genome.fa.s10.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  111  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37246337--37246456	56	2.1	56	98	0	231	45	9	23	22	1.81
37247904--37248827	47	19.6	47	98	0	1749	34	8	29	28	1.86
37251532--37251596	34	1.9	34	100	0	130	44	18	6	30	1.74
37253424--37253509	41	2.1	40	82	2	100	67	8	2	22	1.29
37256173--37256237	32	2.0	32	100	0	130	38	24	6	30	1.80
37261080--37261110	12	2.6	12	94	0	53	19	48	22	9	1.78
37263625--37263707	42	2.0	42	97	0	157	24	24	12	39	1.89
37265107--37265369	40	6.6	39	86	4	278	25	27	21	25	1.99
37265107--37265369	120	2.2	119	82	4	307	25	27	21	25	1.99
37265301--37265378	40	1.9	41	82	10	97	26	28	20	24	1.99
37267183--37267528	175	2.0	175	92	0	584	24	28	17	29	1.97
37269157--37269231	38	2.0	38	94	0	132	22	24	25	28	2.00
37269764--37269849	45	1.9	45	97	0	163	25	32	11	30	1.91
37271170--37271763	297	2.0	297	96	0	1098	29	24	20	26	1.99
37273594--37273765	40	4.3	40	86	2	204	26	27	20	25	1.99
37273596--37273818	40	5.6	39	80	5	198	26	26	21	26	1.99
37273750--37273827	40	1.9	41	82	10	97	26	28	20	24	1.99
37281539--37281801	40	6.6	40	87	3	298	26	28	20	24	1.99
37281733--37281810	40	1.9	41	82	10	97	26	28	21	23	1.99
37292866--37293009	40	3.6	40	84	4	182	23	25	24	26	2.00
37294198--37294273	38	2.0	38	100	0	152	31	23	13	31	1.93
37296486--37296548	32	2.1	30	82	11	76	25	3	23	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37303512--37303537	10	2.6	10	100	0	52	46	0	7	46	1.31
37303558--37303601	18	2.3	20	76	11	56	50	0	0	50	1.00
37303563--37303595	17	2.0	16	94	5	57	54	0	0	45	0.99
37303592--37303628	19	2.0	19	89	5	58	40	0	2	56	1.13
37305235--37305289	27	2.0	27	100	0	110	43	7	3	45	1.49
37305493--37305540	16	3.1	16	93	3	80	2	27	6	64	1.28
37305510--37305581	26	2.8	26	82	0	81	2	26	4	66	1.23
37305515--37305590	26	2.9	26	76	7	73	2	23	5	68	1.23
37307946--37307994	20	2.5	20	96	3	91	32	6	6	55	1.49
37307946--37307994	10	5.0	10	80	5	64	32	6	6	55	1.49
37334965--37335055	27	3.4	27	85	0	128	36	18	21	23	1.95
37335390--37335452	32	2.0	32	87	0	90	30	15	23	30	1.96
37335394--37335468	32	2.3	32	81	0	87	30	20	22	26	1.98
37349609--37349676	31	2.2	31	81	5	75	41	10	14	33	1.80
37373440--37373468	12	2.4	12	100	0	58	68	0	6	24	1.13
37373433--37373486	15	3.9	15	77	20	55	70	0	5	24	1.08
37373460--37373497	18	2.1	18	95	0	67	68	2	5	23	1.23
37373646--37373699	26	2.2	26	83	9	69	62	1	5	29	1.28
37373823--37373866	17	2.4	18	81	7	54	65	2	4	27	1.23
37375967--37376010	21	2.2	20	84	12	54	56	2	4	36	1.32
37378270--37378313	18	2.5	17	82	10	61	65	4	4	25	1.30
37386101--37386201	43	2.4	44	85	5	136	38	7	10	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37390515--37390665	27	5.6	27	88	1	212	27	13	28	30	1.94
37390515--37390665	82	1.9	81	87	1	221	27	13	28	30	1.94
37390515--37390665	55	2.8	54	88	1	221	27	13	28	30	1.94
37400779--37400824	23	1.9	25	86	8	69	52	8	4	34	1.52
37402298--37402365	27	2.5	28	83	7	77	60	1	1	36	1.15
37404447--37404571	28	4.5	28	78	7	110	34	21	15	28	1.94
37404461--37404569	56	1.9	56	85	3	148	35	22	12	29	1.91
37405020--37405191	90	1.9	90	83	2	220	33	20	15	30	1.94
37405016--37405207	90	2.1	92	77	10	207	33	19	16	30	1.94
37407677--37407723	23	2.0	23	100	0	94	51	4	8	36	1.52
37407854--37407978	62	2.0	62	85	0	169	56	16	4	23	1.59
37408839--37409028	105	1.8	105	87	2	283	35	17	20	25	1.95
37409961--37410064	37	2.8	37	84	5	138	16	47	9	26	1.77
37412705--37412809	6	16.8	6	70	18	72	46	14	19	20	1.83
37412711--37412780	19	3.7	19	70	14	63	47	14	18	20	1.83
37412707--37412779	38	1.9	38	88	0	110	46	15	17	20	1.84
