genome.fa.s10.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  91  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30474521--30474574	26	2.1	26	96	0	99	25	7	27	38	1.83
30476051--30476147	37	2.6	37	81	0	113	29	13	16	40	1.87
30477670--30477751	36	2.3	36	95	0	146	40	19	6	34	1.76
30477775--30477930	34	4.6	34	82	1	161	40	18	12	28	1.87
30477774--30477930	68	2.3	69	83	4	194	40	18	12	28	1.87
30481394--30481481	46	1.9	46	85	0	122	26	32	9	31	1.87
30481458--30481700	47	5.1	47	87	3	317	25	30	11	32	1.91
30486172--30486196	12	2.1	12	100	0	50	24	24	16	36	1.94
30486298--30486466	42	4.0	42	85	2	214	31	24	13	30	1.93
30486264--30486469	84	2.4	86	80	7	242	31	23	13	31	1.93
30489927--30490042	58	2.0	58	93	3	198	26	10	18	44	1.81
30501244--30501327	43	2.0	43	85	4	116	42	10	15	30	1.81
30503329--30503364	18	1.9	19	88	5	56	66	0	0	33	0.92
30503666--30503697	17	1.9	16	93	6	55	75	0	0	25	0.81
30503666--30503708	20	2.1	21	86	4	61	72	0	4	23	1.04
30503713--30503764	25	2.1	25	100	0	104	38	3	15	42	1.65
30507891--30507958	25	2.7	24	75	11	64	19	23	17	39	1.92
30507902--30507958	25	2.2	26	84	3	71	19	22	19	38	1.93
30507938--30507993	24	2.3	25	75	9	62	21	23	17	37	1.94
30508044--30508097	25	2.2	24	83	9	65	18	29	18	33	1.95
30512699--30512733	13	2.7	13	90	0	52	17	20	40	22	1.92
30513978--30514010	16	1.9	18	88	11	52	48	12	15	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30514497--30514710	43	4.9	44	81	8	210	27	28	20	24	1.99
30514499--30514711	88	2.5	85	81	11	229	26	28	20	24	1.99
30515517--30515658	47	3.0	47	94	1	250	45	14	11	28	1.81
30527109--30527191	26	3.3	26	84	3	98	18	22	22	36	1.95
30527259--30527306	24	2.0	24	84	4	62	18	27	16	37	1.92
30530596--30530641	22	2.1	22	100	0	92	36	4	28	30	1.76
30531518--30531554	19	1.9	19	88	0	56	27	2	10	59	1.44
30537255--30537291	18	2.1	18	100	0	74	35	5	10	48	1.61
30538417--30538523	42	2.5	42	75	3	108	20	21	14	42	1.88
30543704--30543815	55	2.0	55	94	0	197	38	16	20	24	1.93
30550664--30550908	61	4.0	61	99	0	481	22	20	9	47	1.79
30550689--30550937	122	2.0	120	84	4	320	23	22	12	42	1.87
30551158--30551211	22	2.5	21	81	3	54	20	33	29	16	1.95
30552921--30553864	7	134.9	7	100	0	1888	28	14	0	57	1.38
30557630--30557774	42	3.4	42	74	12	136	31	25	17	24	1.97
30561548--30561613	31	2.1	31	97	0	123	13	22	39	24	1.90
30562722--30562843	43	2.9	42	79	7	138	27	22	17	31	1.96
30563160--30563205	16	2.9	16	96	0	83	43	6	10	39	1.66
30585643--30585762	43	2.8	42	78	9	145	30	20	17	31	1.96
30588387--30588428	21	2.0	20	82	13	50	45	14	7	33	1.72
30589271--30589314	22	2.0	22	86	8	63	54	4	2	38	1.33
30590445--30590570	53	2.4	53	89	2	182	22	25	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30590447--30590570	26	4.7	26	74	3	122	21	25	13	39	1.90
30595597--30595648	26	2.0	27	88	3	79	19	5	21	53	1.65
30596605--30596661	28	2.0	28	100	0	114	28	33	7	31	1.84
30601371--30601440	28	2.5	28	90	4	106	32	27	12	27	1.93
30606662--30606743	30	2.7	30	94	0	137	30	19	14	35	1.92
30617853--30617910	24	2.5	22	81	13	71	15	8	1	74	1.14
30631714--30631817	23	4.4	23	75	12	79	28	21	24	25	1.99
30631736--30631806	22	3.2	21	78	7	70	30	19	23	25	1.98
30635755--30635903	42	3.5	43	75	9	135	29	26	17	26	1.97
30644122--30644361	99	2.4	100	84	2	313	23	18	28	29	1.98
30644129--30644353	49	4.5	49	87	2	297	24	17	28	29	1.97
30647869--30648042	46	3.7	46	79	9	167	24	30	18	26	1.98
30659507--30659542	17	2.1	17	100	0	72	36	16	5	41	1.72
30668131--30668195	28	2.3	28	89	0	103	23	41	16	18	1.90
30673579--30673622	15	2.9	15	89	0	70	56	13	13	15	1.67
30680035--30680184	40	3.8	40	94	0	264	22	28	20	30	1.98
