genome.fa.s10.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  141  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46428954--46429022	35	2.0	35	100	0	138	47	8	5	37	1.58
46431185--46431240	19	2.9	19	79	10	60	33	3	10	51	1.54
46431184--46431251	20	3.5	20	80	6	59	35	2	8	52	1.47
46442262--46442303	20	2.1	20	86	8	59	52	0	0	47	1.00
46447764--46447807	17	2.6	16	82	10	52	65	4	9	20	1.38
46449116--46449165	17	2.7	20	78	18	70	10	0	44	46	1.37
46453755--46453804	17	2.7	20	78	18	70	10	0	44	46	1.37
46457343--46457398	3	18.3	3	88	3	85	67	1	1	28	1.10
46457463--46457489	3	9.0	3	100	0	54	66	0	0	33	0.92
46457742--46458082	3	111.7	3	67	14	128	59	3	8	28	1.44
46464909--46464958	24	2.1	24	88	0	73	50	4	0	46	1.20
46465947--46466046	22	4.4	22	68	15	69	61	6	3	30	1.35
46466019--46466071	26	2.1	25	86	10	72	64	3	1	30	1.22
46467610--46467729	46	2.6	46	75	8	120	31	15	20	32	1.93
46468494--46468629	46	3.0	46	85	0	182	28	22	16	32	1.95
46469054--46469154	53	1.9	53	89	0	157	53	7	16	21	1.68
46470054--46470100	8	5.8	8	92	2	67	4	2	6	87	0.74
46470054--46470100	24	2.0	24	91	0	76	4	2	6	87	0.74
46474042--46474149	29	3.8	29	77	1	101	27	26	15	29	1.96
46475929--46476012	28	3.0	27	74	10	71	28	28	15	27	1.96
46482918--46482988	22	3.3	22	67	15	67	66	5	1	26	1.22
46482960--46483012	26	2.1	25	86	10	72	66	3	0	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46483133--46483164	12	2.7	12	90	0	55	65	0	3	31	1.08
46484825--46484850	13	2.0	13	100	0	52	23	15	23	38	1.92
46485475--46485568	47	2.0	47	97	0	179	38	28	5	27	1.79
46485476--46485553	24	3.3	24	67	22	74	39	30	3	25	1.74
46489434--46489922	244	2.0	244	97	0	924	39	16	11	32	1.85
46493070--46493135	30	2.2	31	94	2	116	54	15	6	24	1.63
46493424--46493535	54	2.1	54	94	0	197	28	26	12	32	1.93
46500120--46500198	35	2.2	37	86	13	121	36	15	10	37	1.81
46500141--46500196	17	3.5	15	88	9	60	35	16	10	37	1.83
46500127--46500198	19	3.9	19	89	10	123	36	15	11	37	1.83
46500778--46500859	42	1.9	42	82	2	101	26	26	14	31	1.95
46500483--46500964	260	1.9	261	89	1	752	28	22	16	32	1.96
46500784--46501407	207	3.0	209	92	2	987	28	22	17	31	1.97
46500822--46501517	205	3.5	204	89	5	989	29	21	17	31	1.96
46501577--46501854	44	6.3	44	73	8	235	27	24	18	29	1.98
46501577--46501854	132	2.1	132	93	0	475	27	24	18	29	1.98
46502355--46502392	6	6.7	6	91	8	62	0	10	0	89	0.49
46502355--46502392	11	3.4	11	96	3	67	0	10	0	89	0.49
46504907--46504940	12	2.8	12	86	0	50	0	29	0	70	0.87
46508011--46508086	22	3.7	21	76	15	68	40	17	6	35	1.75
46508040--46508118	35	2.2	37	86	13	121	35	16	10	37	1.82
46508061--46508116	17	3.5	15	88	9	60	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46508047--46508118	19	3.9	19	89	10	123	36	15	11	37	1.83
46510661--46510713	27	2.0	27	85	7	72	35	3	1	58	1.27
46510802--46510911	56	2.0	56	92	0	184	40	13	17	28	1.87
46515494--46515545	21	2.5	21	81	6	61	26	7	26	38	1.83
46519936--46519983	17	3.1	14	78	18	51	47	18	0	33	1.49
46521636--46521660	13	1.9	13	100	0	50	24	0	4	72	1.02
46525200--46525349	80	1.9	79	85	8	207	43	8	10	38	1.69
46527376--46527454	32	2.5	31	91	4	140	31	10	17	40	1.83
46529667--46529695	14	2.0	15	93	6	51	58	0	0	41	0.98
46530968--46531012	22	2.1	22	84	8	58	55	0	0	44	0.99
46530988--46531034	17	2.5	18	83	16	60	53	0	0	46	1.00
46531737--46532012	91	3.0	90	85	3	331	32	11	14	41	1.81
46532403--46532540	69	2.0	69	98	0	267	36	18	11	33	1.87
46539141--46539245	30	3.5	30	100	0	210	14	26	34	24	1.94
46539141--46539258	60	2.0	60	93	3	202	15	27	33	24	1.95
46539781--46539809	12	2.3	13	94	5	51	41	0	13	44	1.44