37412745--37412809	25	2.6	25	87	0	94	44	13	20	21	1.86
37412928--37413007	27	3.0	26	87	5	97	37	21	23	17	1.94
37413074--37413136	22	2.9	22	79	13	76	34	25	23	15	1.95
37413227--37413292	32	2.1	32	97	0	123	42	15	13	28	1.85
37413291--37413357	26	2.5	27	82	2	82	26	26	22	23	2.00
37413681--37413842	27	6.0	27	88	0	207	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37413710--37413849	27	5.2	27	92	0	208	26	20	17	36	1.94
37413834--37413910	27	2.9	27	71	7	75	31	7	22	38	1.82
37414876--37414904	14	2.1	14	100	0	58	55	0	13	31	1.39
37416348--37416381	17	2.0	17	100	0	68	52	5	5	35	1.50
37416414--37416810	16	24.8	16	67	19	127	45	15	2	36	1.61
37416414--37416572	80	2.0	78	91	2	255	45	15	2	36	1.60
37416496--37416653	46	3.3	46	86	6	226	45	15	3	35	1.64
37416410--37416784	126	2.9	127	85	8	462	45	14	2	36	1.59
37416558--37416735	82	2.2	81	94	1	311	45	14	2	37	1.60
37416410--37416800	179	2.2	177	87	7	557	46	14	2	36	1.59
37416634--37416799	46	3.4	47	86	9	226	46	15	1	36	1.56
37416401--37416818	9	45.7	9	67	18	123	45	15	2	36	1.60
37423129--37423278	55	2.8	54	80	4	149	26	15	29	28	1.96
37423101--37423278	27	6.6	27	77	6	146	25	15	28	30	1.96
37423102--37423257	82	1.9	81	81	6	190	25	16	28	30	1.96
37425081--37425109	14	2.1	14	93	6	51	34	0	10	55	1.34
37427100--37427493	98	4.0	98	98	0	752	32	8	15	43	1.76
37429174--37429201	13	2.2	13	100	0	56	32	21	7	39	1.80
37434052--37434082	14	2.2	14	100	0	62	45	22	6	25	1.76
37439474--37439525	25	2.1	25	85	3	70	40	5	28	25	1.78
37449227--37449273	23	2.0	23	100	0	94	51	4	8	36	1.52
37449404--37449528	62	2.0	62	85	0	169	56	16	4	23	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37450820--37451009	105	1.8	105	87	2	283	35	17	20	25	1.95
37451800--37451838	15	2.7	15	88	4	53	12	0	35	51	1.40
37451915--37451946	15	2.1	15	94	0	55	65	0	6	28	1.16
37455798--37455830	11	3.0	11	86	13	50	63	0	0	36	0.95
37456287--37456325	12	3.3	12	78	7	53	30	12	15	41	1.85
37456270--37456350	23	3.5	24	83	5	94	35	12	12	39	1.81
37456875--37456936	12	5.0	12	81	11	63	37	4	4	53	1.44
37456891--37456950	13	4.8	12	76	15	50	36	1	3	58	1.25
37456879--37456956	38	2.1	38	95	0	138	35	2	5	56	1.35
37467496--37467598	50	2.1	50	96	0	188	30	15	11	42	1.82
37478688--37478713	3	8.7	3	100	0	52	65	0	0	34	0.93
37481453--37481534	26	3.2	26	92	3	139	36	24	7	31	1.83
37487256--37487365	26	4.2	26	95	0	175	36	23	5	34	1.78
37489584--37489623	20	2.0	20	100	0	80	45	0	15	40	1.46
37489843--37490398	275	2.0	276	94	1	972	30	18	10	39	1.85
37492138--37492293	43	3.7	42	78	10	147	25	14	26	33	1.94
37492138--37492293	85	1.8	85	81	8	192	25	14	26	33	1.94
37496607--37496689	42	2.0	42	97	0	157	50	1	21	26	1.56
37499483--37499508	5	5.2	5	100	0	52	80	0	19	0	0.71
37504592--37504649	25	2.6	23	73	26	61	39	12	10	37	1.77
37506239--37506264	12	2.2	12	100	0	52	15	30	26	26	1.96
37507272--37507329	25	2.6	23	73	26	61	39	12	10	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37508823--37508880	25	2.6	23	73	26	61	39	12	10	37	1.77
37511079--37511135	26	2.2	26	81	15	73	22	12	17	47	1.81
37515284--37515336	25	2.1	25	85	0	70	43	7	15	33	1.74
37528307--37528341	6	5.8	6	89	0	52	54	0	25	20	1.45
37528307--37528341	18	1.9	18	94	0	61	54	0	25	20	1.45
37528490--37528546	26	2.2	26	87	0	78	42	12	14	31	1.82
37531003--37531100	29	3.4	29	77	2	119	25	14	2	58	1.47
37531108--37531151	23	1.9	23	85	0	61	20	9	9	61	1.53
37530993--37531347	28	12.9	27	70	15	138	21	13	7	58	1.59
37533255--37533345	38	2.4	38	83	0	110	37	12	15	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172