genome.fa.s10.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  148  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48664439--48664478	18	2.2	18	86	8	55	67	12	0	20	1.22
48664619--48664669	22	2.3	23	80	16	63	64	9	7	17	1.46
48674438--48674483	17	2.7	18	77	12	53	34	0	10	54	1.36
48682126--48682177	26	2.1	26	85	7	72	46	5	0	48	1.26
48682225--48682292	25	2.8	24	86	4	91	33	2	0	63	1.10
48682202--48682356	35	4.4	34	69	14	91	31	4	1	61	1.27
48682225--48682295	24	2.9	24	87	4	97	33	2	0	63	1.09
48682215--48682349	7	19.7	7	67	20	56	32	3	2	61	1.26
48682289--48682357	28	2.5	28	83	4	86	31	4	4	59	1.37
48685341--48685395	21	2.8	20	81	10	60	56	7	1	34	1.38
48685415--48685496	23	3.5	23	76	11	76	60	4	3	30	1.34
48685405--48685496	26	3.7	26	75	8	91	61	4	3	30	1.31
48685521--48685598	23	3.5	23	69	25	69	61	5	1	32	1.26
48685573--48685635	18	3.4	18	75	12	65	61	4	1	31	1.26
48685762--48685789	12	2.3	12	100	0	56	67	0	0	32	0.91
48685827--48685879	17	2.7	19	81	18	65	60	3	0	35	1.15
48685934--48685989	24	2.3	25	82	11	64	58	10	3	26	1.48
48686624--48687137	257	2.0	257	100	0	1028	31	7	20	40	1.80
48693039--48693078	21	2.0	20	85	5	53	37	0	15	47	1.45
48697396--48697506	55	2.0	55	94	0	195	48	9	27	14	1.75
48697785--48697902	59	2.0	59	91	0	191	38	10	33	18	1.85
48700402--48700429	9	3.1	9	100	0	56	25	0	21	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48702720--48702835	58	2.0	58	93	0	196	28	15	26	29	1.96
48706709--48706999	87	3.4	85	71	11	231	31	19	21	27	1.97
48711954--48712013	23	2.8	20	76	16	50	35	0	5	60	1.19
48712017--48712116	51	2.0	51	82	7	123	38	6	16	40	1.73
48713098--48713153	15	4.0	15	73	17	57	55	0	0	44	0.99
48713108--48713170	26	2.5	25	82	10	83	58	1	0	39	1.07
48716163--48716197	6	5.7	6	86	6	52	37	0	62	0	0.95
48716165--48716206	18	2.3	18	87	0	57	40	0	59	0	0.97
48720540--48720571	7	4.6	7	96	0	55	71	3	12	12	1.25
48721450--48721497	15	3.1	16	83	16	57	70	2	0	27	0.98
48721441--48721511	11	6.5	11	76	12	58	66	2	1	29	1.15
48727591--48727710	60	2.0	60	93	0	204	22	25	17	34	1.96
48731828--48731875	15	3.1	16	83	16	57	70	2	0	27	0.98
48731819--48731889	11	6.5	11	76	12	58	66	2	1	29	1.15
48737620--48737703	37	2.2	39	85	4	109	32	21	10	35	1.88
48738139--48738178	18	2.2	18	90	0	62	30	7	27	35	1.84
48743839--48743864	13	2.0	13	100	0	52	69	0	0	30	0.89
48747796--48747834	20	1.9	20	84	5	51	41	15	17	25	1.89
48751042--48751148	3	35.7	3	71	9	67	30	3	3	61	1.31
48751126--48751437	134	2.4	134	82	8	394	31	3	6	58	1.41
48751398--48751464	21	3.0	23	77	14	70	32	1	7	58	1.35
48751410--48751465	23	2.5	22	79	2	67	33	1	8	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48751846--48751879	14	2.4	14	85	0	50	41	5	5	47	1.52
48762617--48762678	31	2.0	31	90	0	97	37	25	17	19	1.94
48763657--48763823	77	2.2	78	92	1	282	26	16	20	36	1.94
48763764--48763886	63	1.9	64	86	1	176	21	21	25	31	1.98
48765578--48765641	25	2.5	25	78	14	60	34	3	6	56	1.40
48765594--48765647	22	2.5	22	80	14	58	31	3	5	59	1.38
48765708--48765911	3	70.0	3	71	17	112	31	3	1	62	1.23
48765567--48766022	149	3.0	152	90	5	737	30	3	3	61	1.31
48768013--48768083	36	2.0	36	100	0	142	33	25	18	22	1.96
48774065--48774116	26	2.0	26	82	14	63	25	1	5	67	1.23
48774103--48774171	31	2.2	31	89	0	102	42	2	8	46	1.49
48775755--48775854	49	2.0	49	83	11	125	21	25	17	37	1.94
48775958--48776012	28	1.9	29	82	10	69	30	27	12	29	1.93
48777061--48777335	137	2.0	137	100	0	550	37	13	18	30	1.89
48785635--48785685	25	2.0	25	100	0	102	50	15	3	29	1.62
48788212--48788262	21	2.4	22	76	3	59	29	1	0	68	1.00
