genome.fa.s10.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  139  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45850536--45850742	103	2.0	103	97	0	387	40	16	10	33	1.82
45853812--45854202	130	3.0	132	80	5	434	27	18	19	34	1.95
45853813--45854212	132	3.0	128	77	5	381	28	19	18	34	1.95
45856306--45856362	20	2.8	20	79	15	62	42	3	1	52	1.28
45856468--45856508	18	2.4	17	87	4	55	56	0	0	43	0.99
45857473--45857538	21	3.2	21	67	16	57	28	10	21	39	1.86
45857454--45857540	40	2.2	40	87	8	124	31	9	20	39	1.84
45857744--45857844	45	2.2	45	87	3	141	20	18	20	39	1.92
45857824--45857867	6	7.2	6	79	5	52	15	20	18	45	1.85
45858584--45858616	17	2.0	17	94	5	59	36	15	0	48	1.45
45858901--45859040	46	3.0	46	88	2	201	18	22	13	45	1.85
45858922--45859138	117	1.9	117	85	1	301	20	23	13	42	1.87
45858970--45859102	71	1.9	71	85	0	185	19	24	12	43	1.86
45859039--45859198	46	3.5	46	90	0	239	23	23	12	40	1.88
45863551--45863595	17	2.6	17	82	0	54	31	8	20	40	1.83
45864961--45865608	324	2.0	324	100	0	1296	27	23	16	32	1.96
45878637--45878679	19	2.3	19	84	11	61	76	0	11	11	1.02
45883810--45883889	40	2.0	39	87	2	115	27	15	26	31	1.95
45883910--45883978	28	2.5	28	82	0	75	30	17	27	24	1.97
45885537--45885573	18	2.1	18	100	0	74	18	16	27	37	1.92
45888108--45888132	13	1.9	13	100	0	50	16	0	0	84	0.63
45903600--45903714	30	3.8	30	92	0	194	25	47	3	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45904233--45904442	25	8.4	24	68	16	99	32	6	4	56	1.44
45904604--45904637	15	2.3	14	90	10	50	29	0	5	64	1.17
45904604--45904637	8	4.5	8	96	3	54	29	0	5	64	1.17
45904604--45904644	16	2.6	15	88	7	55	29	0	4	65	1.13
45911440--45911502	29	2.2	27	83	8	72	33	19	9	38	1.84
45911451--45911506	29	1.9	29	96	0	103	35	21	7	35	1.81
45933313--45933355	22	2.0	22	86	9	61	55	2	2	39	1.25
45933653--45933684	15	2.2	14	94	5	55	25	0	0	75	0.81
45935452--45935496	25	1.9	22	86	13	63	71	0	26	2	0.98
45941833--45941889	30	1.9	29	89	3	87	24	3	3	68	1.21
45941847--45941893	14	3.2	14	80	11	58	27	2	0	70	0.99
45941686--45942419	142	5.2	143	84	7	906	27	5	8	58	1.49
45942145--45942187	13	3.4	13	80	6	52	25	2	4	67	1.22
45941686--45942435	285	2.6	277	83	9	935	27	5	7	58	1.49
45942415--45942443	14	2.1	14	100	0	58	44	0	0	55	0.99
45942863--45942901	20	2.0	20	89	0	60	0	33	0	66	0.92
45942856--45942927	12	5.8	12	75	16	67	0	26	0	73	0.83
45942944--45943009	22	3.1	22	72	12	66	0	43	0	56	0.99
45942955--45942992	3	13.3	3	83	10	53	0	39	0	60	0.97
45943075--45943116	22	1.9	22	90	0	66	11	23	40	23	1.88
45943134--45943186	27	2.0	27	96	0	97	9	37	32	20	1.85
45944080--45944110	16	1.9	16	93	0	53	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45961880--45962011	35	3.6	38	77	9	132	33	22	11	32	1.90
45966882--45966948	34	2.0	34	87	0	98	22	23	19	34	1.97
45970136--45970161	13	2.0	13	100	0	52	15	0	0	84	0.62
45974791--45974822	6	5.3	6	100	0	64	34	0	0	65	0.93
45978604--45978628	6	4.2	6	100	0	50	84	0	0	16	0.63
45979708--45979744	3	12.3	3	88	0	56	35	2	0	62	1.10
45979899--45979963	19	3.5	20	76	19	77	36	0	0	63	0.95
45980542--45980602	31	2.0	31	87	6	90	57	13	8	21	1.62
45988695--45988749	27	2.0	27	100	0	110	34	10	21	32	1.89
45989876--45990000	64	1.9	65	85	9	175	56	13	13	16	1.68
45989958--45990107	80	1.9	78	86	4	212	51	16	14	18	1.77
45997466--45997512	18	2.6	18	82	0	67	48	8	36	6	1.59
45998005--45998174	84	2.0	85	83	3	218	27	16	19	37	1.93
45999479--45999518	17	2.3	18	83	12	57	47	0	10	42	1.37
46001408--46001441	8	4.1	8	85	7	50	2	14	0	82	0.79