46540869--46540976	54	2.0	54	98	0	207	15	12	30	40	1.85
46543946--46544029	26	3.2	26	96	0	150	36	25	4	33	1.77
46545697--46545775	19	4.2	19	90	9	126	37	10	16	35	1.82
46545687--46545774	36	2.4	36	80	17	119	38	10	15	35	1.82
46550197--46550394	99	2.0	99	95	0	360	16	23	30	28	1.96
46551548--46551607	24	2.5	24	82	12	70	83	0	10	6	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46551548--46551612	13	4.7	13	78	10	58	84	0	9	6	0.77
46552764--46552826	30	2.2	29	84	13	87	47	4	6	41	1.50
46553122--46553161	21	1.9	21	85	10	55	47	10	7	35	1.65
46554326--46554549	89	2.5	89	81	9	235	37	20	15	26	1.92
46554502--46554723	55	4.1	55	93	2	360	36	18	18	27	1.93
46554753--46554864	54	2.1	54	91	0	179	36	16	18	27	1.93
46554611--46554929	141	2.3	141	97	0	611	34	18	19	27	1.95
46554932--46554965	14	2.4	14	90	9	52	58	5	17	17	1.57
46554807--46555039	91	2.6	87	84	11	310	36	19	18	25	1.95
46554944--46555115	73	2.3	74	89	4	256	36	22	18	23	1.95
46555025--46555368	86	4.1	83	82	5	395	38	20	15	25	1.92
46555032--46555366	88	4.0	83	83	5	397	37	20	15	25	1.93
46561325--46561403	9	8.8	9	97	0	122	22	10	27	39	1.86
46568021--46568083	30	2.2	29	84	13	87	47	4	6	41	1.50
46568389--46568428	21	1.9	21	85	10	55	47	10	7	35	1.65
46568487--46568593	3	35.7	3	74	15	80	62	4	1	30	1.26
46570055--46570617	44	12.8	43	73	9	388	31	17	23	27	1.97
46570051--46570617	132	4.3	132	92	1	940	31	17	23	27	1.97
46570579--46571105	206	2.6	206	91	0	824	30	17	22	29	1.97
46571505--46571602	19	5.2	19	86	7	137	37	8	16	37	1.78
46571505--46571602	36	2.6	37	85	9	126	37	8	16	37	1.78
46575094--46575122	12	2.5	12	94	5	51	10	24	37	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46578957--46578997	17	2.4	18	80	12	50	0	31	0	68	0.90
46578966--46579039	11	6.8	10	73	15	58	4	20	4	71	1.19
46580901--46581180	131	2.2	130	78	8	284	35	9	12	43	1.75
46582203--46582295	44	2.1	44	97	0	177	35	23	6	34	1.81
46585999--46586043	20	2.3	19	82	14	56	37	4	6	51	1.49
46586523--46586561	20	2.0	20	85	10	53	33	2	7	56	1.41
46586606--46586654	20	2.3	22	86	6	66	34	0	4	61	1.15
46586606--46586654	22	2.1	22	85	7	62	34	0	4	61	1.15
46590639--46590704	6	9.4	7	79	12	50	56	3	3	37	1.30
46590682--46590831	3	50.7	3	69	17	73	58	2	4	34	1.31
46604921--46604951	13	2.3	14	94	5	55	51	6	0	41	1.27
46605006--46605092	3	29.7	3	68	21	51	63	3	5	27	1.34
46605679--46605708	8	3.6	8	91	8	51	20	0	3	76	0.92
46606983--46607008	6	4.3	6	100	0	52	15	0	0	84	0.62
46610589--46610680	46	2.0	46	100	0	184	32	17	10	39	1.84
46615780--46615812	15	2.2	15	94	0	57	12	15	6	66	1.42
46619965--46620565	300	2.0	300	100	0	1202	33	13	19	33	1.90
46647275--46647371	49	2.0	49	87	4	142	29	27	18	23	1.98
46647277--46647383	49	2.2	49	84	3	135	31	28	15	23	1.96
46652879--46652930	25	2.0	26	81	3	61	38	7	5	48	1.56
46655441--46655548	45	2.3	46	88	4	155	48	4	6	40	1.50
46659562--46659597	17	2.1	17	94	0	63	30	0	11	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46660872--46660937	15	4.5	15	85	11	100	53	9	0	37	1.33
46661406--46661466	13	4.7	13	75	0	59	39	27	8	24	1.84
46661419--46661479	26	2.3	26	80	0	86	39	21	8	31	1.82
46661572--46661624	22	2.4	23	77	20	60	3	26	0	69	1.05
46668767--46668808	21	2.0	21	90	0	66	35	0	4	59	1.19
46668819--46668854	18	1.9	19	88	5	56	36	2	11	50	1.53
46668845--46668885	20	2.0	20	90	0	64	39	0	4	56	1.21
46670347--46670448	41	2.5	40	88	6	150	28	25	19	26	1.99
46676513--46676614	41	2.5	40	82	9	125	28	24	18	28	1.98
46684053--46684154	41	2.5	41	88	3	143	29	26	19	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172