48791682--48791708	7	3.9	7	100	0	54	14	0	11	74	1.08
48791784--48791809	7	3.7	7	100	0	52	23	0	0	76	0.78
48791771--48791831	23	2.7	23	70	5	54	34	0	0	65	0.93
48791841--48791932	8	10.0	9	69	23	50	38	1	3	57	1.22
48795786--48795847	26	2.3	26	75	8	63	59	4	0	35	1.19
48798352--48798457	4	26.0	4	68	12	56	23	9	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48798653--48798694	12	3.6	12	93	3	59	26	7	0	66	1.17
48802521--48803069	189	2.9	186	79	6	457	31	16	21	30	1.95
48802947--48803240	44	6.6	44	76	3	214	30	15	21	32	1.94
48803038--48803247	89	2.4	89	80	1	233	30	14	22	33	1.93
48802947--48803257	133	2.3	131	81	5	376	32	15	20	31	1.94
48804643--48804767	4	30.8	4	67	8	56	23	10	2	64	1.37
48805512--48805970	38	12.4	38	74	14	170	35	15	23	25	1.94
48805586--48806077	219	2.2	218	82	5	562	37	14	21	25	1.92
48805539--48806051	73	7.0	72	80	7	464	36	15	22	26	1.93
48805539--48806074	146	3.6	145	81	3	554	36	15	22	25	1.93
48816084--48816178	37	2.6	37	86	6	131	49	33	0	16	1.46
48818180--48818302	47	2.6	47	83	2	140	31	9	32	26	1.89
48818425--48818503	37	2.1	37	90	0	122	24	18	31	25	1.98
48820295--48820355	30	2.0	30	100	0	122	37	29	13	19	1.90
48820325--48820901	141	4.2	134	88	4	734	32	25	16	24	1.96
48820362--48820940	273	2.1	274	86	4	804	32	25	16	25	1.96
48820494--48820961	141	3.3	141	88	2	656	32	25	16	26	1.96
48824973--48825028	18	3.5	15	81	18	60	37	10	16	35	1.83
48824971--48825042	19	3.9	19	89	10	123	37	11	15	36	1.83
48824971--48825042	35	2.0	37	91	8	121	37	11	15	36	1.83
48825034--48825077	21	2.0	22	86	4	63	36	4	13	45	1.64
48827174--48827286	41	2.7	41	84	2	145	32	15	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48827174--48827361	43	4.5	42	77	10	154	30	16	23	28	1.96
48827255--48827367	39	2.7	41	81	10	122	24	18	27	29	1.98
48827439--48827520	31	2.6	32	80	3	85	59	23	3	13	1.50
48828203--48828231	14	2.1	14	93	6	51	58	6	0	34	1.25
48829223--48829380	24	6.4	24	89	6	226	27	22	19	30	1.98
48829229--48829380	75	2.0	76	93	1	261	28	21	19	30	1.97
48829223--48829380	51	3.2	49	88	5	237	27	22	19	30	1.98
48829430--48829496	20	3.3	20	89	0	107	32	22	11	32	1.90
48829533--48829580	25	1.9	25	86	0	69	25	16	25	33	1.96
48836512--48836733	9	24.0	9	69	15	123	36	2	14	46	1.58
48836474--48836737	47	5.5	47	75	15	227	37	2	14	46	1.57
48836469--48836686	74	2.9	74	95	1	384	36	3	14	46	1.60
48836548--48836826	121	2.3	121	93	1	479	37	2	14	46	1.57
48836669--48836811	74	1.9	74	92	0	241	38	1	13	46	1.53
48837011--48837042	14	2.4	14	94	5	57	62	0	0	37	0.95
48836973--48837359	95	4.1	95	88	9	576	53	4	6	35	1.45
48837106--48837137	14	2.4	14	94	5	57	62	0	0	37	0.95
48837121--48837303	86	2.1	86	94	0	321	53	3	6	36	1.45
48836973--48837359	181	2.0	191	88	9	578	53	4	6	35	1.45
48838810--48838860	27	1.9	26	92	4	84	41	13	13	31	1.84
48840616--48840642	14	1.9	14	100	0	54	29	0	11	59	1.32
48841549--48841599	26	2.0	24	88	7	75	41	3	9	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48841548--48841605	16	3.4	17	73	9	55	43	3	8	44	1.51
48841820--48841869	22	2.3	23	79	10	59	34	38	2	26	1.68
48841830--48841882	22	2.4	22	78	12	63	33	35	1	28	1.68
48841816--48841908	7	12.9	7	69	6	51	39	33	1	25	1.63
48841975--48842037	22	2.9	22	74	9	56	46	25	0	28	1.53
48841983--48842016	15	2.4	14	90	5	50	47	26	0	26	1.53
48842024--48842071	25	1.9	25	86	0	69	50	25	0	25	1.50
48842364--48842495	41	3.2	41	84	2	167	29	19	23	27	1.98
48843902--48843990	12	7.6	11	71	24	51	67	0	4	28	1.10
48843905--48843991	15	6.0	15	73	21	53	66	0	5	27	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172