30694823--30694942	49	2.5	49	94	2	208	30	29	8	32	1.87
30700605--30700768	67	2.5	64	85	3	204	22	31	14	31	1.94
30701337--30701771	219	2.0	219	99	0	861	40	17	18	23	1.90
30706236--30706340	23	4.6	23	78	8	115	35	19	21	23	1.96
30706234--30706348	45	2.5	46	84	8	146	33	19	22	24	1.97
30706970--30707012	21	2.0	21	86	0	59	46	20	0	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30720654--30720705	22	2.4	21	79	14	61	19	1	1	76	0.97
30729308--30729352	22	2.0	22	95	0	81	22	20	17	40	1.92
30729498--30729532	18	1.9	18	88	0	52	25	28	17	28	1.97
30733177--30733288	45	2.5	45	89	1	172	30	18	10	40	1.85
30735515--30735622	26	4.2	26	93	0	189	30	6	25	37	1.81
30739705--30739787	40	2.1	40	86	4	114	25	14	26	33	1.94
30740951--30741048	43	2.3	43	81	0	124	16	19	35	28	1.93
30747043--30747121	28	2.9	27	79	7	97	39	25	21	13	1.90
30751938--30752068	49	2.7	49	77	2	147	31	20	27	20	1.98
30755899--30756075	48	3.7	48	81	1	221	29	24	18	27	1.98
30755899--30756075	96	1.8	96	86	2	257	29	24	18	27	1.98
30765064--30765322	130	2.0	130	97	0	491	33	8	21	36	1.84
30768183--30768294	56	2.0	56	98	0	215	31	19	25	23	1.98
30776060--30776151	47	2.0	47	91	0	148	34	9	23	31	1.88
30782074--30782194	43	2.8	42	86	7	154	31	23	17	28	1.97
30786129--30786230	50	2.0	50	84	0	132	41	21	7	29	1.81
30790282--30790404	44	2.8	44	80	10	142	26	30	18	25	1.98
30793277--30793529	68	3.9	64	77	10	219	30	15	28	24	1.96
30799968--30800077	55	2.0	55	85	3	150	26	31	20	21	1.98
30800978--30801295	47	6.7	47	75	12	249	23	30	19	26	1.98
30800978--30801295	141	2.2	140	80	5	345	23	30	19	26	1.98
30828397--30828581	79	2.3	81	83	7	227	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30828398--30828581	40	4.6	40	82	9	207	25	22	27	24	2.00
30828398--30828614	79	2.7	79	80	7	192	26	22	27	23	1.99
30832174--30832257	42	2.0	42	95	0	150	29	16	21	32	1.95
30834056--30834134	29	2.7	28	84	7	104	18	18	29	32	1.96
30841984--30842018	16	2.2	16	100	0	70	25	22	11	40	1.88
30841990--30842037	16	2.9	16	87	3	60	29	22	14	33	1.94
30843086--30843141	28	2.0	28	100	0	112	35	0	17	46	1.49
30844177--30844214	20	1.9	20	88	0	58	36	2	5	55	1.37
30848056--30848133	35	2.4	33	85	10	99	20	1	10	67	1.27
30848073--30848143	35	2.1	34	92	7	119	16	0	14	69	1.20
30850034--30850146	43	2.6	42	78	6	111	29	25	18	26	1.98
30850451--30850692	119	2.0	120	97	0	459	31	21	4	41	1.75
30853805--30853920	47	2.4	48	79	1	144	33	30	14	21	1.93
30855752--30855786	14	2.5	14	90	0	52	34	17	5	42	1.73
30856990--30857080	47	1.9	47	86	4	130	54	9	5	29	1.55
30859808--30859955	40	3.7	40	92	0	233	34	27	16	20	1.95
30861287--30861354	30	2.3	30	100	0	136	27	33	20	17	1.95
30865606--30865783	27	6.6	27	84	3	205	29	28	15	26	1.96
30865627--30865782	82	1.9	81	88	3	233	29	28	15	26	1.96
30873669--30873846	27	6.6	27	84	3	205	29	28	15	26	1.96
30873690--30873845	82	1.9	81	88	3	233	29	28	15	26	1.96
30877845--30877924	42	1.9	42	84	0	106	27	31	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30882255--30882281	12	2.2	12	100	0	54	55	7	0	37	1.28
30887992--30888034	22	2.0	22	86	9	61	65	0	4	30	1.13
30888003--30888055	18	2.9	18	76	15	56	66	1	3	28	1.20
30888010--30888063	18	3.1	17	74	15	56	66	1	3	27	1.19
30888783--30888838	20	2.8	20	89	2	78	28	0	3	67	1.07
30888789--30888856	20	3.4	18	80	15	64	26	0	2	70	1.01
30889199--30889831	132	4.8	132	92	0	1025	24	16	25	33	1.95
30890164--30890196	15	2.1	16	88	5	50	21	0	18	60	1.36
30890834--30890955	47	2.6	47	94	0	217	36	17	14	31	1.90
30893713--30893751	6	6.2	6	85	5	51	33	0	2	64	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172