46005360--46005399	19	2.2	18	90	4	62	15	27	5	52	1.63
46009151--46009221	31	2.3	31	82	4	81	38	8	11	42	1.71
46010335--46010420	42	2.0	42	86	4	120	31	13	17	37	1.89
46014930--46014955	9	2.9	9	100	0	52	46	11	23	19	1.82
46027963--46028004	17	2.5	17	80	0	57	30	0	19	50	1.48
46030063--46030106	20	2.4	18	88	11	63	2	31	0	65	1.05
46030120--46030155	9	3.9	9	85	7	54	0	11	2	86	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46030119--46030155	19	1.9	19	94	0	65	0	13	2	83	0.74
46039358--46039397	11	3.6	12	80	12	50	7	0	30	62	1.23
46039925--46039951	5	5.4	5	100	0	54	40	40	0	18	1.51
46042937--46042998	31	2.0	31	96	0	115	40	9	3	46	1.53
46043341--46043424	40	2.1	40	100	0	168	23	20	23	32	1.98
46048021--46048072	10	5.3	10	79	2	61	73	1	0	25	0.94
46048021--46048087	20	3.3	21	81	8	77	70	1	0	28	0.96
46048021--46048098	21	3.8	21	78	11	74	69	1	1	28	1.04
46048106--46048154	25	2.0	24	92	4	80	57	2	0	40	1.10
46052867--46052903	18	2.1	18	94	0	65	59	5	8	27	1.48
46055968--46056005	20	1.9	20	88	0	58	26	21	15	36	1.93
46056648--46056687	21	2.0	20	85	5	53	32	0	25	42	1.55
46061993--46062076	26	3.2	26	96	0	150	36	25	4	33	1.77
46068626--46068685	31	1.9	31	96	0	111	33	21	11	33	1.90
46082555--46082595	21	1.9	22	90	5	66	58	4	7	29	1.46
46084313--46084364	25	2.0	26	85	3	70	44	3	0	51	1.19
46085731--46085763	16	2.0	17	88	5	50	0	0	18	81	0.68
46085767--46085791	2	12.5	2	100	0	50	0	48	0	52	1.00
46086162--46086209	25	1.9	25	95	0	87	47	2	10	39	1.49
46088968--46089042	3	24.7	3	97	2	141	33	33	0	33	1.58
46092329--46092385	27	2.0	29	83	6	73	24	8	3	63	1.39
46103500--46103961	130	3.6	129	82	5	511	27	17	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46106507--46106577	31	2.3	31	80	0	79	36	2	1	59	1.21
46108023--46108080	13	4.5	13	82	0	71	25	8	25	39	1.84
46111745--46111807	24	2.6	24	80	9	67	25	4	6	63	1.38
46111766--46111822	24	2.4	24	81	0	69	26	3	8	61	1.42
46112030--46112089	24	2.7	23	80	14	74	35	0	5	60	1.19
46122127--46122309	44	4.2	44	84	5	257	27	15	33	22	1.95
46122132--46122293	84	1.9	84	93	0	279	25	16	34	22	1.95
46124185--46124579	44	9.2	44	82	6	490	29	16	31	22	1.96
46124193--46124579	84	4.6	84	84	4	451	28	16	32	22	1.96
46124185--46124579	128	3.1	128	87	4	555	29	16	31	22	1.96
46128785--46128870	3	28.7	3	68	9	50	56	5	0	37	1.23
46128765--46128865	33	3.2	32	89	8	140	53	6	0	39	1.28
46128792--46128865	11	6.7	11	69	10	53	55	6	0	37	1.27
46130796--46130946	48	3.2	48	72	3	162	40	19	15	23	1.91
46130772--46130948	94	1.9	94	89	0	273	41	19	15	23	1.90
46132808--46133359	205	2.7	202	89	5	839	38	15	13	31	1.87
46135443--46137432	995	2.0	995	100	0	3980	40	16	14	28	1.88
46139082--46139116	10	3.4	10	92	7	61	51	8	20	20	1.73
46139084--46139116	11	3.1	11	91	8	59	54	9	18	18	1.69
46155402--46155434	15	2.2	15	89	10	50	63	0	0	36	0.95
46164418--46164447	15	2.1	15	93	6	53	53	0	0	46	1.00
46168030--46168090	30	2.0	30	87	0	86	39	6	22	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46176525--46176572	25	1.9	25	86	0	69	45	6	6	41	1.54
46183363--46183407	6	7.5	6	94	0	81	51	15	15	17	1.77
46185158--46185278	39	3.1	39	92	0	206	24	31	23	20	1.98
46187853--46187894	13	2.9	15	79	17	52	52	7	0	40	1.29
46194515--46194540	3	8.7	3	100	0	52	65	0	34	0	0.93
46197699--46197776	4	19.5	4	94	0	138	50	26	0	23	1.50
46199607--46199665	24	2.4	24	94	5	100	45	5	3	45	1.42
46200713--46200764	15	3.2	15	73	19	50	44	0	1	53	1.11
46200796--46200831	15	2.3	16	85	9	56	38	0	0	61	0.96
46200818--46200861	19	2.4	17	88	11	61	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172