2	21	78	12	68	30	1	1	66	1.10
46356836--46357030	21	9.2	19	66	27	60	31	5	0	62	1.22
46357055--46357081	12	2.2	12	100	0	54	40	7	0	51	1.30
46358385--46358417	12	2.8	12	90	9	50	66	3	0	30	1.06
46358389--46358429	14	3.0	14	80	16	50	68	2	0	29	1.03
46359654--46359724	20	3.6	21	74	16	71	59	1	5	33	1.30
46359651--46359826	12	13.9	12	69	21	58	61	2	3	31	1.29
46359715--46359769	15	3.9	15	79	15	73	61	1	3	32	1.24
46359722--46359781	26	2.6	22	73	17	59	61	1	5	31	1.27
46361158--46361227	3	24.0	3	73	16	58	65	2	2	28	1.21
46361173--46361234	20	3.3	19	78	10	56	66	4	3	25	1.27
46361240--46361286	20	2.4	20	82	13	62	78	0	8	12	0.95
46363071--46363148	41	1.9	41	84	5	104	24	19	20	35	1.95
46363261--46363999	68	10.9	68	91	0	1154	26	22	25	26	2.00
46364014--46364187	88	2.0	87	85	5	235	22	23	20	33	1.97
46371209--46371235	14	1.9	14	100	0	54	66	3	7	22	1.33
46371699--46372051	167	2.1	167	100	0	706	56	5	12	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46372016--46372061	22	2.0	23	87	8	67	69	2	6	21	1.22
46378804--46378911	26	4.2	26	87	0	162	36	24	6	33	1.81
46379455--46379538	26	3.2	26	89	0	132	35	23	4	35	1.76
46379620--46379671	25	2.1	25	85	0	68	36	9	15	38	1.80
46381638--46381922	138	2.1	138	89	0	435	45	6	8	39	1.60
46381987--46382028	20	2.1	20	100	0	84	42	9	0	47	1.36
46388497--46388543	22	2.2	21	84	3	58	36	21	8	34	1.84
46388514--46388573	17	3.2	19	83	13	79	36	16	8	38	1.79
46388977--46389352	87	4.3	86	68	17	245	27	21	17	32	1.96
46388899--46389384	261	1.9	261	89	1	769	27	21	17	33	1.96
46390501--46390552	8	6.6	8	84	4	61	7	5	0	86	0.70
46390508--46390555	14	3.3	15	81	16	57	6	6	0	87	0.67
46390501--46390552	16	3.3	16	83	5	70	7	5	0	86	0.70
46390501--46390555	23	2.5	22	88	8	85	7	5	0	87	0.68
46397273--46397351	19	4.2	19	85	9	108	35	16	10	37	1.82
46397275--46397361	36	2.4	34	78	12	102	35	16	10	37	1.82
46400437--46400486	20	2.5	20	80	9	57	54	12	8	26	1.64
46400552--46400624	36	2.0	36	100	0	146	41	10	5	42	1.63
46406752--46406778	5	5.4	5	100	0	54	40	0	0	59	0.98
46410073--46410098	3	8.7	3	100	0	52	69	0	30	0	0.89
46411091--46411180	47	1.9	47	95	0	162	35	23	18	22	1.96
46413711--46413740	16	1.9	15	93	6	51	3	20	23	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46414918--46415025	26	4.2	26	93	0	189	36	24	7	32	1.83
46417068--46417251	92	2.0	92	97	0	350	26	32	11	29	1.91
46417104--46417246	47	3.2	44	63	18	103	27	30	12	29	1.93
46420250--46420347	26	3.8	26	91	0	160	37	22	7	32	1.81
46421092--46421128	14	2.6	15	83	12	51	37	5	0	56	1.22
46421094--46421156	21	3.1	21	77	8	60	39	4	0	55	1.21
46422954--46422999	20	2.3	20	85	7	58	54	0	2	43	1.12
46422965--46423014	15	3.3	15	77	2	55	50	0	0	50	1.00
46422972--46423014	18	2.4	18	84	0	59	48	0	0	51	1.00
46422965--46423004	10	4.0	10	90	0	62	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172